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Salehzadeh M, Izadpanah K, Afsharifar A. Antiviral activity and mechanisms of action of atropine, rutin, and hypoxanthine against tomato Brown rugose fruit virus. Microb Pathog 2025; 205:107587. [PMID: 40287106 DOI: 10.1016/j.micpath.2025.107587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Revised: 03/26/2025] [Accepted: 04/13/2025] [Indexed: 04/29/2025]
Abstract
Plant viral diseases cause considerable damage to the agricultural industry and are difficult to control. Recently, botanical biopesticides that are environmentally friendly, safe for non-target organisms, and not prone to developing drug resistance have shown great potential as antiviral agents. In the present study a screening of natural products with antiviral potential was conducted, and three compounds - atropine, rutin, and hypoxanthine - were identified to possess anti-tomato brown rugose fruit virus (ToBRFV) activity. Further, the modes of action of these compounds were investigated. The results of the bioassay revealed that atropine, rutin and hypoxanthine were effective at concentrations of 50, 100 and 150 μg mL-1 in inactivating, inhibiting proliferation and protecting against ToBRFV when combined with atropine and rutin. As the concentration of compounds increased, their antiviral properties were found to be enhanced. These compounds were found to reduce the expression of the coat protein and the replicase genes of ToBRFV. Atropine and rutin, in particular, demonstrated substantial anti-ToBRFV effects with diverse modes of action when used alone or in combination. Hypoxanthine demonstrated a comparatively weaker antiviral effect than the other two compounds, and when combined with the latter, the antiviral activity of the other compounds was also reduced to a certain extent. These results provided key proof that these compounds may represent a promising source of novel antiviral agents for agricultural use.
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Affiliation(s)
- Mehrdad Salehzadeh
- Plant Pathology, Plant Virology Research Center, School of Agriculture, Shiraz University, Shiraz, Iran.
| | - Keramatollah Izadpanah
- Plant Pathology, Plant Virology Research Center, School of Agriculture, Shiraz University, Shiraz, Iran.
| | - Alireza Afsharifar
- Plant Pathology, Plant Virology Research Center, School of Agriculture, Shiraz University, Shiraz, Iran.
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Qiu Y, Zhang S, Tan A, Cai Q, Chen K, Yang K, Jiao Y, Lai Q, Zhang C, Lin S, Lin W, Yang X, Wang W. Detection of TuMV by a toehold switch sensor coupled with NASBA amplification in Pseudostellaria heterophylla. PLANT METHODS 2025; 21:81. [PMID: 40490766 DOI: 10.1186/s13007-025-01394-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2024] [Accepted: 05/16/2025] [Indexed: 06/11/2025]
Abstract
Pseudostellaria heterophylla (P. heterophylla) is a perennial herb that has been used as a medicinal food for hundreds of years in China. Viral infections during the production of P. heterophylla severely reduce the yield and quality. Turnip mosaic virus (TuMV) is a common and highly variable viral pathogen in P. heterophylla plants. A high-efficiency diagnostic system is urgently needed to control and alleviate TuMV infection. However, the current detection methods still have various deficiencies that limit their field application. Here, a cell-free expression system relying on nucleic acid sequence-based amplification (NASBA) with toehold switch sensors and a visual reporter for color change was developed and introduced for TuMV detection in P. heterophylla. After designing and screening the approach, the selected sensitive sensor was able to detect 1 pM TuMV RNA fragments within 40 min, and the detection limit was less than 10 fM if the time was extended to 90 min. The sensor exhibited high specificity, with no cross-reactivity detected when tested against cucumber mosaic virus, another prevalent viral pathogen in P. heterophylla. In addition, in in-field samples, TuMV was successfully detected directly from both purified and crude RNA extracts in approximately 3 h. This cell-free synthetic biology tool is rapid, sensitive, specific and field-applicable and provides high-capacity and low-cost diagnostics for TuMV in P. heterophylla, as well as various viruses in herbs and other host plants.
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Affiliation(s)
- Yun Qiu
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
| | - Shuxin Zhang
- College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Aidi Tan
- China Institute of Marine Technology & Economy, Beijing, 100081, China
| | - Qiang Cai
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
| | - Kezhi Chen
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
| | - Kaiwen Yang
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
| | - Yanyang Jiao
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
| | - Qiuting Lai
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
| | - Chenjing Zhang
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
| | - Sheng Lin
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
- Fujian Provincial Key Laboratory of Agroecological Processing and Safety Monitoring, Fujian Agriculture and Forestry University, Fuzhou, 350002, P. R. China
- Key Laboratory of Crop Ecology and Molecular Physiology, Fujian Agriculture and Forestry University, Fujian Province University, Fuzhou, 350002, P. R. China
| | - Wenxiong Lin
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China
- Fujian Provincial Key Laboratory of Agroecological Processing and Safety Monitoring, Fujian Agriculture and Forestry University, Fuzhou, 350002, P. R. China
- Key Laboratory of Crop Ecology and Molecular Physiology, Fujian Agriculture and Forestry University, Fujian Province University, Fuzhou, 350002, P. R. China
| | - Xuelian Yang
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China.
- Agricultural Ecology Research Institute, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Wenfei Wang
- College of JunCao Science and Ecology, Fujian Agriculture and Forestry University, Jinshan Fuzhou, 350002, China.
