Ontology-Based Feature Selection: A Survey

The Role of AI in Drug Discovery

The emergence of Artificial Intelligence (AI) in drug discovery marks a pivotal shift in pharmaceutical research, blending sophisticated computational techniques with conventional scientific exploration to break through enduring obstacles. This review paper elucidates the multifaceted applications of AI across various stages of drug development, highlighting significant advancements and methodologies. It delves into AI's instrumental role in drug design, polypharmacology, chemical synthesis, drug repurposing, and the prediction of drug properties such as toxicity, bioactivity, and physicochemical characteristics. Despite AI's promising advancements, the paper also addresses the challenges and limitations encountered in the field, including data quality, generalizability, computational demands, and ethical considerations. By offering a comprehensive overview of AI's role in drug discovery, this paper underscores the technology's potential to significantly enhance drug development, while also acknowledging the hurdles that must be overcome to fully realize its benefits.

Role-Driven Clustering of Stakeholders: A Study of IoT Security Improvement

This study aims to address the challenges of managing the vast amount of data generated by Internet of Things (IoT) devices by categorizing stakeholders based on their roles in IoT security. As the number of connected devices increases, so do the associated security risks, highlighting the need for skilled stakeholders to mitigate these risks and prevent potential attacks. The study proposes a two-part approach, which involves clustering stakeholders according to their responsibilities and identifying relevant features. The main contribution of this research lies in enhancing decision-making processes within IoT security management. The proposed stakeholder categorization provides valuable insights into the diverse roles and responsibilities of stakeholders in IoT ecosystems, enabling a better understanding of their interrelationships. This categorization facilitates more effective decision making by considering the specific context and responsibilities of each stakeholder group. Additionally, the study introduces the concept of weighted decision making, incorporating factors such as role and importance. This approach enhances the decision-making process, enabling stakeholders to make more informed and context-aware decisions in the realm of IoT security management. The insights gained from this research have far-reaching implications. Not only will they benefit stakeholders involved in IoT security, but they will also assist policymakers and regulators in developing effective strategies to address the evolving challenges of IoT security.

Ontology-based feature engineering in machine learning workflows for heterogeneous epilepsy patient records

Biomedical ontologies are widely used to harmonize heterogeneous data and integrate large volumes of clinical data from multiple sources. This study analyzed the utility of ontologies beyond their traditional roles, that is, in addressing a challenging and currently underserved field of feature engineering in machine learning workflows. Machine learning workflows are being increasingly used to analyze medical records with heterogeneous phenotypic, genotypic, and related medical terms to improve patient care. We performed a retrospective study using neuropathology reports from the German Neuropathology Reference Center for Epilepsy Surgery at Erlangen, Germany. This cohort included 312 patients who underwent epilepsy surgery and were labeled with one or more diagnoses, including dual pathology, hippocampal sclerosis, malformation of cortical dysplasia, tumor, encephalitis, and gliosis. We modeled the diagnosis terms together with their microscopy, immunohistochemistry, anatomy, etiologies, and imaging findings using the description logic-based Web Ontology Language (OWL) in the Epilepsy and Seizure Ontology (EpSO). Three tree-based machine learning models were used to classify the neuropathology reports into one or more diagnosis classes with and without ontology-based feature engineering. We used five-fold cross validation to avoid overfitting with a fixed number of repetitions while leaving out one subset of data for testing, and we used recall, balanced accuracy, and hamming loss as performance metrics for the multi-label classification task. The epilepsy ontology-based feature engineering approach improved the performance of all the three learning models with an improvement of 35.7%, 54.5%, and 33.3% in logistics regression, random forest, and gradient tree boosting models respectively. The run time performance of all three models improved significantly with ontology-based feature engineering with gradient tree boosting model showing a 93.8% reduction in the time required for training and testing of the model. Although, all three models showed an overall improved performance across the three-performance metrics using ontology-based feature engineering, the rate of improvement was not consistent across all input features. To analyze this variation in performance, we computed feature importance scores and found that microscopy had the highest importance score across the three models, followed by imaging, immunohistochemistry, and anatomy in a decreasing order of importance scores. This study showed that ontologies have an important role in feature engineering to make heterogeneous clinical data accessible to machine learning models and also improve the performance of machine learning models in multilabel multiclass classification tasks.

