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Khan AY, Luque-Nieto MA, Saleem MI, Nava-Baro E. X-Ray Image-Based Real-Time COVID-19 Diagnosis Using Deep Neural Networks (CXR-DNNs). J Imaging 2024; 10:328. [PMID: 39728225 PMCID: PMC11728291 DOI: 10.3390/jimaging10120328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Accepted: 12/12/2024] [Indexed: 12/28/2024] Open
Abstract
On 11 February 2020, the prevalent outbreak of COVID-19, a coronavirus illness, was declared a global pandemic. Since then, nearly seven million people have died and over 765 million confirmed cases of COVID-19 have been reported. The goal of this study is to develop a diagnostic tool for detecting COVID-19 infections more efficiently. Currently, the most widely used method is Reverse Transcription Polymerase Chain Reaction (RT-PCR), a clinical technique for infection identification. However, RT-PCR is expensive, has limited sensitivity, and requires specialized medical expertise. One of the major challenges in the rapid diagnosis of COVID-19 is the need for reliable imaging, particularly X-ray imaging. This work takes advantage of artificial intelligence (AI) techniques to enhance diagnostic accuracy by automating the detection of COVID-19 infections from chest X-ray (CXR) images. We obtained and analyzed CXR images from the Kaggle public database (4035 images in total), including cases of COVID-19, viral pneumonia, pulmonary opacity, and healthy controls. By integrating advanced techniques with transfer learning from pre-trained convolutional neural networks (CNNs), specifically InceptionV3, ResNet50, and Xception, we achieved an accuracy of 95%, significantly higher than the 85.5% achieved with ResNet50 alone. Additionally, our proposed method, CXR-DNNs, can accurately distinguish between three different types of chest X-ray images for the first time. This computer-assisted diagnostic tool has the potential to significantly enhance the speed and accuracy of COVID-19 diagnoses.
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Affiliation(s)
- Ali Yousuf Khan
- Telecommunications Engineering School, University of Malaga, 29010 Malaga, Spain;
| | | | - Muhammad Imran Saleem
- Department of Software Engineering, Sir Syed University of Engineering & Technology, Karachi 75300, Pakistan;
| | - Enrique Nava-Baro
- Institute of Oceanic Engineering Research, University of Malaga, 29010 Malaga, Spain;
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2
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Hong Q, Lin L, Li Z, Li Q, Yao J, Wu Q, Liu K, Tian J. A Distance Transformation Deep Forest Framework With Hybrid-Feature Fusion for CXR Image Classification. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024; 35:14633-14644. [PMID: 37285251 DOI: 10.1109/tnnls.2023.3280646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Detecting pneumonia, especially coronavirus disease 2019 (COVID-19), from chest X-ray (CXR) images is one of the most effective ways for disease diagnosis and patient triage. The application of deep neural networks (DNNs) for CXR image classification is limited due to the small sample size of the well-curated data. To tackle this problem, this article proposes a distance transformation-based deep forest framework with hybrid-feature fusion (DTDF-HFF) for accurate CXR image classification. In our proposed method, hybrid features of CXR images are extracted in two ways: hand-crafted feature extraction and multigrained scanning. Different types of features are fed into different classifiers in the same layer of the deep forest (DF), and the prediction vector obtained at each layer is transformed to form distance vector based on a self-adaptive scheme. The distance vectors obtained by different classifiers are fused and concatenated with the original features, then input into the corresponding classifier at the next layer. The cascade grows until DTDF-HFF can no longer gain benefits from the new layer. We compare the proposed method with other methods on the public CXR datasets, and the experimental results show that the proposed method can achieve state-of-the art (SOTA) performance. The code will be made publicly available at https://github.com/hongqq/DTDF-HFF.
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Qayyum A, Benzinou A, Saidani O, Alhayan F, Khan MA, Masood A, Mazher M. Assessment and classification of COVID-19 DNA sequence using pairwise features concatenation from multi-transformer and deep features with machine learning models. SLAS Technol 2024; 29:100147. [PMID: 38796034 DOI: 10.1016/j.slast.2024.100147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 03/31/2024] [Accepted: 05/22/2024] [Indexed: 05/28/2024]
Abstract
The 2019 novel coronavirus (renamed SARS-CoV-2, and generally referred to as the COVID-19 virus) has spread to 184 countries with over 1.5 million confirmed cases. Such a major viral outbreak demands early elucidation of taxonomic classification and origin of the virus genomic sequence, for strategic planning, containment, and treatment. The emerging global infectious COVID-19 disease by novel Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) presents critical threats to global public health and the economy since it was identified in late December 2019 in China. The virus has gone through various pathways of evolution. Due to the continued evolution of the SARS-CoV-2 pandemic, researchers worldwide are working to mitigate, suppress its spread, and better understand it by deploying deep learning and machine learning approaches. In a general computational context for biomedical data analysis, DNA sequence classification is a crucial challenge. Several machine and deep learning techniques have been used in recent years to complete this task with some success. The classification of DNA sequences is a key research area in bioinformatics as it enables researchers to conduct genomic analysis and detect possible diseases. In this paper, three state-of-the-art deep learning-based models are proposed using two DNA sequence conversion methods. We also proposed a novel multi-transformer deep learning model and pairwise features fusion technique for DNA sequence classification. Furthermore, deep features are extracted from the last layer of the multi-transformer and used in machine-learning models for DNA sequence classification. The k-mer and one-hot encoding sequence conversion techniques have been presented. The proposed multi-transformer achieved the highest performance in COVID DNA sequence classification. Automatic identification and classification of viruses are essential to avoid an outbreak like COVID-19. It also helps in detecting the effect of viruses and drug design.
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Affiliation(s)
- Abdul Qayyum
- National Heart and Lung Institute, Imperial College London, London, United Kingdom
| | | | - Oumaima Saidani
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh 11671, Saudi Arabia.
| | - Fatimah Alhayan
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh 11671, Saudi Arabia.
| | - Muhammad Attique Khan
- Department of Computer Science and Mathematics, Lebanese American University, Beirut, Lebanon
| | - Anum Masood
- Department of Physics, Norwegian University of Science and Technology, Trondheim NO-7491, Norway.
| | - Moona Mazher
- Centre for Medical Image Computing, Department of Computer Science, University College London, London, United Kingdom
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Qiu Y, Liu Y, Li S, Xu J. MiniSeg: An Extremely Minimum Network Based on Lightweight Multiscale Learning for Efficient COVID-19 Segmentation. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024; 35:8570-8584. [PMID: 37015641 DOI: 10.1109/tnnls.2022.3230821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
The rapid spread of the new pandemic, i.e., coronavirus disease 2019 (COVID-19), has severely threatened global health. Deep-learning-based computer-aided screening, e.g., COVID-19 infected area segmentation from computed tomography (CT) image, has attracted much attention by serving as an adjunct to increase the accuracy of COVID-19 screening and clinical diagnosis. Although lesion segmentation is a hot topic, traditional deep learning methods are usually data-hungry with millions of parameters, easy to overfit under limited available COVID-19 training data. On the other hand, fast training/testing and low computational cost are also necessary for quick deployment and development of COVID-19 screening systems, but traditional methods are usually computationally intensive. To address the above two problems, we propose MiniSeg, a lightweight model for efficient COVID-19 segmentation from CT images. Our efforts start with the design of an attentive hierarchical spatial pyramid (AHSP) module for lightweight, efficient, effective multiscale learning that is essential for image segmentation. Then, we build a two-path (TP) encoder for deep feature extraction, where one path uses AHSP modules for learning multiscale contextual features and the other is a shallow convolutional path for capturing fine details. The two paths interact with each other for learning effective representations. Based on the extracted features, a simple decoder is added for COVID-19 segmentation. For comparing MiniSeg to previous methods, we build a comprehensive COVID-19 segmentation benchmark. Extensive experiments demonstrate that the proposed MiniSeg achieves better accuracy because its only 83k parameters make it less prone to overfitting. Its high efficiency also makes it easy to deploy and develop. The code has been released at https://github.com/yun-liu/MiniSeg.
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Song C, Liu T, Wang H, Shi H, Jiao Z. Multi-modal feature selection with self-expression topological manifold for end-stage renal disease associated with mild cognitive impairment. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:14827-14845. [PMID: 37679161 DOI: 10.3934/mbe.2023664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/09/2023]
Abstract
Effectively selecting discriminative brain regions in multi-modal neuroimages is one of the effective means to reveal the neuropathological mechanism of end-stage renal disease associated with mild cognitive impairment (ESRDaMCI). Existing multi-modal feature selection methods usually depend on the Euclidean distance to measure the similarity between data, which tends to ignore the implied data manifold. A self-expression topological manifold based multi-modal feature selection method (SETMFS) is proposed to address this issue employing self-expression topological manifold. First, a dynamic brain functional network is established using functional magnetic resonance imaging (fMRI), after which the betweenness centrality is extracted. The feature matrix of fMRI is constructed based on this centrality measure. Second, the feature matrix of arterial spin labeling (ASL) is constructed by extracting the cerebral blood flow (CBF). Then, the topological relationship matrices are constructed by calculating the topological relationship between each data point in the two feature matrices to measure the intrinsic similarity between the features, respectively. Subsequently, the graph regularization is utilized to embed the self-expression model into topological manifold learning to identify the linear self-expression of the features. Finally, the selected well-represented feature vectors are fed into a multicore support vector machine (MKSVM) for classification. The experimental results show that the classification performance of SETMFS is significantly superior to several state-of-the-art feature selection methods, especially its classification accuracy reaches 86.10%, which is at least 4.34% higher than other comparable methods. This method fully considers the topological correlation between the multi-modal features and provides a reference for ESRDaMCI auxiliary diagnosis.