- Agricultural Ecology Research Institute, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
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Mikhaylova E. Virus-Induced Genome Editing (VIGE): One Step Away from an Agricultural Revolution. Int J Mol Sci 2025; 26:4599. [PMID: 40429744 PMCID: PMC12111327 DOI: 10.3390/ijms26104599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2025] [Revised: 05/07/2025] [Accepted: 05/08/2025] [Indexed: 05/29/2025] Open
Abstract
There is currently a worldwide trend towards deregulating the use of genome-edited plants. Virus-induced genome editing (VIGE) is a novel technique that utilizes viral vectors to transiently deliver clustered regularly interspaced short palindromic repeat (CRISPR) components into plant cells. It potentially allows us to obtain transgene-free events in any plant species in a single generation without in vitro tissue culture. This technology has great potential for agriculture and is already being applied to more than 14 plant species using more than 20 viruses. The main limitations of VIGE include insufficient vector capacity, unstable expression of CRISPR-associated (Cas) protein, plant immune reaction, host specificity, and reduced viral activity in meristem. Various solutions to these problems have been proposed, such as fusion of mobile elements, RNAi suppressors, novel miniature Cas proteins, and seed-borne viruses, but the final goal has not yet been achieved. In this review, the mechanism underlying the ability of different classes of plant viruses to transiently edit genomes is explained. It not only focuses on the latest achievements in virus-induced editing of crops but also provides suggestions for improving the technology. This review may serve as a source of new ideas for those planning to develop new approaches in VIGE.
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Affiliation(s)
- Elena Mikhaylova
- Institute of Biochemistry and Genetics, Ufa Federal Research Centre of the Russian Academy of Sciences, Ufa 450054, Russia
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Zhang H, Fan G, Leng D, Liu S, Cai L. Graphene Oxide Nanosheets for Delivery of RNAi and Plant Immune Stimulation for Sustained Protection against Plant Viruses. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2025; 73:11110-11120. [PMID: 40266879 DOI: 10.1021/acs.jafc.4c12485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2025]
Abstract
Given the dearth of effective antiviral drugs, the exogenous delivery of dsRNA for RNAi against plant viral diseases holds great promise. Here, we present an effective delivery approach of dsRNA utilizing graphene oxide nanosheets (GONs) on mature plant leaves via a spray. Our method achieves rapid and sustained gene knockdown, reducing the level of the target gene to 46% by day 2, and continuously releases dsRNA for at least 6 days. The coupling of GONs with specific fragments of coat protein and replicase gene dsRNA exhibited a superior antiviral effect compared to specific fragments of RNA-dependent replicase and movement protein. The coupling of GONs with the specific fragment of the replicase gene even has 87.2% protection against TMV. Moreover, the nanocomplex GONs@dsRNA can also stimulate plant immunity through bursts of reactive oxygen species without harming growth. Overall, our findings present a robust and convenient tool for plant virus control.
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Affiliation(s)
- Hongbao Zhang
- College of Tobacco Science of Guizhou University, Guizhou Provincial Key Laboratory for Tobacco Quality Improvement and Efficiency Enhancement/Guizhou Key Lab of Agro-Bioengineering/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou University, Guiyang, Guizhou Province 550025, China
| | - Guangjin Fan
- College of Tobacco Science of Guizhou University, Guizhou Provincial Key Laboratory for Tobacco Quality Improvement and Efficiency Enhancement/Guizhou Key Lab of Agro-Bioengineering/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou University, Guiyang, Guizhou Province 550025, China
| | - Dongwei Leng
- College of Tobacco Science of Guizhou University, Guizhou Provincial Key Laboratory for Tobacco Quality Improvement and Efficiency Enhancement/Guizhou Key Lab of Agro-Bioengineering/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou University, Guiyang, Guizhou Province 550025, China
| | - Shuaikang Liu
- College of Tobacco Science of Guizhou University, Guizhou Provincial Key Laboratory for Tobacco Quality Improvement and Efficiency Enhancement/Guizhou Key Lab of Agro-Bioengineering/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou University, Guiyang, Guizhou Province 550025, China
| | - Lin Cai
- College of Tobacco Science of Guizhou University, Guizhou Provincial Key Laboratory for Tobacco Quality Improvement and Efficiency Enhancement/Guizhou Key Lab of Agro-Bioengineering/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou University, Guiyang, Guizhou Province 550025, China
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Peng Y, Su L, Liu M, Zeng C, Xiang B, Xie Z, Hu Z, Zhou N. Biochar-Enhanced Sulfur: Mechanistic Insights into a Novel and Effective Bactericide. NANOMATERIALS (BASEL, SWITZERLAND) 2025; 15:697. [PMID: 40358314 PMCID: PMC12073505 DOI: 10.3390/nano15090697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/19/2025] [Revised: 04/10/2025] [Accepted: 04/15/2025] [Indexed: 05/15/2025]
Abstract
The development of green, efficient, and stable pesticides for controlling agricultural pathogens remains a critical research focus. Elemental sulfur, although widely used for its bactericidal and insecticidal properties, suffers from aggregation, poor dispersibility, and limited contact with target organisms, restricting its effectiveness. In this study, we synthesized a novel biochar-sulfur composite by combining sustainable biochar with sulfur at low temperatures. The resulting material exhibited enhanced dispersibility and a five-fold increase in bactericidal efficacy compared to sulfur alone, as demonstrated in tests against R. solanacearum and E. coli. Additionally, the composite maintained 80% efficacy after five cycles of use, highlighting its favorable cyclic performance. Mechanistic studies revealed that biochar accelerates sulfur's redox reaction, generating free radicals that drive efficient bactericidal action. This work provides a simple and sustainable approach for developing sulfur-based antimicrobial pesticides, offering new opportunities for sulfur utilization in agriculture.
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Affiliation(s)
- Yuanqi Peng
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
| | - Lezhu Su
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Resources, Hunan Agricultural University, Changsha 410128, China
| | - Meng Liu
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
| | - Chen Zeng
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
| | - Bo Xiang
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
| | - Zhuoyao Xie
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
| | - Zijing Hu
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
| | - Nan Zhou
- Hunan Engineering Research Center for Biochar, Hunan Agricultural University, Changsha 410128, China; (Y.P.); (L.S.); (M.L.); (C.Z.); (B.X.); (Z.X.); (Z.H.)
