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Cao Y, Cheng Z, Sun X, Zhu M, Yue L, Liu H, Wu X, Zhang J, Duan C. Genome-Wide Identification of the Trihelix Transcription Factor Family and Functional Analysis of ZmTHX15 in Maize. Int J Mol Sci 2024; 25:13257. [PMID: 39769022 PMCID: PMC11675602 DOI: 10.3390/ijms252413257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Revised: 12/05/2024] [Accepted: 12/08/2024] [Indexed: 01/11/2025] Open
Abstract
The trihelix transcription factor, which is a plant-specific family, play a critical role in plant growth and development and stress responses. Drought is the main limiting factor affecting yield of maize (Zea mays). However, the identification and characterization of this gene family in maize and its biological functions in response to drought stress have not been reported. Here, 46 Zea mays trihelix genes (ZmTHXs) were identified in the genome. Phylogenetic analysis of the ZmTHXs revealed that the genes were clustered into five subfamilies: GT-1, GT-2, GTγ, SH4, and SIP1. Chromosomal localization analysis showed that the 46 ZmTHXs were unevenly distributed across 10 chromosomes in maize. Cis-acting elements related to abiotic stress in ZmTHXs were found. Most ZmTHXs genes showed significant changes in expression levels under drought treatment. In addition, ZmTHX15-overexpressing Arabidopsis exhibited stronger drought tolerance with less secondary oxidative damage and higher photosynthetic rate. These findings could serve as a basis for future studies on the roles of ZmTHXs and the potential genetic markers for breeding stress-resistant and high-yielding maize varieties.
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Affiliation(s)
- Yanyong Cao
- Institute of Cereal Crops, Henan Academy of Agricultural Sciences, The Shennong Laboratory, Zhengzhou 450002, China; (Y.C.); (Z.C.); (X.S.); (M.Z.)
| | - Zeqiang Cheng
- Institute of Cereal Crops, Henan Academy of Agricultural Sciences, The Shennong Laboratory, Zhengzhou 450002, China; (Y.C.); (Z.C.); (X.S.); (M.Z.)
| | - Xinyan Sun
- Institute of Cereal Crops, Henan Academy of Agricultural Sciences, The Shennong Laboratory, Zhengzhou 450002, China; (Y.C.); (Z.C.); (X.S.); (M.Z.)
| | - Meichen Zhu
- Institute of Cereal Crops, Henan Academy of Agricultural Sciences, The Shennong Laboratory, Zhengzhou 450002, China; (Y.C.); (Z.C.); (X.S.); (M.Z.)
| | - Ling Yue
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450046, China; (L.Y.); (H.L.); (X.W.)
| | - Hui Liu
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450046, China; (L.Y.); (H.L.); (X.W.)
| | - Xiaolin Wu
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450046, China; (L.Y.); (H.L.); (X.W.)
| | - Jinghua Zhang
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450046, China; (L.Y.); (H.L.); (X.W.)
| | - Canxing Duan
- Key Laboratory of Grain Crop Genetic Resources Evaluation and Utilization, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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Lan Y, Gong F, Li C, Xia F, Li Y, Liu X, Liu D, Liang G, Fang C, Cai P. New insights into the evolution analysis of trihelix gene family in eggplant (Solanum melongena L.) and expression analysis under abiotic stress. BMC Genomics 2024; 25:1040. [PMID: 39501159 PMCID: PMC11539502 DOI: 10.1186/s12864-024-10959-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 10/25/2024] [Indexed: 11/08/2024] Open
Abstract
BACKGROUND Trihliex transcription factors (TFs) play crucial roles in plant growth and development, stress response, and plant hormone signaling network transmission. In order to comprehensively investigate the functions of trihliex genes in eggplant development and the abiotic stress response, we conducted an extensive analysis of the trihliex gene family in the eggplant genome. RESULTS In this study, 30 trihelix gene family members were unevenly distributed on 12 chromosomes. On the basis of their phylogenetic relationships, these genes were conserved in different plant species and could be divided into six subfamilies, with trihelix genes within the same subfamily sharing similar structures. The promoter regions of trihelix genes contained cis-acting elements related to plant growth and development, plant hormones, and abiotic stress responses, suggesting potential applications in the development of more resistant crops. Selective pressure assessments indicated that trihliex genes have undergone purifying selection pressure. Expression analysis on the basis of transcriptomic profiles revealed that SmGT18, SmGT29, SmGT6, and SmGT28 are highly expressed in roots, leaves, flowers, and fruits, respectively. Expression analysis via quantitative real-time PCR (qRT‒PCR) revealed that most trihelix genes respond to low temperature, abscisic acid (ABA), and salicylic acid (SA), with SmGT29 exhibiting significant upregulation under cold stress conditions. The SmGT29 gene was subsequently successfully cloned from eggplant, which was located in the nucleus, robust transcriptional activity, and a protein molecular weight of 74.59 kDa. On the basis of these findings, SmGT29 was postulated to be a pivotal candidate gene that actively responds to biotic stress stimuli, thereby supporting the plant's innate stress resistance mechanisms. CONCLUSION In summary, this study was the first report on trihelix genes and their potential roles in eggplant plants. These results provided valuable insights for enhancing stress resistance and quality traits in eggplant breeding, thereby serving as a crucial reference for future improvement efforts.
