1
|
Mehrnia SS, Safahi Z, Mousavi A, Panahandeh F, Farmani A, Yuan R, Rahmim A, Salmanpour MR. Landscape of 2D Deep Learning Segmentation Networks Applied to CT Scan from Lung Cancer Patients: A Systematic Review. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2025:10.1007/s10278-025-01458-x. [PMID: 40038137 DOI: 10.1007/s10278-025-01458-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2024] [Revised: 02/06/2025] [Accepted: 02/16/2025] [Indexed: 03/06/2025]
Abstract
BACKGROUND The increasing rates of lung cancer emphasize the need for early detection through computed tomography (CT) scans, enhanced by deep learning (DL) to improve diagnosis, treatment, and patient survival. This review examines current and prospective applications of 2D- DL networks in lung cancer CT segmentation, summarizing research, highlighting essential concepts and gaps; Methods: Following the Preferred Reporting Items for Systematic Reviews and Meta-Analysis guidelines, a systematic search of peer-reviewed studies from 01/2020 to 12/2024 on data-driven population segmentation using structured data was conducted across databases like Google Scholar, PubMed, Science Direct, IEEE (Institute of Electrical and Electronics Engineers) and ACM (Association for Computing Machinery) library. 124 studies met the inclusion criteria and were analyzed. RESULTS The LIDC-LIDR dataset was the most frequently used; The finding particularly relies on supervised learning with labeled data. The UNet model and its variants were the most frequently used models in medical image segmentation, achieving Dice Similarity Coefficients (DSC) of up to 0.9999. The reviewed studies primarily exhibit significant gaps in addressing class imbalances (67%), underuse of cross-validation (21%), and poor model stability evaluations (3%). Additionally, 88% failed to address the missing data, and generalizability concerns were only discussed in 34% of cases. CONCLUSIONS The review emphasizes the importance of Convolutional Neural Networks, particularly UNet, in lung CT analysis and advocates for a combined 2D/3D modeling approach. It also highlights the need for larger, diverse datasets and the exploration of semi-supervised and unsupervised learning to enhance automated lung cancer diagnosis and early detection.
Collapse
Affiliation(s)
- Somayeh Sadat Mehrnia
- Department of Integrative Oncology, Breast Cancer Research Center, Motamed Cancer Institute, ACECR, Tehran, Iran
- Technological Virtual Collaboration (TECVICO Corp.), Vancouver, BC, Canada
| | - Zhino Safahi
- Technological Virtual Collaboration (TECVICO Corp.), Vancouver, BC, Canada
- Department of Computer Engineering, University of Kurdistan, Sanandaj, Iran
| | - Amin Mousavi
- Technological Virtual Collaboration (TECVICO Corp.), Vancouver, BC, Canada
| | - Fatemeh Panahandeh
- Technological Virtual Collaboration (TECVICO Corp.), Vancouver, BC, Canada
| | - Arezoo Farmani
- Technological Virtual Collaboration (TECVICO Corp.), Vancouver, BC, Canada
| | - Ren Yuan
- Department of Radiology, University of British Columbia, Vancouver, BC, Canada
- BC Cancer, Vancouver Center, Vancouver, BC, Canada
| | - Arman Rahmim
- Department of Radiology, University of British Columbia, Vancouver, BC, Canada
- Department of Integrative Oncology, BC Cancer Research Institute, Vancouver, BC, V5Z 1L3, Canada
- Department of Physics & Astronomy, University of British Columbia, Vancouver, BC, Canada
| | - Mohammad R Salmanpour
- Technological Virtual Collaboration (TECVICO Corp.), Vancouver, BC, Canada.
- Department of Radiology, University of British Columbia, Vancouver, BC, Canada.
- Department of Integrative Oncology, BC Cancer Research Institute, Vancouver, BC, V5Z 1L3, Canada.
| |
Collapse
|
2
|
Yadav DP, Sharma B, Webber JL, Mehbodniya A, Chauhan S. EDTNet: A spatial aware attention-based transformer for the pulmonary nodule segmentation. PLoS One 2024; 19:e0311080. [PMID: 39546546 PMCID: PMC11567627 DOI: 10.1371/journal.pone.0311080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Accepted: 09/11/2024] [Indexed: 11/17/2024] Open
Abstract
Accurate segmentation of lung lesions in CT-scan images is essential to diagnose lung cancer. The challenges in lung nodule diagnosis arise due to their small size and diverse nature. We designed a transformer-based model EDTNet (Encoder Decoder Transformer Network) for PNS (Pulmonary Nodule Segmentation). Traditional CNN-based encoders and decoders are hindered by their inability to capture long-range spatial dependencies, leading to suboptimal performance in complex object segmentation tasks. To address the limitation, we leverage an enhanced spatial attention-based Vision Transformer (ViT) as an encoder and decoder in the EDTNet. The EDTNet integrates two successive transformer blocks, a patch-expanding layer, down-sampling layers, and up-sampling layers to improve segmentation capabilities. In addition, ESLA (Enhanced spatial aware local attention) and EGLA (Enhanced global aware local attention) blocks are added to provide attention to the spatial features. Furthermore, skip connections are introduced to facilitate symmetrical interaction between the corresponding encoder and decoder layer, enabling the retrieval of intricate details in the output. The EDTNet performance is compared with several models on DS1 and DS2, including Unet, ResUNet++, U-NET 3+, DeepLabV3+, SegNet, Trans-Unet, and Swin-UNet, demonstrates superior quantitative and visual results. On DS1, the EDTNet achieved 96.27%, 95.81%, 96.15% precision, IoU (Intersection over Union), and DSC (Sorensen-Dice coefficient). Moreover, the model has demonstrated sensitivity, IoU and SDC of 98.84%, 96.06% and 97.85% on DS2.