- College of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
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Belludi R, Sharma A, Sharma SP, Ramesh GV, Gudi S. Leveraging chlorophyll fluorescence uncovers potato virus Y resistance in potato and its validation through viral quantification and yield loss studies. PLANT CELL REPORTS 2025; 44:100. [PMID: 40274639 DOI: 10.1007/s00299-025-03489-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Accepted: 03/31/2025] [Indexed: 04/26/2025]
Abstract
KEY MESSAGE Chlorophyll fluorescence (CF) measurements have been demonstrated to be an efficient and non-invasive tool for identifying and developing PVY-resistant potato cultivars. The validity of CF measurements was confirmed through viral titer and yield-loss assays. In the quest to identify resistant sources for potato virus Y (PVY) within Indian potato germplasm, we developed a phenotyping approach leveraging plant physiological responses against PVY infection. The study evaluated 71 potato genotypes including cultivated and experimental clones, during the year 2021-2022 and 2022-23 through mechanical inoculation in experimental fields at the Punjab Agricultural University, Ludhiana. We employed a combination of serological and molecular screening, complemented with chlorophyll fluorescence (CF) measurements to classify resistant and susceptible genotypes. Out of 71 genotypes, 34 exhibited PVY resistance, with KP-16-19-14 being the highly resistant line with minimal yield loss (i.e., only 1.64% reduction) and undetectable viral titer. This genotype holds promise as a valuable resistance source for future breeding programmes. Our findings revealed that resistant genotypes maintained stable CF metrics and experienced minimal yield reductions (up to 5.15% only), with very low viral titer. In contrast, the photosynthetic efficiency was significantly declined in susceptible genotypes, which also experienced yield losses up to 58.84% with very high viral titer. Correlation coefficient and principal component analysis (PCA) revealed a strong association among the CF parameters, disease severity, viral titer, and yield losses. This emphasizes the utility of CF as a valuable tool for assessing resistance through physiological responses to PVY. Study demonstrates that photochemistry, heat dissipation, and fluorescence emission patterns of PS-II effectively differentiate resistant and susceptible genotypes. Moreover, this study highlights the potential of integrating physiological assessments with molecular diagnostics in large-scale preliminary screening to identify and develop PVY-resistant potato genotypes.
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Affiliation(s)
- Rakesh Belludi
- Department of Plant Pathology, Punjab Agricultural University, Ludhiana, Punjab, India.
| | - Abhishek Sharma
- Department of Vegetable Sciences, Punjab Agricultural University, Ludhiana, Punjab, India.
| | - Sat Pal Sharma
- Department of Vegetable Sciences, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Gutha Venkata Ramesh
- Department of Plant Pathology, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Santosh Gudi
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
- Department of Plant Pathology, North Dakota State University, Fargo, ND, USA
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Bashandy SR, Mohamed OA, Abdalla OA, Elfarash A, Abd-Alla MH. Harnessing plant growth-promoting bacteria to combat watermelon mosaic virus in squash. Sci Rep 2025; 15:9440. [PMID: 40108347 PMCID: PMC11923214 DOI: 10.1038/s41598-025-92268-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Accepted: 02/26/2025] [Indexed: 03/22/2025] Open
Abstract
Plant diseases significantly threaten global food security, with viral infections, particularly Watermelon Mosaic Virus (WMV), causing substantial losses in economically important crops such as squash. This study aims to investigate the efficacy of beneficial bacteria isolated from various plants in promoting growth and mitigating the effects of WMV in squash. Understanding the interactions between plants and beneficial microbes could provide sustainable solutions for managing viral infections in agriculture. Sixty-two bacterial isolates were obtained from the rhizosphere of basil, mint, thyme, and squash plants. Among these, six strains exhibited notable plant growth-promoting activities, including the synthesis of indole acetic acid, solubilization of phosphate and zinc, ammonia production, and activity of 1-aminocyclopropane-1-carboxylate deaminase (ACCD). Morphological observations and 16S rRNA gene sequencing identified these isolates as Pseudomonas indica, Bacillus paramycoides, Bacillus thuringiensis, Bacillus mycoides, Paenibacillus glucanolyticus, and Niallia circulans. In pot experiments, squash plants inoculated with these bacterial strains demonstrated significant reductions in disease severity after being infected with WMV. Specifically, foliar applications of the bacteria resulted in the following reductions in disease severity: B. mycoides (87%), B. thuringiensis (73%), Paenibacillus glucanolyticus (73%), Niallia circulans (70%), B. paramycoides (65%), and Pseudomonas indica (65%). Additionally, plants treated with B. mycoides showed increased plant height and shoot dry weight, indicating enhanced growth performance relative to infected controls. Statistical analysis revealed that these growth promotions and disease severity reduction were significant (p < 0.05). GC-MS analysis of the six bacterial strains revealed a diverse array of 73 chemical metabolites, including common compounds such as 9-Octadecenoic acid (Z), benzene derivatives, and cyclopentanones. These findings suggest shared metabolic pathways among the strains and indicate potential roles in ecological interactions, plant defense mechanisms, and antiviral properties. These metabolites likely contribute to the observed reductions in viral severity and enhance plant resilience. The study indicates that inoculating squash plants with specific beneficial bacteria, especially B. mycoides, through foliar or soil application can significantly decrease the severity of WMV and promote plant growth. This approach offers an environmentally friendly alternative to chemical antiviral treatments and may reduce reliance on pesticides. This research highlights the potential of using plant growth-promoting bacteria (PGPB)as a sustainable approach to control viral infections in crops. Further field trials are necessary to PGPB validate the scalability of these findings and assess their effectiveness under diverse agricultural conditions. Incorporating these beneficial microbes into agricultural practices could enhance the resilience of cropping systems, ultimately fostering sustainable agriculture and enhancing food security.
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Affiliation(s)
- Shymaa R Bashandy
- Botany and Microbiology Department, Faculty of Science, Assiut University, Assiut, 71516, Egypt
| | | | - Osama A Abdalla
- Plant Pathology Department Faculty of Agriculture, Assiut University, Assiut, 71516, Egypt
| | - A Elfarash
- Genetics Department Faculty of Agriculture, Assiut University, Assiut, 71516, Egypt
| | - Mohamed Hemida Abd-Alla
- Botany and Microbiology Department, Faculty of Science, Assiut University, Assiut, 71516, Egypt.