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Affiliation(s)
- Yanhong Lan
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Fangyi Gong
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Chun Li
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Feng Xia
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Yifan Li
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Xiaojun Liu
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Duchen Liu
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Genyun Liang
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China
| | - Chao Fang
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China.
| | - Peng Cai
- Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
- Sichuan Province Engineering Technology Research Center of Vegetables, Chengdu, 611934, China.
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Mishra G, Mohapatra SK, Rout GR. Plant membrane transporters function under abiotic stresses: a review. PLANTA 2024; 260:125. [PMID: 39448443 DOI: 10.1007/s00425-024-04548-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Accepted: 10/04/2024] [Indexed: 10/26/2024]
Abstract
MAIN CONCLUSION In the present review, we discussed the detailed signaling cascades via membrane transporters that confer plant tolerance to abiotic stresses and possible significant use in plant development for climate-resilient crops. Plant transporters play significant roles in nutrient uptake, cellular balance, and stress responses. They facilitate the exchange of chemicals and signals across the plant's membrane by signal transduction, osmotic adjustment, and ion homeostasis. Therefore, research into plant transporters is crucial for understanding the mechanics of plant stress tolerance. Transporters have potential applications in crop breeding for increased stress resistance. We discuss new results about various transporter families (ABC, MATE, NRAMP, NRT, PHT, ZIP), including their functions in abiotic stress tolerance and plant development. Furthermore, we emphasize the importance of transporters in plant responses to abiotic stresses such as drought, cold, salt, and heavy metal toxicity, low light, flooding, and nutrient deficiencies. We discuss the transporter pathways and processes involved in diverse plant stress responses. This review discusses recent advances in the role of membrane transporters in abiotic stress tolerance in Arabidopsis and other crops. The review contains the genes discovered in recent years and associated molecular mechanisms that improve plants' ability to survive abiotic stress and their possible future applications by integrating membrane transporters with other technologies.
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Affiliation(s)
- Gayatri Mishra
- The Department of Biological Sciences, The University of Utah, 257 1400 E, Salt Lake City, UT, 84112, USA.
| | - Subrat Kumar Mohapatra
- The Department of Agricultural Statistics, Institute of Agricultural Sciences, Siksha 'O' Anusandhan University, Bhubaneswar, Odisha, 751030, India
| | - Gyana Ranjan Rout
- The Department of Molecular Biology and Biotechnology, Institute of Agricultural Sciences, Siksha 'O' Anusandhan University, Bhubaneswar, Odisha, 751030, India.
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Hao Y, Yan X, Li Q. Genome-Wide Identification and Expression Profiling of Velvet Complex Transcription Factors in Populus alba × Populus glandulosa. Int J Mol Sci 2024; 25:3926. [PMID: 38612736 PMCID: PMC11011700 DOI: 10.3390/ijms25073926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 03/25/2024] [Accepted: 03/28/2024] [Indexed: 04/14/2024] Open
Abstract
The discovery of new genes with novel functions is a major driver of adaptive evolutionary innovation in plants. Especially in woody plants, due to genome expansion, new genes evolve to regulate the processes of growth and development. In this study, we characterized the unique VeA transcription factor family in Populus alba × Populus glandulosa, which is associated with secondary metabolism. Twenty VeA genes were characterized systematically on their phylogeny, genomic distribution, gene structure and conserved motif, promoter binding site, and expression profiling. Furthermore, through ChIP-qPCR, Y1H, and effector-reporter assays, it was demonstrated that PagMYB128 directly regulated PagVeA3 to influence the biosynthesis of secondary metabolites. These results provide a basis for further elucidating the function of VeAs gene in poplar and its genetic regulation mechanism.
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Affiliation(s)
| | - Xiaojing Yan
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; (Y.H.); (Q.L.)
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