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Haw YH, Lai KW, Chuah JH, Bejo SK, Husin NA, Hum YC, Yee PL, Tee CATH, Ye X, Wu X. Classification of basal stem rot using deep learning: a review of digital data collection and palm disease classification methods. PeerJ Comput Sci 2023; 9:e1325. [PMID: 37346512 PMCID: PMC10280561 DOI: 10.7717/peerj-cs.1325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 03/13/2023] [Indexed: 06/23/2023]
Abstract
Oil palm is a key agricultural resource in Malaysia. However, palm disease, most prominently basal stem rot caused at least RM 255 million of annual economic loss. Basal stem rot is caused by a fungus known as Ganoderma boninense. An infected tree shows few symptoms during early stage of infection, while potentially suffers an 80% lifetime yield loss and the tree may be dead within 2 years. Early detection of basal stem rot is crucial since disease control efforts can be done. Laboratory BSR detection methods are effective, but the methods have accuracy, biosafety, and cost concerns. This review article consists of scientific articles related to the oil palm tree disease, basal stem rot, Ganoderma Boninense, remote sensors and deep learning that are listed in the Web of Science since year 2012. About 110 scientific articles were found that is related to the index terms mentioned and 60 research articles were found to be related to the objective of this research thus included in this review article. From the review, it was found that the potential use of deep learning methods were rarely explored. Some research showed unsatisfactory results due to limitations on dataset. However, based on studies related to other plant diseases, deep learning in combination with data augmentation techniques showed great potentials, showing remarkable detection accuracy. Therefore, the feasibility of analyzing oil palm remote sensor data using deep learning models together with data augmentation techniques should be studied. On a commercial scale, deep learning used together with remote sensors and unmanned aerial vehicle technologies showed great potential in the detection of basal stem rot disease.
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Affiliation(s)
- Yu Hong Haw
- Department of Biomedical Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Khin Wee Lai
- Department of Biomedical Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Joon Huang Chuah
- Department of Electrical Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Siti Khairunniza Bejo
- Department of Biological and Agricultural Engineering, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Nur Azuan Husin
- Department of Biological and Agricultural Engineering, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Yan Chai Hum
- Department of Mechatronics and Biomedical Engineering, Universiti Tunku Abdul Rahman, Bandar Sungai Long, Cheras, Kajang, Selangor, Malaysia
| | - Por Lip Yee
- Department of Computer System and Technology, Universiti Malaya, Kuala Lumpur, Malaysia
| | | | - Xin Ye
- YLZ Eaccessy Information Technology Co., Ltd, Xiamen, China
| | - Xiang Wu
- School of Medical Information and Engineering, Xuzhou Medical University, Xuzhou, China
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Comparison of Field and SAR-Derived Descriptors in the Retrieval of Soil Moisture from Oil Palm Crops Using PALSAR-2. REMOTE SENSING 2021. [DOI: 10.3390/rs13234729] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Synthetic-aperture radar’s (SAR’s) capacity to resolve the cloud cover concerns encountered while gathering optical data has tremendous potential for soil moisture data retrieval using SAR data. It is possible to use SAR data to recover soil moisture because the backscatter coefficient is sensitive to both soil and vegetation by penetrating through the vegetation layer. This study investigated the feasibility of employing a SAR-derived radar vegetation index (RVI), the ratios of the backscatter coefficients using polarizations of HH/HV (RHH/HV) and HV/HH (RHH/HV) to an oil palm crops as vegetation indicators in the water cloud model (WCM) using phased-array L-band SAR-2 (PALSAR-2). These data were compared to the manual leaf area index (LAI) and a physical soil sampling method for computing soil moisture. The field data included the LAI input parameters and, more importantly, physical soil samples from which to calculate the soil moisture. The fieldwork was carried out in Chuping District, Perlis State, Malaysia. Corresponding PALSAR-2 data were collected on three observation dates in 2019: 17 January, 16 April, and 9 July. The results showed that the WCM modeled using the LAI under HV polarization demonstrated promising accuracy, with the root mean square error recorded as 0.033 m3/m3. This was comparable to the RVI and RHH/HV under HV polarization, which had accuracies of 0.031 and 0.049 m3/m3, respectively. The findings of this study suggest that SAR-based indicators, RHH/HV and RVI using PALSAR-2, can be used to reduce field-related input in the retrieval of soil moisture data using the WCM for oil palm crop.
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Sensitivity Analysis of Sentinel-1 Backscatter to Oil Palm Plantations at Pluriannual Scale: A Case Study in Gabon, Africa. REMOTE SENSING 2021. [DOI: 10.3390/rs13112075] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The present paper focuses on a sensitivity analysis of Sentinel-1 backscattering signatures from oil palm canopies cultivated in Gabon, Africa. We employed one Sentinel-1 image per year during the 2015–2021 period creating two separated time series for both the wet and dry seasons. The first images were almost simultaneously acquired to the initial growth stage of oil palm plants. The VH and VV backscattering signatures were analysed in terms of their corresponding statistics for each date and compared to the ones corresponding to tropical forests. The times series for the wet season showed that, in a time interval of 2–3 years after oil palm plantation, the VV/VH ratio in oil palm parcels increases above the one for forests. Backscattering and VV/VH ratio time series for the dry season exhibit similar patterns as for the wet season but with a more stable behaviour. The separability of oil palm and forest classes was also quantitatively addressed by means of the Jeffries–Matusita distance, which seems to point to the C-band VV/VH ratio as a potential candidate for discrimination between oil palms and natural forests, although further analysis must still be carried out. In addition, issues related to the effect of the number of samples in this particular scenario were also analysed. Overall, the outcomes presented here can contribute to the understanding of the radar signatures from this scenario and to potentially improve the accuracy of mapping techniques for this type of ecosystems by using remote sensing. Nevertheless, further research is still to be done as no classification method was performed due to the lack of the required geocoded reference map. In particular, a statistical assessment of the radar signatures should be carried out to statistically characterise the observed trends.
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