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Affiliation(s)
- Chaofan Song
- School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China
| | - Tongqiang Liu
- Department of Nephrology, The Affiliated Changzhou No.2 People's Hospital of Nanjing Medical University, Changzhou 213003, China
| | - Huan Wang
- School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China
| | - Haifeng Shi
- Department of Radiology, The Affiliated Changzhou No.2 People's Hospital of Nanjing Medical University, Changzhou 213003, China
| | - Zhuqing Jiao
- School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China
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Okeibunor JC, Jaca A, Iwu-Jaja CJ, Idemili-Aronu N, Ba H, Zantsi ZP, Ndlambe AM, Mavundza E, Muneene D, Wiysonge CS, Makubalo L. The use of artificial intelligence for delivery of essential health services across WHO regions: a scoping review. Front Public Health 2023; 11:1102185. [PMID: 37469694 PMCID: PMC10352788 DOI: 10.3389/fpubh.2023.1102185] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 06/19/2023] [Indexed: 07/21/2023] Open
Abstract
Background Artificial intelligence (AI) is a broad outlet of computer science aimed at constructing machines capable of simulating and performing tasks usually done by human beings. The aim of this scoping review is to map existing evidence on the use of AI in the delivery of medical care. Methods We searched PubMed and Scopus in March 2022, screened identified records for eligibility, assessed full texts of potentially eligible publications, and extracted data from included studies in duplicate, resolving differences through discussion, arbitration, and consensus. We then conducted a narrative synthesis of extracted data. Results Several AI methods have been used to detect, diagnose, classify, manage, treat, and monitor the prognosis of various health issues. These AI models have been used in various health conditions, including communicable diseases, non-communicable diseases, and mental health. Conclusions Presently available evidence shows that AI models, predominantly deep learning, and machine learning, can significantly advance medical care delivery regarding the detection, diagnosis, management, and monitoring the prognosis of different illnesses.
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Affiliation(s)
| | - Anelisa Jaca
- Cochrane South Africa, South African Medical Research Council, Cape Town, South Africa
| | | | - Ngozi Idemili-Aronu
- Department of Sociology/Anthropology, University of Nigeria, Nsukka, Nigeria
| | - Housseynou Ba
- World Health Organization Regional Office for Africa, Brazzaville, Republic of Congo
| | - Zukiswa Pamela Zantsi
- Cochrane South Africa, South African Medical Research Council, Cape Town, South Africa
| | - Asiphe Mavis Ndlambe
- Cochrane South Africa, South African Medical Research Council, Cape Town, South Africa
| | - Edison Mavundza
- World Health Organization Regional Office for Africa, Brazzaville, Republic of Congo
| | | | - Charles Shey Wiysonge
- Cochrane South Africa, South African Medical Research Council, Cape Town, South Africa
- HIV and Other Infectious Diseases Research Unit, South African Medical Research Council, Durban, South Africa
| | - Lindiwe Makubalo
- World Health Organization Regional Office for Africa, Brazzaville, Republic of Congo
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7
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Althaqafi T, AL-Ghamdi ASALM, Ragab M. Artificial Intelligence Based COVID-19 Detection and Classification Model on Chest X-ray Images. Healthcare (Basel) 2023; 11:1204. [PMID: 37174746 PMCID: PMC10177894 DOI: 10.3390/healthcare11091204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 04/06/2023] [Accepted: 04/18/2023] [Indexed: 05/15/2023] Open
Abstract
Diagnostic and predictive models of disease have been growing rapidly due to developments in the field of healthcare. Accurate and early diagnosis of COVID-19 is an underlying process for controlling the spread of this deadly disease and its death rates. The chest radiology (CT) scan is an effective device for the diagnosis and earlier management of COVID-19, meanwhile, the virus mainly targets the respiratory system. Chest X-ray (CXR) images are extremely helpful in the effective diagnosis of COVID-19 due to their rapid outcomes, cost-effectiveness, and availability. Although the radiological image-based diagnosis method seems faster and accomplishes a better recognition rate in the early phase of the epidemic, it requires healthcare experts to interpret the images. Thus, Artificial Intelligence (AI) technologies, such as the deep learning (DL) model, play an integral part in developing automated diagnosis process using CXR images. Therefore, this study designs a sine cosine optimization with DL-based disease detection and classification (SCODL-DDC) for COVID-19 on CXR images. The proposed SCODL-DDC technique examines the CXR images to identify and classify the occurrence of COVID-19. In particular, the SCODL-DDC technique uses the EfficientNet model for feature vector generation, and its hyperparameters can be adjusted by the SCO algorithm. Furthermore, the quantum neural network (QNN) model can be employed for an accurate COVID-19 classification process. Finally, the equilibrium optimizer (EO) is exploited for optimum parameter selection of the QNN model, showing the novelty of the work. The experimental results of the SCODL-DDC method exhibit the superior performance of the SCODL-DDC technique over other approaches.
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Affiliation(s)
- Turki Althaqafi
- Information Systems Department, HECI School, Dar Al-Hekma University, Jeddah 34801, Saudi Arabia
| | - Abdullah S. AL-Malaise AL-Ghamdi
- Information Systems Department, HECI School, Dar Al-Hekma University, Jeddah 34801, Saudi Arabia
- Information Systems Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Mahmoud Ragab
- Information Technology Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
- Mathematics Department, Faculty of Science, Al-Azhar University, Naser City 11884, Cairo, Egypt
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8
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Shen T, Huang F, Zhang X. CT medical image segmentation algorithm based on deep learning technology. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:10954-10976. [PMID: 37322967 DOI: 10.3934/mbe.2023485] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
For the problems of blurred edges, uneven background distribution, and many noise interferences in medical image segmentation, we proposed a medical image segmentation algorithm based on deep neural network technology, which adopts a similar U-Net backbone structure and includes two parts: encoding and decoding. Firstly, the images are passed through the encoder path with residual and convolutional structures for image feature information extraction. We added the attention mechanism module to the network jump connection to address the problems of redundant network channel dimensions and low spatial perception of complex lesions. Finally, the medical image segmentation results are obtained using the decoder path with residual and convolutional structures. To verify the validity of the model in this paper, we conducted the corresponding comparative experimental analysis, and the experimental results show that the DICE and IOU of the proposed model are 0.7826, 0.9683, 0.8904, 0.8069, and 0.9462, 0.9537 for DRIVE, ISIC2018 and COVID-19 CT datasets, respectively. The segmentation accuracy is effectively improved for medical images with complex shapes and adhesions between lesions and normal tissues.
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Affiliation(s)
- Tongping Shen
- School of Information Engineering, Anhui University of Chinese Medicine, Hefei, 230012, China
- Graduate School, Angeles University Foundation, Angeles 2009, Philippines
| | - Fangliang Huang
- School of Information Engineering, Anhui University of Chinese Medicine, Hefei, 230012, China
| | - Xusong Zhang
- Graduate School, Angeles University Foundation, Angeles 2009, Philippines
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9
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Ramalakshmi K, Srinivasa Raghavan V. Enhanced prediction using deep neural network-based image classification. THE IMAGING SCIENCE JOURNAL 2023. [DOI: 10.1080/13682199.2023.2183621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
Affiliation(s)
- K. Ramalakshmi
- Electronics and Communication Engineering, P.S.R. Engineering College, Sivakasi, Tamil Nadu, India
| | - V. Srinivasa Raghavan
- Electronics and Communication Engineering, Theni Kammavar Sangam College of Technology, Theni, Tamil Nadu, India
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10
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Khishe M. An automatic COVID-19 diagnosis from chest X-ray images using a deep trigonometric convolutional neural network. THE IMAGING SCIENCE JOURNAL 2023. [DOI: 10.1080/13682199.2023.2178094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
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11
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Suba S, Muthulakshmi M. A systematic review: Chest radiography images (X-ray images) analysis and COVID-19 categorization diagnosis using artificial intelligence techniques. NETWORK (BRISTOL, ENGLAND) 2023; 34:26-64. [PMID: 36420865 DOI: 10.1080/0954898x.2022.2147231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 10/27/2022] [Accepted: 11/08/2022] [Indexed: 06/16/2023]
Abstract
COVID-19 pandemic created a turmoil across nations due to Severe Acute Respiratory Syndrome Corona virus-1(SARS - Co-V-2). The severity of COVID-19 symptoms is starting from cold, breathing problems, issues in respiratory system which may also lead to life threatening situations. This disease is widely contaminating and transmitted from man-to-man. The contamination is spreading when the human organs like eyes, nose, and mouth get in contact with contaminated fluids. This virus can be screened through performing a nasopharyngeal swab test which is time consuming. So the physicians are preferring the fast detection methods like chest radiography images and CT scans. At times some confusion in finding out the accurate disorder from chest radiography images can happen. To overcome this issue this study reviews several deep learning and machine learning procedures to be implemented in X-ray images of chest. This also helps the professionals to find out the other types of malfunctions happening in the chest other than COVID-19 also. This review can act as a guidance to the doctors and radiologists in identifying the COVID-19 and other types of viruses causing illness in the human anatomy and can provide aid soon.
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Affiliation(s)
- Saravanan Suba
- Department of Computer Science, Kamarajar Government Arts College, Tirunelveli, Surandai 627859, India
| | - M Muthulakshmi
- Department of Computer Science, Kamarajar Government Arts College, Tirunelveli, Surandai 627859, India
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12
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An intelligent deep convolutional network based COVID-19 detection from chest X-rays. ALEXANDRIA ENGINEERING JOURNAL 2023; 64:399-417. [PMCID: PMC9472582 DOI: 10.1016/j.aej.2022.09.016] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 08/30/2022] [Accepted: 09/07/2022] [Indexed: 04/05/2025]
Abstract
Coronavirus disease-2019 (COVID-19) seems to be a fast spreading contagious illness that affects both humans and animals. This catastrophic deadly virus has an impact on people's daily lives, their wellbeing, and a nation's economy. According to a clinical research of COVID-19 affected patients, these individuals have been most commonly infected with a lung illness after coming into touch with the virus. A chest X-ray (also known as radiography) or a chest CT scan seems to be more efficient imaging techniques for detecting lung issues. Nonetheless, when compared to a chest CT, a significant chest X-ray remains a less expensive procedure. Thus, in this research, a novel Deep convolution neural network algorithm is presented to detect the COVID-19 from X-ray image. Moreover, to enhance diagnostics sensitivity and reduce error rate, a hybrid Two-step-AS clustering approach with Ensemble Bootstrap aggregating training and Multiple NN methods used. In addition, TSEBANN model has been employed to explore the qualification procedure effects. The proposed algorithm was trained before and after classification while compared to traditional Convolutional Neural Network (CNN). After, the process of pre-processing and feature extraction, the CNN strategy was adopted as an identification approach to categorize the information depending on Chest X-ray recognition. These examples were then classified using the CNN classification technique. The testing was conducted on the COVID-19 X-ray dataset, and the cross-validation approach was used to determine the model’s validity. The result indicated that a CNN system classification has attained an accuracy of 98.062 %.