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Stanbekova GE, Nadirova LT, Kryldakov RV, Iskakov BK, Zhigailov AV. First Detection and Molecular Characterization of Peach Latent Mosaic Viroid (PLMVd) in Kazakhstan. Pathogens 2025; 14:243. [PMID: 40137728 PMCID: PMC11945605 DOI: 10.3390/pathogens14030243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2025] [Revised: 02/24/2025] [Accepted: 03/01/2025] [Indexed: 03/29/2025] Open
Abstract
Viroids represent obligate plant pathogens composed exclusively of non-protein coding small single-stranded RNAs that cause high economic losses worldwide. A field survey was carried out to assess the incidence of the peach latent mosaic viroid (PLMVd) in southeastern Kazakhstan, the region of the country where fruit trees are mainly grown. Of 246 stone fruit trees, 20 (8.13%) were infected with the PLMVd. The incidence of the PLMVd in the peach (19.23%; 15/78) was significantly higher than that in the apricot (6.76%; 5/74; p = 0.0234). Eight of the detected viroids were cloned and used for full-genome sequencing. The nucleotide sequence similarity of the selected isolates found in Kazakhstan was 83.9-100%. A phylogenetic analysis indicated three clusters for the Kazakhstani isolates of the PLMVd. Three groups of Kazakhstani viroids differed in their predicted secondary structure. During the survey, the PLMVd was detected and genetically characterized for the first time in Kazakhstan. The obtained results indicate the need to develop state control measures for the PLMVd, including regular monitoring surveys. We identified several SNPs of the PLMVd that had not been previously described. The results may be useful in optimizing diagnostic approaches for detecting stone fruit viroids and preventing their spread through propagation material.
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Affiliation(s)
- Gulshan E. Stanbekova
- M. Aitkhozhin Institute of Molecular Biology and Biochemistry, 86 Dosmukhamedov Str., Almaty 050012, Kazakhstan (B.K.I.)
| | - Leila T. Nadirova
- M. Aitkhozhin Institute of Molecular Biology and Biochemistry, 86 Dosmukhamedov Str., Almaty 050012, Kazakhstan (B.K.I.)
- Biology Faculty, Al-Farabi Kazakh National University, 71 Al-Farabi Ave., Almaty 050040, Kazakhstan
| | - Ruslan V. Kryldakov
- M. Aitkhozhin Institute of Molecular Biology and Biochemistry, 86 Dosmukhamedov Str., Almaty 050012, Kazakhstan (B.K.I.)
| | - Bulat K. Iskakov
- M. Aitkhozhin Institute of Molecular Biology and Biochemistry, 86 Dosmukhamedov Str., Almaty 050012, Kazakhstan (B.K.I.)
| | - Andrey V. Zhigailov
- M. Aitkhozhin Institute of Molecular Biology and Biochemistry, 86 Dosmukhamedov Str., Almaty 050012, Kazakhstan (B.K.I.)
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9
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Melyan GH, Martirosyan YT, Sahakyan AJ, Sayadyan HY, Melikyan AS, Barseghyan AH, Vardanyan AS, Martirosyan HS, Harutyunyan MG, Mkrtchyan AL, Hakobjanyan IL, Dangyan KS, Terteryan KH, Khazaryan KA, Galstyan MH. Influence of Nutrient Medium Components on In Vitro Tuberization of Solanum tuberosum L. and Subsequent Minituber Production in Aeroponic and Greenhouse Conditions. Life (Basel) 2025; 15:241. [PMID: 40003649 PMCID: PMC11856352 DOI: 10.3390/life15020241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2024] [Revised: 01/27/2025] [Accepted: 02/01/2025] [Indexed: 02/27/2025] Open
Abstract
Potatoes, a vital global food crop, have shown remarkable adaptability, significantly contributing to food security. Technological advancements now enable their cultivation from soil-based systems to liquid synthetic nutrient media, even in artificial closed environments without natural light or fertile soil. This study examined the effects of Benzylaminopurine (BAP) and Kinetin (Kin) at concentrations ranging from 0 to 5 mg/L and sucrose concentrations ranging from 20 to 120 g/L on in vitro tuberization, focusing on microtuber size, weight, and tuberization rate. Nodal segments from virus-free 'Red Scarlet' in vitro potato plantlets were used as explants. These explants were cultured on Murashige and Skoog (MS) medium solidified with 0.5% agar. The study also compared minituber production efficiency under soil-based greenhouse and aeroponic conditions. The highest in vitro potato tuberization rate (90%) was achieved with 80 g/L sucrose and 3.0 mg/L BAP. After induction, virus-free microtubers were transferred to both greenhouse conditions and aeroponic systems for further assessment of minituber production and biochemical composition. These findings demonstrate the potential of aeroponics as a superior method for producing high-quality, pathogen-free minitubers. Aeroponics resulted in significantly higher minituber yields compared to soil-based greenhouse systems, offering a scalable and efficient solution for seed production.
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Affiliation(s)
- Gayane Hrant Melyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
- Institute of Molecular Biology, National Academy of Sciences of the Republic of Armenia (NAS RA), Hasratyan 7, Yerevan 0014, Armenia
| | - Yuri Tsatur Martirosyan
- All-Russian Research Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskaya St, 42, 117550 Moscow, Russia;
- Institute of Biochemical Physics (IBCP), RAS—Russian Academy of Sciences, Kosyagina Str. 4, 119334 Moscow, Russia
| | - Aghvan Jumshud Sahakyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Hovik Yakshibek Sayadyan
- Faculty of Geography and Geology, Yerevan State University, 1 Alex Manoogian, Yerevan 0025, Armenia
| | - Andreas Shmavon Melikyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Andranik Hakob Barseghyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
- SPS “Arm Biotechnologies” NAS RA, Yerevan 0056, Armenia
| | - Arayik Sajan Vardanyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Hamlet Sargis Martirosyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Margarita Gurgen Harutyunyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Anzhela Liparit Mkrtchyan
- Faculty of Agronomy, Armenian National Agrarian University (ANAU), Teryan 74 Str., Yerevan 0009, Armenia;
| | - Inna Lendrush Hakobjanyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Kima Seryozha Dangyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Khachik Harut Terteryan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Kamo Atam Khazaryan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
| | - Meruzhan Haykaram Galstyan
- Scientific Center of Agrobiotechnology, Branch of the Armenian National Agrarian University, 1 Isi le Mulino Str., Ejmiatsin 1101, Armenia; (G.H.M.); (A.J.S.); (A.S.M.); (A.H.B.); (A.S.V.); (H.S.M.); (M.G.H.); (I.L.H.); (K.S.D.); (K.H.T.); (K.A.K.); (M.H.G.)
