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Angelis D, Sofos F, Papastamatiou K, Karakasidis TE. Fluid Properties Extraction in Confined Nanochannels with Molecular Dynamics and Symbolic Regression Methods. MICROMACHINES 2023; 14:1446. [PMID: 37512757 PMCID: PMC10383280 DOI: 10.3390/mi14071446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Revised: 07/16/2023] [Accepted: 07/18/2023] [Indexed: 07/30/2023]
Abstract
In this paper, we propose an alternative road to calculate the transport coefficients of fluids and the slip length inside nano-conduits in a Poiseuille-like geometry. These are all computationally demanding properties that depend on dynamic, thermal, and geometrical characteristics of the implied fluid and the wall material. By introducing the genetic programming-based method of symbolic regression, we are able to derive interpretable data-based mathematical expressions based on previous molecular dynamics simulation data. Emphasis is placed on the physical interpretability of the symbolic expressions. The outcome is a set of mathematical equations, with reduced complexity and increased accuracy, that adhere to existing domain knowledge and can be exploited in fluid property interpolation and extrapolation, bypassing timely simulations when possible.
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Affiliation(s)
- Dimitrios Angelis
- Condensed Matter Physics Laboratory, Department of Physics, University of Thessaly, 35100 Lamia, Greece
| | - Filippos Sofos
- Condensed Matter Physics Laboratory, Department of Physics, University of Thessaly, 35100 Lamia, Greece
| | | | - Theodoros E Karakasidis
- Condensed Matter Physics Laboratory, Department of Physics, University of Thessaly, 35100 Lamia, Greece
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Leverant CJ, Greathouse JA, Harvey JA, Alam TM. Machine Learning Predictions of Simulated Self-Diffusion Coefficients for Bulk and Confined Pure Liquids. J Chem Theory Comput 2023. [PMID: 37192538 DOI: 10.1021/acs.jctc.2c01040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Diffusion properties of bulk fluids have been predicted using empirical expressions and machine learning (ML) models, suggesting that predictions of diffusion also should be possible for fluids in confined environments. The ability to quickly and accurately predict diffusion in porous materials would enable new discoveries and spur development in relevant technologies such as separations, catalysis, batteries, and subsurface applications. In this work, we apply artificial neural network (ANN) models to predict the simulated self-diffusion coefficients of real liquids in both bulk and pore environments. The training data sets were generated from molecular dynamics (MD) simulations of Lennard-Jones particles representing a diverse set of 14 molecules ranging from ammonia to dodecane over a range of liquid pressures and temperatures. Planar, cylindrical, and hexagonal pore models consisted of walls composed of carbon atoms. Our simple model for these liquids was primarily used to generate ANN training data, but the simulated self-diffusion coefficients of bulk liquids show excellent agreement with experimental diffusion coefficients. ANN models based on simple descriptors accurately reproduced the MD diffusion data for both bulk and confined liquids, including the trend of increased mobility in large pores relative to the corresponding bulk liquid.
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Affiliation(s)
- Calen J Leverant
- Nanoscale Sciences Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Jeffery A Greathouse
- Nuclear Waste Disposal Research & Analysis Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Jacob A Harvey
- Geochemistry Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Todd M Alam
- Department of Organic Materials Science, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
- ACC Consulting New Mexico, Cedar Crest, New Mexico 87008, United States
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Zeng F, Wan R, Xiao Y, Song F, Peng C, Liu H. Predicting the Self-Diffusion Coefficient of Liquids Based on Backpropagation Artificial Neural Network: A Quantitative Structure–Property Relationship Study. Ind Eng Chem Res 2022. [DOI: 10.1021/acs.iecr.2c03342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Fazhan Zeng
- School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai200237, China
| | - Ren Wan
- School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai200237, China
| | - Yongjun Xiao
- School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai200237, China
| | - Fan Song
- School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai200237, China
| | - Changjun Peng
- School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai200237, China
| | - Honglai Liu
- School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai200237, China
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Abstract
Computational methods in fluid research have been progressing during the past few years, driven by the incorporation of massive amounts of data, either in textual or graphical form, generated from multi-scale simulations, laboratory experiments, and real data from the field. Artificial Intelligence (AI) and its adjacent field, Machine Learning (ML), are about to reach standardization in most fields of computational science and engineering, as they provide multiple ways for extracting information from data that turn into knowledge, with the aid of portable software implementations that are easy to adopt. There is ample information on the historical and mathematical background of all aspects of AI/ML in the literature. Thus, this review article focuses mainly on their impact on fluid research at present, highlighting advances and opportunities, recognizing techniques and methods having been proposed, tabulating, and testing some of the most popular algorithms that have shown significant accuracy and performance on fluid applications. We also investigate algorithmic accuracy on several fluid datasets that correspond to simulation results for the transport properties of fluids and suggest that non-linear, decision tree-based methods have shown remarkable performance on reproducing fluid properties.