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Lin C, Huang Y, Wang W, Feng S, Feng S. Lesion detection of chest X-Ray based on scalable attention residual CNN. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:1730-1749. [PMID: 36899506 DOI: 10.3934/mbe.2023079] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Most of the research on disease recognition in chest X-rays is limited to segmentation and classification, but the problem of inaccurate recognition in edges and small parts makes doctors spend more time making judgments. In this paper, we propose a lesion detection method based on a scalable attention residual CNN (SAR-CNN), which uses target detection to identify and locate diseases in chest X-rays and greatly improves work efficiency. We designed a multi-convolution feature fusion block (MFFB), tree-structured aggregation module (TSAM), and scalable channel and spatial attention (SCSA), which can effectively alleviate the difficulties in chest X-ray recognition caused by single resolution, weak communication of features of different layers, and lack of attention fusion, respectively. These three modules are embeddable and can be easily combined with other networks. Through a large number of experiments on the largest public lung chest radiograph detection dataset, VinDr-CXR, the mean average precision (mAP) of the proposed method was improved from 12.83% to 15.75% in the case of the PASCAL VOC 2010 standard, with IoU > 0.4, which exceeds the existing mainstream deep learning model. In addition, the proposed model has a lower complexity and faster reasoning speed, which is conducive to the implementation of computer-aided systems and provides referential solutions for relevant communities.
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Affiliation(s)
- Cong Lin
- College of Information and Communication Engineering, Hainan University, Haikou 570228, China
- College of Electronic and Information Engineering, Guangdong Ocean University, Zhanjiang 524088, China
| | - Yiquan Huang
- College of Electronic and Information Engineering, Guangdong Ocean University, Zhanjiang 524088, China
| | - Wenling Wang
- College of Information and Communication Engineering, Hainan University, Haikou 570228, China
| | - Siling Feng
- College of Information and Communication Engineering, Hainan University, Haikou 570228, China
| | - Siling Feng
- College of Information and Communication Engineering, Hainan University, Haikou 570228, China
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China
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14
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Ragab M, W. Al-Rabia M, Saeed Binyamin S, A. Aldarmahi A. Intelligent Firefly Algorithm Deep Transfer Learning Based COVID-19 Monitoring System. COMPUTERS, MATERIALS & CONTINUA 2023; 74:2889-2903. [DOI: 10.32604/cmc.2023.032192] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2024]
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15
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Abdulkhaleq MT, Rashid TA, Hassan BA, Alsadoon A, Bacanin N, Chhabra A, Vimal S. Fitness dependent optimizer with neural networks for COVID-19 patients. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE UPDATE 2022; 3:100090. [PMID: 36591535 PMCID: PMC9792427 DOI: 10.1016/j.cmpbup.2022.100090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 11/22/2022] [Accepted: 12/26/2022] [Indexed: 06/16/2023]
Abstract
The Coronavirus, known as COVID-19, which appeared in 2019 in China, has significantly affected the global health and become a huge burden on health institutions all over the world. These effects are continuing today. One strategy for limiting the virus's transmission is to have an early diagnosis of suspected cases and take appropriate measures before the disease spreads further. This work aims to diagnose and show the probability of getting infected by the disease according to textual clinical data. In this work, we used five machine learning techniques (GWO_MLP, GWO_CMLP, MGWO_MLP, FDO_MLP, FDO_CMLP) all of which aim to classify Covid-19 patients into two categories (Positive and Negative). Experiments showed promising results for all used models. The applied methods showed very similar performance, typically in terms of accuracy. However, in each tested dataset, FDO_MLP and FDO_CMLP produced the best results with 100% accuracy. The other models' results varied from one experiment to the other. It is concluded that the models on which the FDO algorithm was used as a learning algorithm had the possibility of obtaining higher accuracy. However, it is found that FDO has the longest runtime compared to the other algorithms. The link to the Covid 19 models is found here: https://github.com/Tarik4Rashid4/covid19models.
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Affiliation(s)
- Maryam T Abdulkhaleq
- Department of Computer Science and Engineering, University of Kurdistan Hewler, Erbil, KR, Iraq
| | - Tarik A Rashid
- Department of Computer Science and Engineering, University of Kurdistan Hewler, Erbil, KR, Iraq
| | - Bryar A Hassan
- Kurdistan Institution for Strategic Studies and Scientific Research, Sulaimani, KR, Iraq
- Department of Computer Networks, Technical College of Informatics, Sulaimani Polytechnic University, Sulaimani, KR, Iraq
| | - Abeer Alsadoon
- School of Computing and Mathematics, Charles Sturt University, Sydney, Australia
- Information Technology Department, Asia Pacific International College (APIC), Sydney, Australia
| | - Nebojsa Bacanin
- Singidunum University, Danijelova 32, 11000, Belgrade, Serbia
| | - Amit Chhabra
- Department of Computer Engineering and Technology, Guru Nanak Dev University, Amritsar, India
| | - S Vimal
- Data Analytics Lab Department of Artificial Intelligence and Data Science, Ramco Institute of Technology, North Venganallur Village, Rajapalayam - 626 117 Virudhunagar District Tamilnadu, India
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16
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Giner-Soriano M, Gomez-Lumbreras A, Vedia C, Ouchi D, Morros R. Risk of thrombotic events and other complications in anticoagulant users infected with SARS-CoV-2: an observational cohort study in primary health care in SIDIAP (Catalonia, Spain). BMC PRIMARY CARE 2022; 23:147. [PMID: 35676639 PMCID: PMC9174624 DOI: 10.1186/s12875-022-01752-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 05/26/2022] [Indexed: 09/02/2023]
Abstract
Abstract
Background
The risk of thromboembolic events and COVID-19 complications in anticoagulated patients once hospitalized has been widely analyzed. We aim to assess these outcomes in primary health care (PHC) patients chronically treated with oral anticoagulants (OAC) in comparison with non-treated.
Methods
Cohort study including adults with COVID-19 diagnosis in the PHC records in Catalonia, Spain; from March to June 2020. Patients were matched between exposed and non-exposed to OAC based on age and gender in a 1:2 design. Data source is the Information System for Research in Primary Care (SIDIAP).
Results
We included 311,542 individuals with COVID-19. After propensity score matching, we obtained a cohort of 20,360 people, 10,180 exposed and 10,180 non-exposed to OAC. Their mean age was 79.9 and 52.1% were women. Patients exposed to OAC had a higher frequency of comorbidities than non-exposed. Anticoagulated patients had a higher risk of hospital admission (IRR 1.16, 95% CI 1.03–1.29), and of stroke and pulmonary embolism than non-anticoagulated (IRR 1,80, 95% CI 1.06–3.06). The risk of pneumonia was not different between groups (IRR 1.04, 95% CI 0.84–1.30). We found a lower risk of death in patients exposed to OAC (IRR 0.60, 95% CI 0.55–0.65).
Conclusions
OAC users in our study had more comorbidities and were older than non-users, well known risks for hospitalization being confirmed with our results. We also found in our study that OAC exposure was not associated to an increased risk in the mortality rate, and it was associated with higher risks of hospital admission and thromboembolic events, although we cannot assess the effect of the interventions applied during hospital admission on the outcomes studied, as our database is a PHC database.
Trial registration
EUPAS register: EUPAS37205.
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Ouchi D, Vilaplana-Carnerero C, de Dios V, Giner-Soriano M, Morros R. Antidiabetic treatment and COVID-19 Outcomes: A population-based cohort study in primary health care in Catalonia during the first wave of the pandemic. Prim Care Diabetes 2022; 16:753-759. [PMID: 36216752 PMCID: PMC9531669 DOI: 10.1016/j.pcd.2022.10.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 09/06/2022] [Accepted: 10/02/2022] [Indexed: 11/05/2022]
Abstract
AIMS To analyse if antidiabetic treatment was associated with better COVID-19 outcomes in type 2 diabetic patients, measured by hospital admission and mortality rates as severe outcomes. METHODS Cohort study including COVID-19 patients registered in the Primary Care electronic records, in March-June 2020, comparing exposed to metformin in monotherapy with exposed to any other antidiabetic. DATA SOURCE SIDIAP (Information System for Research in Primary Care), which captures clinical information of 5,8 million people from Catalonia, Spain. RESULTS We included 31,006 diabetic patients infected with COVID-19, 43.7% previously exposed to metformin, 45.5% of them in monotherapy. 16.4% were admitted to hospital and 15.1% died. Users of insulin in monotherapy (OR 1.29, 95% CI 1.11-1.50), combined with metformin (OR 1.38, 1.13-1.69) or IDPP4 alone (OR 1.29, 1.03-1.63) had higher risk of severe outcomes than those in metformin monotherapy. Users of any insulin (OR 1.61, 1.32-1.97) or combined with metformin (OR 1.69, 1.30-2.20) had a higher risk of mortality. CONCLUSIONS Patients receiving metformin monotherapy in our study showed a lower risk of hospitalization and death in comparison to those treated with other frequent antidiabetic agents. We cannot distinguish if better outcomes are related with the antidiabetic therapy or with other factors, such as metabolic control or interventions applied during the hospital admission.