A survey of semantic web (Web 3.0), its applications, challenges, future and its relation with Internet of things (IoT)

The Semantic Web (Web 3.0) is an advancement of the existing web in which knowledge is given well-defined importance, allowing people and machines to operate better. The Semantic Web is the next step in the evolution of the Web. The semantic web improves online technologies in need of generating, distributing, and linking material. In literature, multiple surveys have been done on the semantic web (Web 3.0), but those surveys are limited to some specific topics. According to the best of our understanding, none of the surveys provides a comprehensive study about the applications, challenges, and future of the semantic web along with its relationship with the Internet of things (IoT). The previous surveys focused on the Web 3.0 without touching on applications or challenges or focused on only the application prospect of the web 3.0, focused on the just the challenges, or focused on web 3.0 relationship with either internet of things or knowledge graphs but failed to touch the other important factors i.e., failed to provide comprehensive web 3.0 survey. This survey paper covers the gaps created from the previous survey papers in the same field and provides a comprehensive survey about web 3.0, a comparison between web 1.0, 2.0, and 3.0, the study of application and challenges in web 3.0, the relationship between web 3.0 with IoT and knowledge graph. Moreover, it focuses on the evolution of the web, and semantic web along with an explanation of the various layers, ontology tools, and semantic web tools with their comparison and semantic web service search. Despite all the shortcomings and challenges, the semantic web is moving in the right direction, and it is the future of the web.

A Contemporary Review on Utilizing Semantic Web Technologies in Healthcare, Virtual Communities, and Ontology-Based Information Processing Systems

The semantic web is an emerging technology that helps to connect different users to create their content and also facilitates the way of representing information in a manner that can be made understandable for computers. As the world is heading towards the fourth industrial revolution, the implicit utilization of artificial-intelligence-enabled semantic web technologies paves the way for many real-time application developments. The fundamental building blocks for the overwhelming utilization of semantic web technologies are ontologies, and it allows sharing as well as reusing the concepts in a standardized way so that the data gathered from heterogeneous sources receive a common nomenclature, and it paves the way for disambiguating the duplicates very easily. In this context, the right utilization of ontology capabilities would further strengthen its presence in many web-based applications such as e-learning, virtual communities, social media sites, healthcare, agriculture, etc. In this paper, we have given the comprehensive review of using the semantic web in the domain of healthcare, some virtual communities, and other information retrieval projects. As the role of semantic web is becoming pervasive in many domains, the demand for the semantic web in healthcare, virtual communities, and information retrieval has been gaining huge momentum in recent years. To obtain the correct sense of the meaning of the words or terms given in the textual content, it is deemed necessary to apply the right ontology to fix the ambiguity and shun any deviations that persist on the concepts. In this review paper, we have highlighted all the necessary information for a good understanding of the semantic web and its ontological frameworks.

DWSA: An Intelligent Document Structural Analysis Model for Information Extraction and Data Mining

The structure of a document contains rich information such as logical relations in context, hierarchy, affiliation, dependence, and applicability. It will greatly affect the accuracy of document information processing, particularly of legal documents and business contracts. Therefore, intelligent document structural analysis is important to information extraction and data mining. However, unlike the well-studied field of text semantic analysis, current work in document structural analysis is still scarce. In this paper, we propose an intelligent document structural analysis framework through data pre-processing, feature engineering, and structural classification with a dynamic sample weighting algorithm. As a typical application, we collect more than 11,000 insurance document content samples and carry out the machine learning experiments to check the efficiency of our framework. Meanwhile, to address the sample imbalance problem in the hierarchy classification task, a dynamic sample weighting algorithm is incorporated into our Dynamic Weighting Structural Analysis (DWSA) framework, in which the weights of different category tags according to the structural levels are iterated dynamically in training. Our results show that the DWSA has significantly improved the comprehensive accuracy and the classification F1-score of each category. The comprehensive accuracy is as high as 94.68% (3.36% absolute improvement) and the Macro F1-score is 88.29% (5.1% absolute improvement).