Collapse
Affiliation(s)
| | - Bhisham Sharma
- Chitkara University Institute of Engineering and Technology, Centre for Research Impact & Outcome, Chitkara University, Rajpura, Punjab, India
| | - Julian L. Webber
- Department of Electronics and Communication Engineering, Kuwait College of Science and Technology (KCST), Doha Area, Kuwait
| | - Abolfazl Mehbodniya
- Department of Electronics and Communication Engineering, Kuwait College of Science and Technology (KCST), Doha Area, Kuwait
| | - Shivank Chauhan
- Department of Computer Engineering & Applications, G.L.A. University, Mathura, India
| |
Collapse
|
3
|
Wang TW, Hong JS, Huang JW, Liao CY, Lu CF, Wu YT. Systematic review and meta-analysis of deep learning applications in computed tomography lung cancer segmentation. Radiother Oncol 2024; 197:110344. [PMID: 38806113 DOI: 10.1016/j.radonc.2024.110344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 05/20/2024] [Accepted: 05/22/2024] [Indexed: 05/30/2024]
Abstract
BACKGROUND Accurate segmentation of lung tumors on chest computed tomography (CT) scans is crucial for effective diagnosis and treatment planning. Deep Learning (DL) has emerged as a promising tool in medical imaging, particularly for lung cancer segmentation. However, its efficacy across different clinical settings and tumor stages remains variable. METHODS We conducted a comprehensive search of PubMed, Embase, and Web of Science until November 7, 2023. We assessed the quality of these studies by using the Checklist for Artificial Intelligence in Medical Imaging and the Quality Assessment of Diagnostic Accuracy Studies-2 tools. This analysis included data from various clinical settings and stages of lung cancer. Key performance metrics, such as the Dice similarity coefficient, were pooled, and factors affecting algorithm performance, such as clinical setting, algorithm type, and image processing techniques, were examined. RESULTS Our analysis of 37 studies revealed a pooled Dice score of 79 % (95 % CI: 76 %-83 %), indicating moderate accuracy. Radiotherapy studies had a slightly lower score of 78 % (95 % CI: 74 %-82 %). A temporal increase was noted, with recent studies (post-2022) showing improvement from 75 % (95 % CI: 70 %-81 %). to 82 % (95 % CI: 81 %-84 %). Key factors affecting performance included algorithm type, resolution adjustment, and image cropping. QUADAS-2 assessments identified ambiguous risks in 78 % of studies due to data interval omissions and concerns about generalizability in 8 % due to nodule size exclusions, and CLAIM criteria highlighted areas for improvement, with an average score of 27.24 out of 42. CONCLUSION This meta-analysis demonstrates DL algorithms' promising but varied efficacy in lung cancer segmentation, particularly higher efficacy noted in early stages. The results highlight the critical need for continued development of tailored DL models to improve segmentation accuracy across diverse clinical settings, especially in advanced cancer stages with greater challenges. As recent studies demonstrate, ongoing advancements in algorithmic approaches are crucial for future applications.
Collapse
Affiliation(s)
- Ting-Wei Wang
- Institute of Biophotonics, National Yang-Ming Chiao Tung University, Taipei, Taiwan; School of Medicine, National Yang-Ming Chiao Tung University, Taipei, Taiwan
| | - Jia-Sheng Hong
- Institute of Biophotonics, National Yang-Ming Chiao Tung University, Taipei, Taiwan
| | - Jing-Wen Huang
- Department of Radiation Oncology, Taichung Veterans General Hospital, Taichung 407, Taiwan
| | - Chien-Yi Liao
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming Chiao Tung University, Taipei, Taiwan; Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Texas, USA
| | - Chia-Feng Lu
- Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming Chiao Tung University, Taipei, Taiwan
| | - Yu-Te Wu
- Institute of Biophotonics, National Yang-Ming Chiao Tung University, Taipei, Taiwan; National Yang Ming Chiao Tung University, Brain Research Center, Taiwan.
| |
Collapse
|
4
|
Ma X, Song H, Jia X, Wang Z. An improved V-Net lung nodule segmentation model based on pixel threshold separation and attention mechanism. Sci Rep 2024; 14:4743. [PMID: 38413699 PMCID: PMC10899216 DOI: 10.1038/s41598-024-55178-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 02/21/2024] [Indexed: 02/29/2024] Open
Abstract
Accurate labeling of lung nodules in computed tomography (CT) images is crucial in early lung cancer diagnosis and before nodule resection surgery. However, the irregular shape of lung nodules in CT images and the complex lung environment make it much more challenging to segment lung nodules accurately. On this basis, we propose an improved V-Net segmentation method based on pixel threshold separation and attention mechanism for lung nodules. This method first offers a data augment strategy to solve the problem of insufficient samples in 3D medical datasets. In addition, we integrate the feature extraction module based on pixel threshold separation into the model to enhance the feature extraction ability under different thresholds on the one hand. On the other hand, the model introduces channel and spatial attention modules to make the model pay more attention to important semantic information and improve its generalization ability and accuracy. Experiments show that the Dice similarity coefficients of the improved model on the public datasets LUNA16 and LNDb are 94.9% and 81.1% respectively, and the sensitivities reach 92.7% and 76.9% respectively. which is superior to most existing UNet architecture models and comparable to the manual level segmentation results by medical technologists.
Collapse
Affiliation(s)
- Xiaopu Ma
- School of Computer Science and Technology, Nanyang Normal University, Nanyang, 473061, China.
| | - Handing Song
- School of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, China
| | - Xiao Jia
- School of Computer Science and Technology, Nanyang Normal University, Nanyang, 473061, China
| | - Zhan Wang
- School of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, China
| |
Collapse
|