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Affiliation(s)
- Dan Ouchi
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain; Universitat Autònoma de Barcelona, Bellaterra, Cerdanyola del Vallès, Spain
| | - Carles Vilaplana-Carnerero
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain; Universitat Autònoma de Barcelona, Bellaterra, Cerdanyola del Vallès, Spain
| | - Vanessa de Dios
- Department of Clinical Pharmacology, Medicines Area, Hospital Clinic of Barcelona, Barcelona, Spain
| | - Maria Giner-Soriano
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain; Universitat Autònoma de Barcelona, Bellaterra, Cerdanyola del Vallès, Spain.
| | - Rosa Morros
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain; Departament de Farmacologia, Terapèutica i Toxicologia, Universitat Autònoma de Barcelona, Bellaterra, Cerdanyola del Vallès, Spain; Institut Català de la Salut, Barcelona, Spain; Plataforma SCReN, UICEC IDIAP Jordi Gol, Barcelona, Spain
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18
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Diagnosis of COVID-19 Disease in Chest CT-Scan Images Based on Combination of Low-Level Texture Analysis and MobileNetV2 Features. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:1658615. [PMID: 36507230 PMCID: PMC9729025 DOI: 10.1155/2022/1658615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 10/01/2022] [Accepted: 10/25/2022] [Indexed: 12/02/2022]
Abstract
Since two years ago, the COVID-19 virus has spread strongly in the world and has killed more than 6 million people directly and has affected the lives of more than 500 million people. Early diagnosis of the virus can help to break the chain of transmission and reduce the death rate. In most cases, the virus spreads in the infected person's chest. Therefore, the analysis of a chest CT scan is one of the most efficient methods for diagnosing a patient. Until now, various methods have been presented to diagnose COVID-19 disease in chest CT-scan images. Most recent studies have proposed deep learning-based methods. But handcrafted features provide acceptable results in some studies too. In this paper, an innovative approach is proposed based on the combination of low-level and deep features. First of all, local neighborhood difference patterns are performed to extract handcrafted texture features. Next, deep features are extracted using MobileNetV2. Finally, a two-level decision-making algorithm is performed to improve the detection rate especially when the proposed decisions based on the two different feature set are not the same. The proposed approach is evaluated on a collected dataset of chest CT scan images from June 1, 2021, to December 20, 2021, of 238 cases in two groups of patient and healthy in different COVID-19 variants. The results show that the combination of texture and deep features can provide better performance than using each feature set separately. Results demonstrate that the proposed approach provides higher accuracy in comparison with some state-of-the-art methods in this scope.
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Mazher M, Qayyum A, Puig D, Abdel-Nasser M. Effective Approaches to Fetal Brain Segmentation in MRI and Gestational Age Estimation by Utilizing a Multiview Deep Inception Residual Network and Radiomics. ENTROPY (BASEL, SWITZERLAND) 2022; 24:1708. [PMID: 36554113 PMCID: PMC9778347 DOI: 10.3390/e24121708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 11/16/2022] [Accepted: 11/18/2022] [Indexed: 06/17/2023]
Abstract
To completely comprehend neurodevelopment in healthy and congenitally abnormal fetuses, quantitative analysis of the human fetal brain is essential. This analysis requires the use of automatic multi-tissue fetal brain segmentation techniques. This paper proposes an end-to-end automatic yet effective method for a multi-tissue fetal brain segmentation model called IRMMNET. It includes a inception residual encoder block (EB) and a dense spatial attention (DSAM) block, which facilitate the extraction of multi-scale fetal-brain-tissue-relevant information from multi-view MRI images, enhance the feature reuse, and substantially reduce the number of parameters of the segmentation model. Additionally, we propose three methods for predicting gestational age (GA)-GA prediction by using a 3D autoencoder, GA prediction using radiomics features, and GA prediction using the IRMMNET segmentation model's encoder. Our experiments were performed on a dataset of 80 pathological and non-pathological magnetic resonance fetal brain volume reconstructions across a range of gestational ages (20 to 33 weeks) that were manually segmented into seven different tissue categories. The results showed that the proposed fetal brain segmentation model achieved a Dice score of 0.791±0.18, outperforming the state-of-the-art methods. The radiomics-based GA prediction methods achieved the best results (RMSE: 1.42). We also demonstrated the generalization capabilities of the proposed methods for tasks such as head and neck tumor segmentation and the prediction of patients' survival days.
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Affiliation(s)
- Moona Mazher
- Departament d’Enginyeria Informatica i Matemátiques, Universitat Rovira i Virgili, 43007 Tarragona, Spain
| | - Abdul Qayyum
- School of Biomedical Engineering and Imaging Sciences, Kings College London, London SE1 9RT, UK
| | - Domenec Puig
- Departament d’Enginyeria Informatica i Matemátiques, Universitat Rovira i Virgili, 43007 Tarragona, Spain
| | - Mohamed Abdel-Nasser
- Electronics and Communication Engineering Section, Electrical Engineering Department, Aswan University, Aswan 81528, Egypt
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20
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Giner-Soriano M, de Dios V, Ouchi D, Vilaplana-Carnerero C, Monteagudo M, Morros R. Outcomes of COVID-19 Infection in People Previously Vaccinated Against Influenza: Population-Based Cohort Study Using Primary Health Care Electronic Records. JMIR Public Health Surveill 2022; 8:e36712. [PMID: 36265160 PMCID: PMC9662290 DOI: 10.2196/36712] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 05/11/2022] [Accepted: 10/18/2022] [Indexed: 11/12/2022] Open
Abstract
BACKGROUND A possible link between influenza immunization and susceptibility to the complications of COVID-19 infection has been previously suggested owing to a boost in the immunity against SARS-CoV-2. OBJECTIVE This study aimed to investigate whether individuals with COVID-19 could have benefited from vaccination against influenza. We hypothesized that the immunity resulting from the previous influenza vaccination would boost part of the immunity against SARS-CoV-2. METHODS We performed a population-based cohort study including all patients with COVID-19 with registered entries in the primary health care (PHC) electronic records during the first wave of the COVID-19 pandemic (March 1 to June 30, 2020) in Catalonia, Spain. We compared individuals who took an influenza vaccine before being infected with COVID-19, with those who had not taken one. Data were obtained from Information System for Research in Primary Care, capturing PHC information of 5.8 million people from Catalonia. The main outcomes assessed during follow-up were a diagnosis of pneumonia, hospital admission, and mortality. RESULTS We included 309,039 individuals with COVID-19 and compared them on the basis of their influenza immunization status, with 114,181 (36.9%) having been vaccinated at least once and 194,858 (63.1%) having never been vaccinated. In total, 21,721 (19%) vaccinated individuals and 11,000 (5.7%) unvaccinated individuals had at least one of their outcomes assessed. Those vaccinated against influenza at any time (odds ratio [OR] 1.14, 95% CI 1.10-1.19), recently (OR 1.13, 95% CI 1.10-1.18), or recurrently (OR 1.10, 95% CI 1.05-1.15) before being infected with COVID-19 had a higher risk of presenting at least one of the outcomes than did unvaccinated individuals. When we excluded people living in long-term care facilities, the results were similar. CONCLUSIONS We could not establish a protective role of the immunity conferred by the influenza vaccine on the outcomes of COVID-19 infection, as the risk of COVID-19 complications was higher in vaccinated than in unvaccinated individuals. Our results correspond to the first wave of the COVID-19 pandemic, where more complications and mortalities due to COVID-19 had occurred. Despite that, our study adds more evidence for the analysis of a possible link between the quality of immunity and COVID-19 outcomes, particularly in the PHC setting.
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Affiliation(s)
- Maria Giner-Soriano
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain
- Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain
| | - Vanessa de Dios
- Department of Clinical Pharmacology, Medicines Area, Hospital Clinic of Barcelona, Barcelona, Spain
| | - Dan Ouchi
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain
- Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain
| | - Carles Vilaplana-Carnerero
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain
- Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain
| | - Mònica Monteagudo
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain
- Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain
| | - Rosa Morros
- Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain
- Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain
- Plataforma Spanish Clinical Research Network, Unidad de Investigación Clínica, Fundació Institut Universitari per a la Recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain
- Institut Català de la Salut, Barcelona, Spain
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21
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COVID-19 Data Analytics Using Extended Convolutional Technique. Interdiscip Perspect Infect Dis 2022; 2022:4578838. [DOI: 10.1155/2022/4578838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 10/25/2022] [Accepted: 10/27/2022] [Indexed: 11/09/2022] Open
Abstract
The healthcare system, lifestyle, industrial growth, economy, and livelihood of human beings worldwide were affected due to the triggered global pandemic by the COVID-19 virus that originated and was first reported in Wuhan city, Republic Country of China. COVID cases are difficult to predict and detect in their early stages, and their spread and mortality are uncontrollable. The reverse transcription polymerase chain reaction (RT-PCR) is still the first and foremost diagnostical methodology accepted worldwide; hence, it creates a scope of new diagnostic tools and techniques of detection approach which can produce effective and faster results compared with its predecessor. Innovational through current studies that complement the existence of the novel coronavirus (COVID-19) to findings in the thorax (chest) X-ray imaging, the projected research’s method makes use of present deep learning (DL) models with the integration of various frameworks such as GoogleNet, U-Net, and ResNet50 to novel method those X-ray images and categorize patients as the corona positive (COVID + ve) or the corona negative (COVID -ve). The anticipated technique entails the pretreatment phase through dissection of the lung, getting rid of the environment which does now no longer provide applicable facts and can provide influenced consequences; then after this, the preliminary degree comes up with the category version educated below the switch mastering system; and in conclusion, consequences are evaluated and interpreted through warmth maps visualization. The proposed research method completed a detection accuracy of COVID-19 at around 99%.
