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For: Song M, Greenbaum J, Luttrell J, Zhou W, Wu C, Luo Z, Qiu C, Zhao LJ, Su KJ, Tian Q, Shen H, Hong H, Gong P, Shi X, Deng HW, Zhang C. An autoencoder-based deep learning method for genotype imputation. Front Artif Intell 2022;5:1028978. [PMID: 36406474 PMCID: PMC9671213 DOI: 10.3389/frai.2022.1028978] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 09/29/2022] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
1
Mowlaei ME, Li C, Jamialahmadi O, Dias R, Chen J, Jamialahmadi B, Rebbeck TR, Carnevale V, Kumar S, Shi X. STICI: Split-Transformer with integrated convolutions for genotype imputation. Nat Commun 2025;16:1218. [PMID: 39890780 PMCID: PMC11785734 DOI: 10.1038/s41467-025-56273-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Accepted: 01/08/2025] [Indexed: 02/03/2025]  Open
2
Naito T, Okada Y. Genotype imputation methods for whole and complex genomic regions utilizing deep learning technology. J Hum Genet 2024;69:481-486. [PMID: 38225263 PMCID: PMC11422162 DOI: 10.1038/s10038-023-01213-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 11/23/2023] [Accepted: 12/04/2023] [Indexed: 01/17/2024]
3
Kojima K, Tadaka S, Okamura Y, Kinoshita K. Two-stage strategy using denoising autoencoders for robust reference-free genotype imputation with missing input genotypes. J Hum Genet 2024;69:511-518. [PMID: 38918526 PMCID: PMC11422160 DOI: 10.1038/s10038-024-01261-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 04/16/2024] [Accepted: 05/13/2024] [Indexed: 06/27/2024]
4
Sharma A, Lysenko A, Jia S, Boroevich KA, Tsunoda T. Advances in AI and machine learning for predictive medicine. J Hum Genet 2024;69:487-497. [PMID: 38424184 PMCID: PMC11422165 DOI: 10.1038/s10038-024-01231-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 02/04/2024] [Accepted: 02/12/2024] [Indexed: 03/02/2024]
5
Liu A, Tian B, Qiu C, Su KJ, Jiang L, Zhao C, Song M, Liu Y, Qu G, Zhou Z, Zhang X, Gnanesh SSM, Thumbigere-Math V, Luo Z, Tian Q, Zhang LS, Wu C, Ding Z, Shen H, Deng HW. Multi-View Integrative Approach For Imputing Short-Chain Fatty Acids and Identifying Key factors predicting Blood SCFA. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.25.614767. [PMID: 39386638 PMCID: PMC11463355 DOI: 10.1101/2024.09.25.614767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 10/12/2024]
6
Huang L, Song M, Shen H, Hong H, Gong P, Deng HW, Zhang C. Deep Learning Methods for Omics Data Imputation. BIOLOGY 2023;12:1313. [PMID: 37887023 PMCID: PMC10604785 DOI: 10.3390/biology12101313] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/28/2023] [Accepted: 10/02/2023] [Indexed: 10/28/2023]
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