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Garwood TJ, Richards JE, Macchietto MG, Gerhold RW, Kania SA, Garbe JR, Fountain-Jones NM, Larsen PA, Wolf TM. A De Novo Whole Genome Assembly and Annotation of Parelaphostrongylus tenuis. J Nematol 2024; 56:20240009. [PMID: 38495933 PMCID: PMC10940269 DOI: 10.2478/jofnem-2024-0009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Indexed: 03/19/2024] Open
Abstract
Parelaphostrongylus tenuis causes ungulate morbidity and mortality in eastern and central North America, but no reference genome sequence exists to facilitate research. Here, we present a P. tenuis genome assembly and annotation, generated with PacBio and Illumina technologies. The assembly is 491 Mbp, with 7285 scaffolds and 185 kb N50.
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Affiliation(s)
- Tyler J. Garwood
- Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota-Twin Cities, Room 495 Animal Science/Veterinary Medicine Building, 1988 Fitch Avenue, St. Paul, MN, 55108
| | - Jessie E. Richards
- Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, University of Tennessee-Knoxville, 2407 River Drive, Knoxville, TN, 37996
| | - Marissa G. Macchietto
- Minnesota Supercomputing Institute, University of Minnesota-Twin Cities, 117 Pleasant Street SE, 547 Walter Library, Minneapolis, MN, 55455
| | - Richard W. Gerhold
- Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, University of Tennessee-Knoxville, 2407 River Drive, Knoxville, TN, 37996
| | - Stephen A. Kania
- Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, University of Tennessee-Knoxville, 2407 River Drive, Knoxville, TN, 37996
| | - John R. Garbe
- Genomics Center, University of Minnesota-Twin Cities, 2231 6th Street SE, Minneapolis, MN, 55455
| | | | - Peter A. Larsen
- Department of Veterinary and Biomedical Sciences, College of Veterinary Medicine, University of Minnesota-Twin Cities, Room 239B Veterinary Science Building, 1971 Commonwealth Avenue, Saint Paul, MN, 55108
| | - Tiffany M. Wolf
- Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota-Twin Cities, Room 495 Animal Science/Veterinary Medicine Building, 1988 Fitch Avenue, St. Paul, MN, 55108
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