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22
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El-Dahshan ESA, Bassiouni MM, Hagag A, Chakrabortty RK, Loh H, Acharya UR. RESCOVIDTCNnet: A residual neural network-based framework for COVID-19 detection using TCN and EWT with chest X-ray images. EXPERT SYSTEMS WITH APPLICATIONS 2022; 204:117410. [PMID: 35502163 PMCID: PMC9045872 DOI: 10.1016/j.eswa.2022.117410] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Revised: 04/07/2022] [Accepted: 04/25/2022] [Indexed: 06/14/2023]
Abstract
Since the advent of COVID-19, the number of deaths has increased exponentially, boosting the requirement for various research studies that may correctly diagnose the illness at an early stage. Using chest X-rays, this study presents deep learning-based algorithms for classifying patients with COVID illness, healthy controls, and pneumonia classes. Data gathering, pre-processing, feature extraction, and classification are the four primary aspects of the approach. The pictures of chest X-rays utilized in this investigation came from various publicly available databases. The pictures were filtered to increase image quality in the pre-processing stage, and the chest X-ray images were de-noised using the empirical wavelet transform (EWT). Following that, four deep learning models were used to extract features. The first two models, Inception-V3 and Resnet-50, are based on transfer learning models. The Resnet-50 is combined with a temporal convolutional neural network (TCN) to create the third model. The fourth model is our suggested RESCOVIDTCNNet model, which integrates EWT, Resnet-50, and TCN. Finally, an artificial neural network (ANN) and a support vector machine were used to classify the data (SVM). Using five-fold cross-validation for 3-class classification, our suggested RESCOVIDTCNNet achieved a 99.5 percent accuracy. Our prototype can be utilized in developing nations where radiologists are in low supply to acquire a diagnosis quickly.
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Affiliation(s)
- El-Sayed A El-Dahshan
- Department of Physics, Faculty of Science, Ain Shams University, Postal Code: 11566, Cairo, Egypt
- Egyptian E-Learning University (EELU), 33 El-messah Street, Eldoki, Postal Code: 11261, El-Giza, Egypt
| | - Mahmoud M Bassiouni
- Egyptian E-Learning University (EELU), 33 El-messah Street, Eldoki, Postal Code: 11261, El-Giza, Egypt
| | - Ahmed Hagag
- Department of Scientific Computing, Faculty of Computers and Artificial Intelligence, Benha University, Benha 13518, Egypt
| | - Ripon K Chakrabortty
- School of Engineering and IT, UNSW Canberra at ADFA, Canberra, ACT 2612, Australia
| | - Huiwen Loh
- Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore
| | - U Rajendra Acharya
- Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, 599489, Singapore
- Department of Biomedical Informatics and Medical Engineering, Asia University, Taichung, Taiwan
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23
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Sinwar D, Dhaka VS, Tesfaye BA, Raghuwanshi G, Kumar A, Maakar SK, Agrawal S. Artificial Intelligence and Deep Learning Assisted Rapid Diagnosis of COVID-19 from Chest Radiographical Images: A Survey. CONTRAST MEDIA & MOLECULAR IMAGING 2022; 2022:1306664. [PMID: 36304775 PMCID: PMC9581633 DOI: 10.1155/2022/1306664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 09/06/2022] [Accepted: 09/27/2022] [Indexed: 01/26/2023]
Abstract
Artificial Intelligence (AI) has been applied successfully in many real-life domains for solving complex problems. With the invention of Machine Learning (ML) paradigms, it becomes convenient for researchers to predict the outcome based on past data. Nowadays, ML is acting as the biggest weapon against the COVID-19 pandemic by detecting symptomatic cases at an early stage and warning people about its futuristic effects. It is observed that COVID-19 has blown out globally so much in a short period because of the shortage of testing facilities and delays in test reports. To address this challenge, AI can be effectively applied to produce fast as well as cost-effective solutions. Plenty of researchers come up with AI-based solutions for preliminary diagnosis using chest CT Images, respiratory sound analysis, voice analysis of symptomatic persons with asymptomatic ones, and so forth. Some AI-based applications claim good accuracy in predicting the chances of being COVID-19-positive. Within a short period, plenty of research work is published regarding the identification of COVID-19. This paper has carefully examined and presented a comprehensive survey of more than 110 papers that came from various reputed sources, that is, Springer, IEEE, Elsevier, MDPI, arXiv, and medRxiv. Most of the papers selected for this survey presented candid work to detect and classify COVID-19, using deep-learning-based models from chest X-Rays and CT scan images. We hope that this survey covers most of the work and provides insights to the research community in proposing efficient as well as accurate solutions for fighting the pandemic.
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Affiliation(s)
- Deepak Sinwar
- Department of Computer and Communication Engineering, Manipal University Jaipur, Jaipur, India
| | - Vijaypal Singh Dhaka
- Department of Computer and Communication Engineering, Manipal University Jaipur, Jaipur, India
| | - Biniyam Alemu Tesfaye
- Department of Computer Science, College of Informatics, Bule Hora University, Bule Hora, Ethiopia
| | - Ghanshyam Raghuwanshi
- Department of Computer and Communication Engineering, Manipal University Jaipur, Jaipur, India
| | - Ashish Kumar
- Department of Mathematics and Statistics, Manipal University Jaipur, Jaipur, India
| | - Sunil Kr. Maakar
- School of Computing Science & Engineering, Galgotias University, Greater Noida, India
| | - Sanjay Agrawal
- Department of Electrical Engineering, Rajkiya Engineering College, Akbarpur, Ambedkar Nagar, India
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Automatic diagnosis of severity of COVID-19 patients using an ensemble of transfer learning models with convolutional neural networks in CT images. POLISH JOURNAL OF MEDICAL PHYSICS AND ENGINEERING 2022. [DOI: 10.2478/pjmpe-2022-0014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Abstract
Introduction: Quantification of lung involvement in COVID-19 using chest Computed tomography (CT) scan can help physicians to evaluate the progression of the disease or treatment response. This paper presents an automatic deep transfer learning ensemble based on pre-trained convolutional neural networks (CNNs) to determine the severity of COVID -19 as normal, mild, moderate, and severe based on the images of the lungs CT.
Material and methods: In this study, two different deep transfer learning strategies were used. In the first procedure, features were extracted from fifteen pre-trained CNNs architectures and then fed into a support vector machine (SVM) classifier. In the second procedure, the pre-trained CNNs were fine-tuned using the chest CT images, and then features were extracted for the purpose of classification by the softmax layer. Finally, an ensemble method was developed based on majority voting of the deep learning outputs to increase the performance of the recognition on each of the two strategies. A dataset of CT scans was collected and then labeled as normal (314), mild (262), moderate (72), and severe (35) for COVID-19 by the consensus of two highly qualified radiologists.
Results: The ensemble of five deep transfer learning outputs named EfficientNetB3, EfficientNetB4, InceptionV3, NasNetMobile, and ResNext50 in the second strategy has better results than the first strategy and also the individual deep transfer learning models in diagnosing the severity of COVID-19 with 85% accuracy.
Conclusions: Our proposed study is well suited for quantifying lung involvement of COVID-19 and can help physicians to monitor the progression of the disease.
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25
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Saeed A, Zaffar M, Abbas MA, Quraishi KS, Shahrose A, Irfan M, Huneif MA, Abdulwahab A, Alduraibi SK, Alshehri F, Alduraibi AK, Almushayti Z. A Turf-Based Feature Selection Technique for Predicting Factors Affecting Human Health during Pandemic. Life (Basel) 2022; 12:life12091367. [PMID: 36143404 PMCID: PMC9502730 DOI: 10.3390/life12091367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 08/22/2022] [Accepted: 08/24/2022] [Indexed: 11/30/2022] Open
Abstract
Worldwide, COVID-19 is a highly contagious epidemic that has affected various fields. Using Artificial Intelligence (AI) and particular feature selection approaches, this study evaluates the aspects affecting the health of students throughout the COVID-19 lockdown time. The research presented in this paper plays a vital role in indicating the factor affecting the health of students during the lockdown in the COVID-19 pandemic. The research presented in this article investigates COVID-19’s impact on student health using feature selections. The Filter feature selection technique is used in the presented work to statistically analyze all the features in the dataset, and for better accuracy. ReliefF (TuRF) filter feature selection is tuned and utilized in such a way that it helps to identify the factors affecting students’ health from a benchmark dataset of students studying during COVID-19. Random Forest (RF), Gradient Boosted Decision Trees (GBDT), Support Vector Machine (SVM), and 2- layer Neural Network (NN), helps in identifying the most critical indicators for rapid intervention. Results of the approach presented in the paper identified that the students who maintained their weight and kept themselves busy in health activities in the pandemic, such student’s remained healthy through this pandemic and study from home in a positive manner. The results suggest that the 2- layer NN machine-learning algorithm showed better accuracy (90%) to predict the factors affecting on health issues of students during COVID-19 lockdown time.
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Affiliation(s)
- Alqahtani Saeed
- Department of Surgery, Faculty of Medicine, Najran University, Najran 61441, Saudi Arabia
| | - Maryam Zaffar
- Faculty of Computer Sciences, IBADAT International University, Islamabad 44000, Pakistan
- Correspondence:
| | - Mohammed Ali Abbas
- Faculty of Computer Sciences, IBADAT International University, Islamabad 44000, Pakistan
| | - Khurrum Shehzad Quraishi
- Department of Chemical Engineering, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad 44000, Pakistan
| | - Abdullah Shahrose
- Department of Computer Science, HITEC University, Taxila 47080, Pakistan
| | - Muhammad Irfan
- Electrical Engineering Department, College of Engineering, Najran University Saudi Arabia, Najran 61441, Saudi Arabia
| | - Mohammed Ayed Huneif
- Department of Pediatrics, College of Medicine, Najran University, Najran 61441, Saudi Arabia
| | - Alqahtani Abdulwahab
- Department of Pediatrics, College of Medicine, Najran University, Najran 61441, Saudi Arabia
| | | | - Fahad Alshehri
- Department of Radiology, College of Medicine, Qassim University, Buraidah 52571, Saudi Arabia
| | - Alaa Khalid Alduraibi
- Department of Radiology, College of Medicine, Qassim University, Buraidah 52571, Saudi Arabia
| | - Ziyad Almushayti
- Department of Radiology, College of Medicine, Qassim University, Buraidah 52571, Saudi Arabia
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26
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A Novel Method for COVID-19 Detection Based on DCNNs and Hierarchical Structure. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:2484435. [PMID: 36092785 PMCID: PMC9453086 DOI: 10.1155/2022/2484435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 07/13/2022] [Accepted: 07/26/2022] [Indexed: 11/20/2022]
Abstract
The worldwide outbreak of the new coronavirus disease (COVID-19) has been declared a pandemic by the World Health Organization (WHO). It has a devastating impact on daily life, public health, and global economy. Due to the highly infectiousness, it is urgent to early screening of suspected cases quickly and accurately. Chest X-ray medical image, as a diagnostic basis for COVID-19, arouses attention from medical engineering. However, due to small lesion difference and lack of training data, the accuracy of detection model is insufficient. In this work, a transfer learning strategy is introduced to hierarchical structure to enhance high-level features of deep convolutional neural networks. The proposed framework consisting of asymmetric pretrained DCNNs with attention networks integrates various information into a wider architecture to learn more discriminative and complementary features. Furthermore, a novel cross-entropy loss function with a penalty term weakens misclassification. Extensive experiments are implemented on the COVID-19 dataset. Compared with the state-of-the-arts, the effectiveness and high performance of the proposed method are demonstrated.