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10
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De Silva A, Kim K, Weiland J, Hwang J, Chung J, Pereira HS, Patel TR, Teyra J, Patel A, Mira MM, Khajehpour M, Bolton M, Stasolla C, Sidhu SS, Mark BL. Suppressing Tymovirus replication in plants using a variant of ubiquitin. PLoS Pathog 2025; 21:e1012899. [PMID: 39869641 PMCID: PMC11819560 DOI: 10.1371/journal.ppat.1012899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2024] [Revised: 02/12/2025] [Accepted: 01/11/2025] [Indexed: 01/29/2025] Open
Abstract
RNA viruses have evolved numerous strategies to overcome host resistance and immunity, including the use of multifunctional proteases that not only cleave viral polyproteins during virus replication but also deubiquitinate cellular proteins to suppress ubiquitin (Ub)-mediated antiviral mechanisms. Here, we report an approach to attenuate the infection of Arabidopsis thaliana by Turnip Yellow Mosaic Virus (TYMV) by suppressing the polyprotein cleavage and deubiquitination activities of the TYMV protease (PRO). Performing selections using a library of phage-displayed Ub variants (UbVs) for binding to recombinant PRO yielded several UbVs that bound the viral protease with nanomolar affinities and blocked its function. The strongest binding UbV (UbV3) candidate had a EC50 of 0.3 nM and inhibited both polyprotein cleavage and DUB activity of PRO in vitro. X-ray crystal structures of UbV3 alone and in complex with PRO reveal that the inhibitor exists as a dimer that binds two copies of PRO. Consistent with our biochemical and structural findings, transgenic expression of UbV3 in the cytosol of A. thaliana suppressed TYMV replication in planta, with the reduction in viral load being correlated to UbV3 expression level. Our results demonstrate the potential of using UbVs to protect plants from tymovirus infection, a family of viruses that contain numerous members of significant agricultural concern, as well as other plant viruses that express functionally related proteases with deubiquitinating activity.
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Affiliation(s)
- Anuradha De Silva
- Department of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Kihun Kim
- Department of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - John Weiland
- Sugarbeet and Potato Research Unit, Edward T. Schafer Agricultural Research Center, USDA Agricultural Research Services, North Dakota, United States of America
| | - Jihyun Hwang
- Department of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Jacky Chung
- School of Pharmacy, University of Waterloo, Ontario, Canada
| | - Higor S. Pereira
- Alberta RNA Research and Training Institute, University of Lethbridge Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Trushar R. Patel
- Alberta RNA Research and Training Institute, University of Lethbridge Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Joan Teyra
- School of Pharmacy, University of Waterloo, Ontario, Canada
- Icosagen Cell Factory OÜ, Tartu, Estonia
| | - Ankoor Patel
- Department of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Mohammed M. Mira
- Department of Plant Science, Faculty of Agriculture, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Mazdak Khajehpour
- Department of Chemistry, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Melvin Bolton
- Sugarbeet and Potato Research Unit, Edward T. Schafer Agricultural Research Center, USDA Agricultural Research Services, North Dakota, United States of America
| | - Claudio Stasolla
- Department of Plant Science, Faculty of Agriculture, University of Manitoba, Winnipeg, Manitoba, Canada
| | | | - Brian L. Mark
- Department of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada
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11
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Deja-Sikora E, Gołębiewski M, Hrynkiewicz K. Transcriptomic responses of Solanum tuberosum cv. Pirol to arbuscular mycorrhiza and potato virus Y (PVY) infection. PLANT MOLECULAR BIOLOGY 2024; 114:123. [PMID: 39527333 PMCID: PMC11554710 DOI: 10.1007/s11103-024-01519-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 10/11/2024] [Indexed: 11/16/2024]
Abstract
Arbuscular mycorrhizal fungi (AMF) serve as both plant symbionts and allies in resisting pathogens and environmental stresses. Mycorrhizal colonization of plant roots can influence the outcomes of plant-pathogen interactions by enhancing specific host defense mechanisms. The transcriptional responses induced by AMF in virus-infected plants remain largely unexplored. In the presented study, we employed a comprehensive transcriptomic approach and qPCR to investigate the molecular determinants underlying the interaction between AMF and potato virus Y (PVY) in Solanum tuberosum L. Our primary goal was to identify the symbiosis- and defense-related determinants activated in mycorrhizal potatoes facing PVY. Through a comparative analysis of mRNA transcriptomes in experimental treatments comprising healthy and PVY-infected potatoes colonized by two AMF species, Rhizophagus regularis or Funneliformis mosseae, we unveiled the overexpression of genes associated with mycorrhiza, including nutrient exchange, lipid transfer, and cell wall remodeling. Furthermore, we identified several differentially expressed genes upregulated in all mycorrhizal treatments that encoded pathogenesis-related proteins involved in plant immune responses, thus verifying the bioprotective role of AMF. We investigated the relationship between mycorrhiza levels and PVY levels in potato leaves and roots. We found accumulation of the virus in the leaves of mycorrhizal plants, but our studies additionally showed a reduced PVY content in potato roots colonized by AMF, which has not been previously demonstrated. Furthermore, we observed that a virus-dependent reduction in nutrient exchange could occur in mycorrhizal roots in the presence of PVY. These findings provide an insights into the interplay between virus and AMF.