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Abstract
This work incorporates machine learning (ML) techniques, such as multivariate regression, the multi-layer perceptron, and random forest to predict the slip length at the nanoscale. Data points are collected both from our simulation data and data from the literature, and comprise Molecular Dynamics simulations of simple monoatomic, polar, and molecular liquids. Training and test points cover a wide range of input parameters which have been found to affect the slip length value, concerning dynamical and geometrical characteristics of the model, along with simulation parameters that constitute the simulation conditions. The aim of this work is to suggest an accurate and efficient procedure capable of reproducing physical properties, such as the slip length, acting parallel to simulation methods. Non-linear models, based on neural networks and decision trees, have been found to achieve better performance compared to linear regression methods. After the model is trained on representative simulation data, it is capable of accurately predicting the slip length values in regions between or in close proximity to the input data range, at the nanoscale. Results also reveal that, as channel dimensions increase, the slip length turns into a size-independent material property, affected mainly by wall roughness and wettability.
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Benos L, Tagarakis AC, Dolias G, Berruto R, Kateris D, Bochtis D. Machine Learning in Agriculture: A Comprehensive Updated Review. SENSORS (BASEL, SWITZERLAND) 2021; 21:3758. [PMID: 34071553 PMCID: PMC8198852 DOI: 10.3390/s21113758] [Citation(s) in RCA: 86] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 05/21/2021] [Accepted: 05/24/2021] [Indexed: 01/05/2023]
Abstract
The digital transformation of agriculture has evolved various aspects of management into artificial intelligent systems for the sake of making value from the ever-increasing data originated from numerous sources. A subset of artificial intelligence, namely machine learning, has a considerable potential to handle numerous challenges in the establishment of knowledge-based farming systems. The present study aims at shedding light on machine learning in agriculture by thoroughly reviewing the recent scholarly literature based on keywords' combinations of "machine learning" along with "crop management", "water management", "soil management", and "livestock management", and in accordance with PRISMA guidelines. Only journal papers were considered eligible that were published within 2018-2020. The results indicated that this topic pertains to different disciplines that favour convergence research at the international level. Furthermore, crop management was observed to be at the centre of attention. A plethora of machine learning algorithms were used, with those belonging to Artificial Neural Networks being more efficient. In addition, maize and wheat as well as cattle and sheep were the most investigated crops and animals, respectively. Finally, a variety of sensors, attached on satellites and unmanned ground and aerial vehicles, have been utilized as a means of getting reliable input data for the data analyses. It is anticipated that this study will constitute a beneficial guide to all stakeholders towards enhancing awareness of the potential advantages of using machine learning in agriculture and contributing to a more systematic research on this topic.
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Affiliation(s)
- Lefteris Benos
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Aristotelis C. Tagarakis
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Georgios Dolias
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Remigio Berruto
- Department of Agriculture, Forestry and Food Science (DISAFA), University of Turin, Largo Braccini 2, 10095 Grugliasco, Italy;
| | - Dimitrios Kateris
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Dionysis Bochtis
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
- FarmB Digital Agriculture P.C., Doiranis 17, GR 54639 Thessaloniki, Greece
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