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Bodapati JD, Rohith VN, Dondeti V. Ensemble of deep capsule neural networks: an application to pediatric pneumonia prediction. Phys Eng Sci Med 2022; 45:949-959. [PMID: 35997924 DOI: 10.1007/s13246-022-01169-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Accepted: 07/27/2022] [Indexed: 10/15/2022]
Abstract
Pneumonia disease accounts for 15% of all deaths in children under the age of five and early detection of the disease significantly improves survival chances. In this work, we introduce a novel deep neural network model for evaluating pediatric pneumonia from chest radio-graph images. The proposed network is an ensemble of multiple candidate networks, each with interleaved convolutional and capsule layers. Individual networks are stitched together with dense layers and trained as a single model to minimize joint loss. The proposed approach is validated through extensive experimentation on the benchmark pneumonia dataset, and the results demonstrate that the model captures higher level abstractions as well as hidden low-level features from the input radio-graphic images. Our comparison studies reveal that the proposed model produces more generic predictions than existing approaches, with an accuracy of 94.84%. The proposed model produces better scores than the existing models and is extremely useful in assisting clinicians in pneumonia diagnosis.
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Affiliation(s)
- Jyostna Devi Bodapati
- Department of Computer Science and Engineering, Vignan's Foundation for Science Technology and Research, Vadlamudi, Guntur, Andhra Pradesh, 522213, India.
| | - V N Rohith
- Department of Computer Science and Engineering, Vignan's Foundation for Science Technology and Research, Vadlamudi, Guntur, Andhra Pradesh, 522213, India
| | - Venkatesulu Dondeti
- Department of Computer Science and Engineering, Vignan's Foundation for Science Technology and Research, Vadlamudi, Guntur, Andhra Pradesh, 522213, India
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Fakieh B, Ragab M. Automated COVID-19 Classification Using Heap-Based Optimization with the Deep Transfer Learning Model. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:7508836. [PMID: 36045956 PMCID: PMC9423999 DOI: 10.1155/2022/7508836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 05/31/2022] [Accepted: 06/23/2022] [Indexed: 11/17/2022]
Abstract
The outbreak of the COVID-19 pandemic necessitates prompt identification of affected persons to restrict the spread of the COVID-19 epidemic. Radiological imaging such as computed tomography (CT) and chest X-rays (CXR) is considered an effective way to diagnose COVID-19. However, it needs an expert's knowledge and consumes more time. At the same time, artificial intelligence (AI) and medical images are discovered to be helpful in effectively assessing and providing treatment for COVID-19 infected patients. In particular, deep learning (DL) models act as a vital part of a high-performance classification model for COVID-19 recognition on CXR images. This study develops a heap-based optimization with the deep transfer learning model for detection and classification (HBODTL-DC) of COVID-19. The proposed HBODTL-DC system majorly focuses on the identification of COVID-19 on CXR images. To do so, the presented HBODTL-DC model initially exploits the Gabor filtering (GF) technique to enhance the image quality. In addition, the HBO algorithm with a neural architecture search network (NasNet) large model is employed for the extraction of feature vectors. Finally, Elman Neural Network (ENN) model gets the feature vectors as input and categorizes the CXR images into distinct classes. The experimental validation of the HBODTL-DC model takes place on the benchmark CXR image dataset from the Kaggle repository, and the outcomes are checked in numerous dimensions. The experimental outcomes stated the supremacy of the HBODTL-DC model over recent approaches with a maximum accuracy of 0.9992.
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Affiliation(s)
- Bahjat Fakieh
- Information Systems Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Mahmoud Ragab
- Information Technology Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
- Department of Mathematics, Faculty of Science, Al-Azhar University, Naser City 11884, Cairo, Egypt
- Centre for Artificial Intelligence in Precision Medicines, King Abdulaziz University, Jeddah 21589, Saudi Arabia
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Saffari A, Khishe M, Mohammadi M, Hussein Mohammed A, Rashidi S. DCNN-FuzzyWOA: Artificial Intelligence Solution for Automatic Detection of COVID-19 Using X-Ray Images. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:5677961. [PMID: 35965746 PMCID: PMC9363937 DOI: 10.1155/2022/5677961] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 06/01/2022] [Accepted: 06/14/2022] [Indexed: 11/18/2022]
Abstract
Artificial intelligence (AI) techniques have been considered effective technologies in diagnosing and breaking the transmission chain of COVID-19 disease. Recent research uses the deep convolution neural network (DCNN) as the discoverer or classifier of COVID-19 X-ray images. The most challenging part of neural networks is the subject of their training. Descent-based (GDB) algorithms have long been used to train fullymconnected layer (FCL) at DCNN. Despite the ability of GDBs to run and converge quickly in some applications, their disadvantage is the manual adjustment of many parameters. Therefore, it is not easy to parallelize them with graphics processing units (GPUs). Therefore, in this paper, the whale optimization algorithm (WOA) evolved by a fuzzy system called FuzzyWOA is proposed for DCNN training. With accurate and appropriate tuning of WOA's control parameters, the fuzzy system defines the boundary between the exploration and extraction phases in the search space. It causes the development and upgrade of WOA. To evaluate the performance and capability of the proposed DCNN-FuzzyWOA model, a publicly available database called COVID-Xray-5k is used. DCNN-PSO, DCNN-GA, and LeNet-5 benchmark models are used for fair comparisons. Comparative parameters include accuracy, processing time, standard deviation (STD), curves of ROC and precision-recall, and F1-Score. The results showed that the FuzzyWOA training algorithm with 20 epochs was able to achieve 100% accuracy, at a processing time of 880.44 s with an F1-Score equal to 100%. Structurally, the i-6c-2s-12c-2s model achieved better results than the i-8c-2s-16c-2s model. However, the results of using FuzzyWOA for both models have been very encouraging compared to particle swarm optimization, genetic algorithm, and LeNet-5 methods.
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Affiliation(s)
- Abbas Saffari
- Department of Electrical Engineering, Imam Khomeini Marine Science University, Nowshahr, Iran
| | - Mohammad Khishe
- Department of Electrical Engineering, Imam Khomeini Marine Science University, Nowshahr, Iran
| | - Mokhtar Mohammadi
- Department of Information Technology, College of Engineering and Computer Science, Lebanese French University, Erbil, Kurdistan Region, Iraq
| | - Adil Hussein Mohammed
- Department of Communication and Computer Engineering, Faculty of Engineering, Cihan University-Erbil, Erbil, Kurdistan Region, Iraq
| | - Shima Rashidi
- Department of Computer Science, College of Science and Technology, University of Human Development, Sulaymaniyah, Kurdistan Region, Iraq
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Akbar SB, Thanupillai K, Sundararaj S. Combining the advantages of AlexNet convolutional deep neural network optimized with anopheles search algorithm based feature extraction and random forest classifier for COVID-19 classification. CONCURRENCY AND COMPUTATION : PRACTICE & EXPERIENCE 2022; 34:e6958. [PMID: 35573661 PMCID: PMC9087014 DOI: 10.1002/cpe.6958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 02/24/2022] [Accepted: 02/26/2022] [Indexed: 06/15/2023]
Abstract
In this article, COVID-19 detection and classification framework based on anopheles search optimized AlexNet convolutional deep neural network for random forest classifier is implemented. Here, the COVID-19 dataset is taken from Joseph Paul Cohen database. Then, the input images are preprocessed with the help of fuzzy gray level difference histogram equalization technique (FGLHE) and fuzzy stacking technique for color enhancement and noise elimination in the input images. The FGLHE technique and fuzzy stacking technique are combined together and forms into stacked dataset image. This stacked dataset are trained with AlexNet convolutional deep neural network model and the feature packages acquired via the models are processed by the anopheles search algorithm. Subsequently, the efficient features are combined and delivered to random forest (RF) classifier. The proposed approach is implemented in MATLAB. The proposed ADCNN-ASA-RFC provides 91.66%, 69.13%, 34.86%, and 70.13% higher accuracy, 79.13%, 60.33%, and 63.34% higher specificity and 77.13%, 58.45%, 25.86%, and 55.33%, higher sensitivity compared with existing algorithms. At last, the simulation outcomes demonstrate that the proposed system can be able to find the optimal solutions efficiently and accurately with COVID-19 diagnosis.