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Affiliation(s)
- Edyta Deja-Sikora
- Department of Microbiology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, Lwowska 1, 87-100, Torun, Poland.
| | - Marcin Gołębiewski
- Department of Plant Physiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, Lwowska 1, 87-100, Torun, Poland
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Wilenska 4, 87-100, Torun, Poland
| | - Katarzyna Hrynkiewicz
- Department of Microbiology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, Lwowska 1, 87-100, Torun, Poland
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12
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Abdelwahab Elansary DW, Gürcan K, Roumi V, Şimşek Ö. Efficacy of Plant Tissue Culture Techniques for Eliminating Black Mulberry Idaeovirus (BMIV) from Infected Black Mulberry ( Morus nigra). PLANTS (BASEL, SWITZERLAND) 2024; 13:2959. [PMID: 39519878 PMCID: PMC11548174 DOI: 10.3390/plants13212959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 10/01/2024] [Accepted: 10/03/2024] [Indexed: 11/16/2024]
Abstract
Obtaining virus-free plants is a crucial step in disease management that enables reliable and profitable fruit farming. The present study applied various in vitro virus elimination protocols, including apical shoot culture, chemotherapy, thermotherapy, cryotherapy, and their combination, to eliminate black mulberry Idaeovirus (BMIV) from sour black mulberry. First, a shoot tip (0.5-2 mm) culture protocol was optimized, and four ribavirin concentrations (0, 10, 20, and 30 mg/L) were investigated over five weeks as a form of chemotherapy (ch). For the first thermotherapy treatment (Ch + Th1st), chemotherapy treatment was followed by a gradual increase in the temperature (24-33 °C). In another experiment (Th2nd + Ch), in vitro shoots were incubated in the dark for two weeks at two different temperatures (35 ± 1 °C and 37 ± 1 °C, for one week each). Subsequently, the shoot tips were incubated with various ribavirin doses. Finally, cryotherapy (Cr) was used with or without immersing the shoot tips in liquid nitrogen. A two-step RT-PCR was performed to assess the presence of the virus in 7-8-week-old in vitro plants. Th2nd + Ch significantly increased the shoot tip burst and plant survival/morphogenesis compared to the other treatments. Except for the application of cryotherapy, the protocols eliminated BMIV in different proportions, and the highest virus elimination rate (50%) was obtained by applying 30 mg/L ribavirin during the Ch + Th1st treatment. These findings are essential in preventing the dissemination of the virus and enabling the safe movement of germplasm around the world.
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Affiliation(s)
- Doaa Waseem Abdelwahab Elansary
- Genome and Stem Cell Center, Department of Agricultural Biotechnology, Erciyes University, 38280 Kayseri, Türkiye; (D.W.A.E.); (V.R.)
- Department of Plant and Microbiology, Faculty of Science, Damanhour University, Damanhour 22511, Egypt
| | - Kahraman Gürcan
- Genome and Stem Cell Center, Department of Agricultural Biotechnology, Erciyes University, 38280 Kayseri, Türkiye; (D.W.A.E.); (V.R.)
| | - Vahid Roumi
- Genome and Stem Cell Center, Department of Agricultural Biotechnology, Erciyes University, 38280 Kayseri, Türkiye; (D.W.A.E.); (V.R.)
- Plant Protection Department, Faculty of Agriculture, University of Maragheh, Maragheh 55187, Iran
| | - Özhan Şimşek
- Department of Horticulture, Erciyes University, 38280 Kayseri, Türkiye;
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Nguyen HA, Anh Thi NP, Thien Trang NP, Ho TT, Trinh TND, Tran NKS, Trinh KTL. Recent advances in biosensors for screening plant pathogens. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:4485-4495. [PMID: 38940060 DOI: 10.1039/d4ay00766b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
Worldwide, plant pathogens have been a considerably important cause of economic loss in agriculture especially in the decades of agricultural intensification. The increasing losses in agriculture due to biotic plant diseases have drawn attention towards the development of plant disease analyzing methods. In this context, biosensors have emerged as significantly important tools which help farmers in on-field diagnosis of plant diseases. Compared to traditional methods, biosensors have outstanding features such as being highly sensitive and selective, cost-effective, portable, fast and user-friendly operation, and so on. There are three common types of biosensors including electrochemical, fluorescent, and colorimetric biosensors. In this review, some common biotic plant diseases caused by fungi, bacteria, and viruses are first summarized. Then, current advances in developing biosensors are discussed.
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Affiliation(s)
- Hanh An Nguyen
- Department of Molecular Biology, Institute of Food and Biotechnology, Can Tho University, Can Tho City, Vietnam
| | - Nguyen Pham Anh Thi
- Department of Molecular Biology, Institute of Food and Biotechnology, Can Tho University, Can Tho City, Vietnam
| | - Nguyen Pham Thien Trang
- Department of Molecular Biology, Institute of Food and Biotechnology, Can Tho University, Can Tho City, Vietnam
| | - Thanh-Tam Ho
- Institute for Global Health Innovations, Duy Tan University, Da Nang 550000, Viet Nam
- Biotechnology Department, College of Medicine and Pharmacy, Duy Tan University, Da Nang 550000, Viet Nam
| | - Thi Ngoc Diep Trinh
- Department of Materials Science, School of Applied Chemistry, Tra Vinh University, Vietnam
| | - Nguyen Khoi Song Tran
- NTT Hi-Tech Institute, Nguyen Tat Thanh University, Ward 13, District 04, Ho Chi Minh City 70000, Vietnam.
| | - Kieu The Loan Trinh
- BioNano Applications Research Center, Gachon University, 1342 Seongnam-daero, Sujeong-gu, Seongnam-si 13120, Republic of Korea.