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Affiliation(s)
- Sumaiya Begum Akbar
- Department of Electronics and Communication EngineeringR.M.D Engineering CollegeChennaiIndia
| | - Kalaiselvi Thanupillai
- Department of Electronics and Instrumentation EngineeringEaswari Engineering CollegeChennaiIndia
| | - Suganthi Sundararaj
- Department of Computer and communicationSri Sairam Institute of TechnologyChennaiIndia
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Rule Extraction for Screening of COVID-19 Disease Using Granular Computing Approach. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:8729749. [PMID: 35756426 PMCID: PMC9226976 DOI: 10.1155/2022/8729749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 05/11/2022] [Accepted: 06/04/2022] [Indexed: 01/08/2023]
Abstract
In the epidemic status of an unknown virus called Coronavirus, one of the main problems is inadequate access to treatment centers. Statistics show that many people are infected with the virus through unseasonable visits to medical centers immediately after noticing the initial symptoms similar to those reported for Coronavirus. Besides, unnecessary congestion at health centers reduces the quality of service to patients in urgent need of care. Since any external factor, including the virus, appears to have some symptoms after the onset of activity in the affected person, early diagnosis is possible. This paper presents an approach to classifying patients and diagnosing disease by symptoms, based on granular computing. One of the vital features of this method is the extraction of correct rules with zero entropy. This process is done based on a predefined classification of training datasets collected by experts. Granular computing has been a helpful approach in rule extraction and variety in recent years. Experimental results show that the proposed method can successfully detect COVID-19 disease according to its observed symptoms.
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Thurzo A, Jančovičová V, Hain M, Thurzo M, Novák B, Kosnáčová H, Lehotská V, Varga I, Kováč P, Moravanský N. Human Remains Identification Using Micro-CT, Chemometric and AI Methods in Forensic Experimental Reconstruction of Dental Patterns after Concentrated Sulphuric Acid Significant Impact. Molecules 2022; 27:molecules27134035. [PMID: 35807281 PMCID: PMC9268125 DOI: 10.3390/molecules27134035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 06/21/2022] [Accepted: 06/21/2022] [Indexed: 11/16/2022] Open
Abstract
(1) Teeth, in humans, represent the most resilient tissues. However, exposure to concentrated acids might lead to their dissolving, thus making human identification difficult. Teeth often contain dental restorations from materials that are even more resilient to acid impact. This paper aims to introduce a novel method for the 3D reconstruction of dental patterns as a crucial step for the digital identification of dental records. (2) With a combination of modern methods, including micro-computed tomography, cone-beam computer tomography, and attenuated total reflection, in conjunction with Fourier transform infrared spectroscopy and artificial intelligence convolutional neural network algorithms, this paper presents a method for 3D-dental-pattern reconstruction, and human remains identification. Our research studies the morphology of teeth, bone, and dental materials (amalgam, composite, glass-ionomer cement) under different periods of exposure to 75% sulfuric acid. (3) Our results reveal a significant volume loss in bone, enamel, dentine, as well as glass-ionomer cement. The results also reveal a significant resistance by the composite and amalgam dental materials to the impact of sulfuric acid, thus serving as strong parts in the dental-pattern mosaic. This paper also probably introduces the first successful artificial intelligence application in automated-forensic-CBCT segmentation. (4) Interdisciplinary cooperation, utilizing the mentioned technologies, can solve the problem of human remains identification with a 3D reconstruction of dental patterns and their 2D projections over existing ante-mortem records.
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Affiliation(s)
- Andrej Thurzo
- Department of Stomatology and Maxillofacial Surgery, Faculty of Medicine, Comenius University in Bratislava, 81250 Bratislava, Slovakia;
- Institute of Forensic Medical Expertise, Expert institute, Boženy Němcovej 8, 81104 Bratislava, Slovakia;
- Department of Simulation and Virtual Medical Education, Faculty of Medicine, Comenius University in Bratislava, Sasinkova 4, 81272 Bratislava, Slovakia;
- Correspondence: (A.T.); (N.M.)
| | - Viera Jančovičová
- Department of Graphic Arts Technology and Applied Photochemistry, Institute of Natural and Synthetic Polymers, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, 81237 Bratislava, Slovakia;
| | - Miroslav Hain
- Institute of Measurement Science, Slovak Academy of Sciences, Dúbravská Cesta 9, 84104 Bratislava, Slovakia;
| | - Milan Thurzo
- Department of Anthropology, Faculty of Natural Sciences, Comenius University in Bratislava, 84215 Bratislava, Slovakia;
| | - Bohuslav Novák
- Department of Stomatology and Maxillofacial Surgery, Faculty of Medicine, Comenius University in Bratislava, 81250 Bratislava, Slovakia;
| | - Helena Kosnáčová
- Department of Simulation and Virtual Medical Education, Faculty of Medicine, Comenius University in Bratislava, Sasinkova 4, 81272 Bratislava, Slovakia;
- Department of Genetics, Cancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, Dubravska Cesta 9, 84505 Bratislava, Slovakia
| | - Viera Lehotská
- 2nd Department of Radiology, Faculty of Medicine, Comenius University in Bratislava, Heydukova 10, 81250 Bratislava, Slovakia;
| | - Ivan Varga
- Institute of Histology and Embryology, Faculty of Medicine, Comenius University in Bratislava, 81372 Bratislava, Slovakia;
| | - Peter Kováč
- Institute of Forensic Medical Expertise, Expert institute, Boženy Němcovej 8, 81104 Bratislava, Slovakia;
| | - Norbert Moravanský
- Institute of Forensic Medical Expertise, Expert institute, Boženy Němcovej 8, 81104 Bratislava, Slovakia;
- Institute of Forensic Medicine, Faculty of Medicine Comenius University in Bratislava, Sasinkova 4, 81108 Bratislava, Slovakia
- Correspondence: (A.T.); (N.M.)
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Vineth Ligi S, Kundu SS, Kumar R, Narayanamoorthi R, Lai KW, Dhanalakshmi S. Radiological Analysis of COVID-19 Using Computational Intelligence: A Broad Gauge Study. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:5998042. [PMID: 35251572 PMCID: PMC8890832 DOI: 10.1155/2022/5998042] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 12/13/2021] [Accepted: 01/07/2022] [Indexed: 12/20/2022]
Abstract
Pulmonary medical image analysis using image processing and deep learning approaches has made remarkable achievements in the diagnosis, prognosis, and severity check of lung diseases. The epidemic of COVID-19 brought out by the novel coronavirus has triggered a critical need for artificial intelligence assistance in diagnosing and controlling the disease to reduce its effects on people and global economies. This study aimed at identifying the various COVID-19 medical imaging analysis models proposed by different researchers and featured their merits and demerits. It gives a detailed discussion on the existing COVID-19 detection methodologies (diagnosis, prognosis, and severity/risk detection) and the challenges encountered for the same. It also highlights the various preprocessing and post-processing methods involved to enhance the detection mechanism. This work also tries to bring out the different unexplored research areas that are available for medical image analysis and how the vast research done for COVID-19 can advance the field. Despite deep learning methods presenting high levels of efficiency, some limitations have been briefly described in the study. Hence, this review can help understand the utilization and pros and cons of deep learning in analyzing medical images.
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Affiliation(s)
- S. Vineth Ligi
- Department of Electronics and Communication Engineering, College of Engineering and Technology, Faculty of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, Chengalpattu, Chennai, TN, India
| | - Soumya Snigdha Kundu
- Department of Computer Science Engineering, College of Engineering and Technology, Faculty of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, Chengalpattu, Chennai, TN, India
| | - R. Kumar
- Department of Electronics and Communication Engineering, College of Engineering and Technology, Faculty of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, Chengalpattu, Chennai, TN, India
| | - R. Narayanamoorthi
- Department of Electrical and Electronics Engineering, College of Engineering and Technology, Faculty of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, Chengalpattu, Chennai, TN, India
| | - Khin Wee Lai
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Samiappan Dhanalakshmi
- Department of Electronics and Communication Engineering, College of Engineering and Technology, Faculty of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, Chengalpattu, Chennai, TN, India
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Qayyum A, Benzinou A, Mazher M, Meriaudeau F. Efficient Multi-model Vision Transformer Based on Feature Fusion for Classification of DFUC2021 Challenge. LECTURE NOTES IN COMPUTER SCIENCE 2022:62-75. [DOI: 10.1007/978-3-030-94907-5_5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2025]
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Data-Driven Analytics Leveraging Artificial Intelligence in the Era of COVID-19: An Insightful Review of Recent Developments. Symmetry (Basel) 2021. [DOI: 10.3390/sym14010016] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
This paper presents the role of artificial intelligence (AI) and other latest technologies that were employed to fight the recent pandemic (i.e., novel coronavirus disease-2019 (COVID-19)). These technologies assisted the early detection/diagnosis, trends analysis, intervention planning, healthcare burden forecasting, comorbidity analysis, and mitigation and control, to name a few. The key-enablers of these technologies was data that was obtained from heterogeneous sources (i.e., social networks (SN), internet of (medical) things (IoT/IoMT), cellular networks, transport usage, epidemiological investigations, and other digital/sensing platforms). To this end, we provide an insightful overview of the role of data-driven analytics leveraging AI in the era of COVID-19. Specifically, we discuss major services that AI can provide in the context of COVID-19 pandemic based on six grounds, (i) AI role in seven different epidemic containment strategies (a.k.a non-pharmaceutical interventions (NPIs)), (ii) AI role in data life cycle phases employed to control pandemic via digital solutions, (iii) AI role in performing analytics on heterogeneous types of data stemming from the COVID-19 pandemic, (iv) AI role in the healthcare sector in the context of COVID-19 pandemic, (v) general-purpose applications of AI in COVID-19 era, and (vi) AI role in drug design and repurposing (e.g., iteratively aligning protein spikes and applying three/four-fold symmetry to yield a low-resolution candidate template) against COVID-19. Further, we discuss the challenges involved in applying AI to the available data and privacy issues that can arise from personal data transitioning into cyberspace. We also provide a concise overview of other latest technologies that were increasingly applied to limit the spread of the ongoing pandemic. Finally, we discuss the avenues of future research in the respective area. This insightful review aims to highlight existing AI-based technological developments and future research dynamics in this area.