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González-Pérez E, Chiquito-Almanza E, Villalobos-Reyes S, Canul-Ku J, Anaya-López JL. Diagnosis and Characterization of Plant Viruses Using HTS to Support Virus Management and Tomato Breeding. Viruses 2024; 16:888. [PMID: 38932180 PMCID: PMC11209215 DOI: 10.3390/v16060888] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 05/20/2024] [Accepted: 05/29/2024] [Indexed: 06/28/2024] Open
Abstract
Viral diseases pose a significant threat to tomato crops (Solanum lycopersicum L.), one of the world's most economically important vegetable crops. The limited genetic diversity of cultivated tomatoes contributes to their high susceptibility to viral infections. To address this challenge, tomato breeding programs must harness the genetic resources found in native populations and wild relatives. Breeding efforts may aim to develop broad-spectrum resistance against the virome. To identify the viruses naturally infecting 19 advanced lines, derived from native tomatoes, high-throughput sequencing (HTS) of small RNAs and confirmation with PCR and RT-PCR were used. Single and mixed infections with tomato mosaic virus (ToMV), tomato golden mosaic virus (ToGMoV), and pepper huasteco yellow vein virus (PHYVV) were detected. The complete consensus genomes of three variants of Mexican ToMV isolates were reconstructed, potentially forming a new ToMV clade with a distinct 3' UTR. The absence of reported mutations associated with resistance-breaking to ToMV suggests that the Tm-1, Tm-2, and Tm-22 genes could theoretically be used to confer resistance. However, the high mutation rates and a 63 nucleotide insertion in the 3' UTR, as well as amino acid mutations in the ORFs encoding 126 KDa, 183 KDa, and MP of Mexican ToMV isolates, suggest that it is necessary to evaluate the capacity of these variants to overcome Tm-1, Tm-2, and Tm-22 resistance genes. This evaluation, along with the characterization of advanced lines using molecular markers linked to these resistant genes, will be addressed in future studies as part of the breeding strategy. This study emphasizes the importance of using HTS for accurate identification and characterization of plant viruses that naturally infect tomato germplasm based on the consensus genome sequences. This study provides crucial insights to select appropriate disease management strategies and resistance genes and guide breeding efforts toward the development of virus-resistant tomato varieties.
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Affiliation(s)
| | - Elizabeth Chiquito-Almanza
- Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Celaya, Guanajuato 38110, Mexico; (E.G.-P.); (S.V.-R.); (J.C.-K.)
| | | | | | - José Luis Anaya-López
- Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Celaya, Guanajuato 38110, Mexico; (E.G.-P.); (S.V.-R.); (J.C.-K.)
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15
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Zheng X, Li Y, Liu Y. Plant Immunity against Tobamoviruses. Viruses 2024; 16:530. [PMID: 38675873 PMCID: PMC11054417 DOI: 10.3390/v16040530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 03/26/2024] [Accepted: 03/27/2024] [Indexed: 04/28/2024] Open
Abstract
Tobamoviruses are a group of plant viruses that pose a significant threat to agricultural crops worldwide. In this review, we focus on plant immunity against tobamoviruses, including pattern-triggered immunity (PTI), effector-triggered immunity (ETI), the RNA-targeting pathway, phytohormones, reactive oxygen species (ROS), and autophagy. Further, we highlight the genetic resources for resistance against tobamoviruses in plant breeding and discuss future directions on plant protection against tobamoviruses.
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Affiliation(s)
- Xiyin Zheng
- MOE Key Laboratory of Bioinformatics and Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
- Tsinghua-Peking Center for Life Sciences, Beijing 100084, China
| | - Yiqing Li
- MOE Key Laboratory of Bioinformatics and Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
- Tsinghua-Peking Center for Life Sciences, Beijing 100084, China
| | - Yule Liu
- MOE Key Laboratory of Bioinformatics and Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
- Tsinghua-Peking Center for Life Sciences, Beijing 100084, China
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16
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Villalba A, Martínez-Ispizua E, Morard M, Crespo-Sempere A, Albiach-Marti MR, Calatayud A, Penella C. Optimizing sweet potato production: insights into the interplay of plant sanitation, virus influence, and cooking techniques for enhanced crop quality and food security. FRONTIERS IN PLANT SCIENCE 2024; 15:1357611. [PMID: 38562562 PMCID: PMC10983796 DOI: 10.3389/fpls.2024.1357611] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Accepted: 02/23/2024] [Indexed: 04/04/2024]
Abstract
This study investigates the impact of sweet potato plant sanitation on the yield and external and internal quality root storage exploring the nutritional content affected by various cooking methods (raw, boiled, and oven-cooked). The presence of viruses, and concretely of the sweet potato leaf curl virus (SPLCV), in sweet potato propagation material is shown to significantly reduce yield and modify storage root quality. Notably, the research reveals a substantial improvement in crop yield and external quality, reinforcing the efficacy of plant sanitation methods, specifically apical meristem culture, in preserving the overall productivity of sweet potato crops. Furthermore, the investigation identifies a noteworthy decrease in starch content, suggesting a dynamic interaction between plant sanitation and starch metabolism in response to viral diseases. The study also delves into the alteration of mineral absorption patterns, shedding light on how plant sanitation influences the uptake of essential minerals in sweet potato storage roots. While the health status of the plants only slightly affected magnesium (Mg) and manganese (Mn) accumulation, indicating a potential resilience of mineral balance under virus-infected conditions. Moreover, the research identifies significant modifications in antioxidant levels, emphasizing the role of plant sanitation in enhancing the nutritional quality of sweet potatoes. Heat-treated storage roots, subjected to various cooking methods such as boiling and oven-cooking, exhibit notable differences in internal quality parameters. These differences include increased concentrations of total soluble solids (SS) and heightened levels of antioxidant compounds, particularly phenolic and flavonoid compounds. The observed increase in antioxidant capacity underscores the potential health-promoting benefits associated with plant sanitation practices. Overall, the study underscores the critical importance of plant sanitation in enhancing sweet potato production sustainability, contributing to food security, and supporting local agricultural economies. The results emphasize the need for further research to optimize plant sanitation methods and promote their widespread adoption globally, providing valuable insights into the complex relationships in food quality.
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Affiliation(s)
- Anna Villalba
- ValGenetics S.L., Parc Científic Universitat de València, CUE-3, Paterna, Valencia, Spain
| | - Eva Martínez-Ispizua
- Departamento de Horticultura, Centro de Citricultura y Producción Vegetal, Instituto Valenciano de Investigaciones Agrarias, Moncada, Valencia, Spain
| | - Miguel Morard
- ValGenetics S.L., Parc Científic Universitat de València, CUE-3, Paterna, Valencia, Spain
| | - Ana Crespo-Sempere
- ValGenetics S.L., Parc Científic Universitat de València, CUE-3, Paterna, Valencia, Spain
| | - María R. Albiach-Marti
- ValGenetics S.L., Parc Científic Universitat de València, CUE-3, Paterna, Valencia, Spain
| | - Angeles Calatayud
- Departamento de Horticultura, Centro de Citricultura y Producción Vegetal, Instituto Valenciano de Investigaciones Agrarias, Moncada, Valencia, Spain
| | - Consuelo Penella
- ValGenetics S.L., Parc Científic Universitat de València, CUE-3, Paterna, Valencia, Spain
- Departamento de Horticultura, Centro de Citricultura y Producción Vegetal, Instituto Valenciano de Investigaciones Agrarias, Moncada, Valencia, Spain
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17
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Metwally RA, Taha MA, El-Moaty NMA, Abdelhameed RE. Attenuation of Zucchini mosaic virus disease in cucumber plants by mycorrhizal symbiosis. PLANT CELL REPORTS 2024; 43:54. [PMID: 38315215 PMCID: PMC10844420 DOI: 10.1007/s00299-023-03138-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 12/29/2023] [Indexed: 02/07/2024]
Abstract
KEY MESSAGE Arbuscular mycorrhizal fungi generated systemic acquired resistance in cucumber to Zucchini yellow mosaic virus, indicating their prospective application in the soil as a sustainable, environmentally friendly approach to inhibit the spread of pathogens. The wide spread of plant pathogens affects the whole world, causing several plant diseases and threatening national food security as it disrupts the quantity and quality of economically important crops. Recently, environmentally acceptable mitigating practices have been required for sustainable agriculture, restricting the use of chemical fertilizers in agricultural areas. Herein, the biological control of Zucchini yellow mosaic virus (ZYMV) in cucumber (Cucumis sativus L.) plants using arbuscular mycorrhizal (AM) fungi was investigated. Compared to control plants, ZYMV-infected plants displayed high disease incidence (DI) and severity (DS) with various symptoms, including severe yellow mosaic, mottling and green blisters of leaves. However, AM fungal inoculation exhibited 50% inhibition for these symptoms and limited DS to 26% as compared to non-colonized ones. The detection of ZYMV by the Enzyme-Linked Immunosorbent Assay technique exhibited a significant reduction in AM-inoculated plants (5.23-fold) compared with non-colonized ones. Besides, mycorrhizal root colonization (F%) was slightly reduced by ZYMV infection. ZYMV infection decreased all growth parameters and pigment fractions and increased the malondialdehyde (MDA) content, however, these parameters were significantly enhanced and the MDA content was decreased by AM fungal colonization. Also, the protein, proline and antioxidant enzymes (POX and CAT) were increased with ZYMV infection with more enhancements due to AM root colonization. Remarkably, defence pathogenesis-related (PR) genes such as PR-a, PR-b, and PR-10 were quickly expressed in response to AM treatment. Our findings demonstrated the beneficial function of AM fungi in triggering the plant defence against ZYMV as they caused systemic acquired resistance in cucumber plants and supported their potential use in the soil as an environment-friendly method of hindering the spread of pathogenic microorganisms sustainably.
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Affiliation(s)
- Rabab A Metwally
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519, Egypt.
| | - Mohamed A Taha
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519, Egypt
| | - Nada M Abd El-Moaty
- Microbiology Department, Soil, Water and Environment Research Institute (SWERI), Agricultural Research Center, Giza, Egypt
| | - Reda E Abdelhameed
- Botany and Microbiology Department, Faculty of Science, Zagazig University, Zagazig, 44519, Egypt
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18
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Naveed H, Islam W, Jafir M, Andoh V, Chen L, Chen K. A Review of Interactions between Plants and Whitefly-Transmitted Begomoviruses. PLANTS (BASEL, SWITZERLAND) 2023; 12:3677. [PMID: 37960034 PMCID: PMC10648457 DOI: 10.3390/plants12213677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Revised: 10/22/2023] [Accepted: 10/23/2023] [Indexed: 11/15/2023]
Abstract
The transmission of plant viruses from infected to healthy host plants is a process in which insects play a major role, using various transmission strategies. Environmental factors have an impact on the transmission of viruses and the subsequent development of infections or diseases. When viruses are successful, plant virus diseases can reach epidemic proportions. Many plants across different regions are vulnerable to viral infections transmitted by the whitefly vector. Begomoviruses, which are transmitted by whiteflies, represent a significant threat to agriculture worldwide. The review highlights the mechanisms of virus acquisition and transmission by whiteflies and explores the factors influencing these interactions. Understanding the impacts of these changes is crucial for managing the spread of pests and mitigating damage to crops. It underscores the need for continued research to elucidate the mechanisms driving plant-insect-virus interactions and to identify new approaches for sustainable pest management.
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Affiliation(s)
- Hassan Naveed
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China;
- School of Life Sciences, Jiangsu University, Zhenjiang 212013, China;
| | - Waqar Islam
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China;
| | - Muhammad Jafir
- Department of Ecology, School of Resources and Environmental Engineering, Anhui University, Hefei 230601, China;
| | - Vivian Andoh
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China;
- School of Life Sciences, Jiangsu University, Zhenjiang 212013, China;
| | - Liang Chen
- School of Life Sciences, Jiangsu University, Zhenjiang 212013, China;
| | - Keping Chen
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China;
- School of Life Sciences, Jiangsu University, Zhenjiang 212013, China;
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