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Alkhammash EH, Algethami H, Alshahrani R. Novel Prediction Model for COVID-19 in Saudi Arabia Based on an LSTM Algorithm. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2021; 2021:6089677. [PMID: 34934420 PMCID: PMC8684576 DOI: 10.1155/2021/6089677] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Revised: 08/15/2021] [Accepted: 10/12/2021] [Indexed: 11/17/2022]
Abstract
The rapid emergence of the novel SARS-CoV-2 poses a challenge and has attracted worldwide attention. Artificial intelligence (AI) can be used to combat this pandemic and control the spread of the virus. In particular, deep learning-based time-series techniques are used to predict worldwide COVID-19 cases for short-term and medium-term dependencies using adaptive learning. This study aimed to predict daily COVID-19 cases and investigate the critical factors that increase the transmission rate of this outbreak by examining different influential factors. Furthermore, the study analyzed the effectiveness of COVID-19 prevention measures. A fully connected deep neural network, long short-term memory (LSTM), and transformer model were used as the AI models for the prediction of new COVID-19 cases. Initially, data preprocessing and feature extraction were performed using COVID-19 datasets from Saudi Arabia. The performance metrics for all models were computed, and the results were subjected to comparative analysis to detect the most reliable model. Additionally, statistical hypothesis analysis and correlation analysis were performed on the COVID-19 datasets by including features such as daily mobility, total cases, people fully vaccinated per hundred, weekly hospital admissions per million, intensive care unit patients, and new deaths per million. The results show that the LSTM algorithm had the highest accuracy of all the algorithms and an error of less than 2%. The findings of this study contribute to our understanding of COVID-19 containment. This study also provides insights into the prevention of future outbreaks.
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Affiliation(s)
- Eman H. Alkhammash
- Department of Computer Science, College of Computers and Information Technology, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Haneen Algethami
- Department of Computer Science, College of Computers and Information Technology, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Reem Alshahrani
- Department of Computer Science, College of Computers and Information Technology, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
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Thurzo A, Kurilová V, Varga I. Artificial Intelligence in Orthodontic Smart Application for Treatment Coaching and Its Impact on Clinical Performance of Patients Monitored with AI-TeleHealth System. Healthcare (Basel) 2021; 9:healthcare9121695. [PMID: 34946421 PMCID: PMC8701246 DOI: 10.3390/healthcare9121695] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Revised: 11/27/2021] [Accepted: 12/04/2021] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND Treatment of malocclusion with clear removable appliances like Invisalign® or Spark™, require considerable higher level of patient compliance when compared to conventional fixed braces. The clinical outcomes and treatment efficiency strongly depend on the patient's discipline. Smart treatment coaching applications, like strojCHECK® are efficient for improving patient compliance. PURPOSE To evaluate the impact of computerized personalized decision algorithms responding to observed and anticipated patient behavior implemented as an update of an existing clinical orthodontic application (app). MATERIALS AND METHODS Variables such as (1) patient app interaction, (2) patient app discipline and (3) clinical aligner tracking evaluated by artificial intelligence system (AI) system-Dental monitoring® were observed on the set of 86 patients. Two 60-day periods were evaluated; before and after the app was updated with decision tree processes. RESULTS All variables showed significant improvement after the update except for the manifestation of clinical non-tracking in men, evaluated by artificial intelligence from video scans. CONCLUSIONS Implementation of application update including computerized decision processes can significantly enhance clinical performance of existing health care applications and improve patients' compliance. Using the algorithm with decision tree architecture could create a baseline for further machine learning optimization.
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Affiliation(s)
- Andrej Thurzo
- Department of Stomatology and Maxillofacial Surgery, Faculty of Medicine, Comenius University in Bratislava, 81250 Bratislava, Slovakia
- Correspondence: ; Tel.: +421-903-110-107
| | - Veronika Kurilová
- Faculty of Electrical Engineering and Information Technology, Slovak University of Technology, 81219 Bratislava, Slovakia;
| | - Ivan Varga
- Institute of Histology and Embryology, Faculty of Medicine, Comenius University in Bratislava, 81372 Bratislava, Slovakia;
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Automated Diagnosis of Chest X-Ray for Early Detection of COVID-19 Disease. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2021; 2021:6919483. [PMID: 34721659 PMCID: PMC8553475 DOI: 10.1155/2021/6919483] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 09/14/2021] [Accepted: 10/04/2021] [Indexed: 12/11/2022]
Abstract
In March 2020, the World Health Organization announced the COVID-19 pandemic, its dangers, and its rapid spread throughout the world. In March 2021, the second wave of the pandemic began with a new strain of COVID-19, which was more dangerous for some countries, including India, recording 400,000 new cases daily and more than 4,000 deaths per day. This pandemic has overloaded the medical sector, especially radiology. Deep-learning techniques have been used to reduce the burden on hospitals and assist physicians for accurate diagnoses. In our study, two models of deep learning, ResNet-50 and AlexNet, were introduced to diagnose X-ray datasets collected from many sources. Each network diagnosed a multiclass (four classes) and a two-class dataset. The images were processed to remove noise, and a data augmentation technique was applied to the minority classes to create a balance between the classes. The features extracted by convolutional neural network (CNN) models were combined with traditional Gray-level Cooccurrence Matrix (GLCM) and Local Binary Pattern (LBP) algorithms in a 1-D vector of each image, which produced more representative features for each disease. Network parameters were tuned for optimum performance. The ResNet-50 network reached accuracy, sensitivity, specificity, and Area Under the Curve (AUC) of 95%, 94.5%, 98%, and 97.10%, respectively, with the multiclasses (COVID-19, viral pneumonia, lung opacity, and normal), while it reached accuracy, sensitivity, specificity, and AUC of 99%, 98%, 98%, and 97.51%, respectively, with the binary classes (COVID-19 and normal).
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Saygılı A. Computer-Aided Detection of COVID-19 from CT Images Based on Gaussian Mixture Model and Kernel Support Vector Machines Classifier. ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2021; 47:2435-2453. [PMID: 34642612 PMCID: PMC8494633 DOI: 10.1007/s13369-021-06240-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 09/20/2021] [Indexed: 12/11/2022]
Abstract
COVID-19 is a virus that has been declared an epidemic by the world health organization and causes more than 2 million deaths in the world. To achieve this, computer-aided automatic diagnosis systems are created on medical images. In this study, an image processing and machine learning-based method is proposed that enables segmenting of CT images taken from COVID-19 patients and automatic detection of the virus through the segmented images. The main purpose of the study is to automatically diagnose the COVID-19 virus. The study consists of three basic steps: preprocessing, segmentation and classification. Image resizing, image sharpening, noise removal, contrast stretching processes are included in the preprocessing phase and segmentation of images with Expectation–Maximization-based Gaussian Mixture Model in the segmentation phase. In the classification stage, COVID-19 is classified as positive and negative by using kNN, decision tree, and two different ensemble methods together with the kernel support vector machines method. In the study, two different CT datasets that are open to the public and a mixed dataset created by combining these datasets were used. The best accuracy values for Dataset-1, Dataset-2 and Mixed Dataset are 98.5%, 86.3%, 94.5%, respectively. The achieved results prove that the proposed approach advances state-of-the-art performance. Within the scope of the study, a GUI that can automatically detect COVID-19 has been created.
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Affiliation(s)
- Ahmet Saygılı
- Computer Engineering Department, Tekirdağ Namık Kemal University, Silahtarağa Mahallesi Üniversite 1.Sokak, No:13, 59860 Çorlu, Tekirdağ Turkey
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Umair M, Khan MS, Ahmed F, Baothman F, Alqahtani F, Alian M, Ahmad J. Detection of COVID-19 Using Transfer Learning and Grad-CAM Visualization on Indigenously Collected X-ray Dataset. SENSORS 2021; 21:s21175813. [PMID: 34502702 PMCID: PMC8434081 DOI: 10.3390/s21175813] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 08/11/2021] [Accepted: 08/16/2021] [Indexed: 12/13/2022]
Abstract
The COVID-19 outbreak began in December 2019 and has dreadfully affected our lives since then. More than three million lives have been engulfed by this newest member of the corona virus family. With the emergence of continuously mutating variants of this virus, it is still indispensable to successfully diagnose the virus at early stages. Although the primary technique for the diagnosis is the PCR test, the non-contact methods utilizing the chest radiographs and CT scans are always preferred. Artificial intelligence, in this regard, plays an essential role in the early and accurate detection of COVID-19 using pulmonary images. In this research, a transfer learning technique with fine tuning was utilized for the detection and classification of COVID-19. Four pre-trained models i.e., VGG16, DenseNet-121, ResNet-50, and MobileNet were used. The aforementioned deep neural networks were trained using the dataset (available on Kaggle) of 7232 (COVID-19 and normal) chest X-ray images. An indigenous dataset of 450 chest X-ray images of Pakistani patients was collected and used for testing and prediction purposes. Various important parameters, e.g., recall, specificity, F1-score, precision, loss graphs, and confusion matrices were calculated to validate the accuracy of the models. The achieved accuracies of VGG16, ResNet-50, DenseNet-121, and MobileNet are 83.27%, 92.48%, 96.49%, and 96.48%, respectively. In order to display feature maps that depict the decomposition process of an input image into various filters, a visualization of the intermediate activations is performed. Finally, the Grad-CAM technique was applied to create class-specific heatmap images in order to highlight the features extracted in the X-ray images. Various optimizers were used for error minimization purposes. DenseNet-121 outperformed the other three models in terms of both accuracy and prediction.
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Affiliation(s)
- Muhammad Umair
- Department of Electrical Engineering, HITEC University, Taxila 47080, Pakistan; (M.U.); (M.A.)
| | - Muhammad Shahbaz Khan
- Department of Electrical Engineering, HITEC University, Taxila 47080, Pakistan; (M.U.); (M.A.)
- Correspondence:
| | - Fawad Ahmed
- Department of Biomedical Engineering, HITEC University, Taxila 47080, Pakistan;
| | - Fatmah Baothman
- Faculty of Computing and Information Technology, King Abdul Aziz University, Jeddah 21431, Saudi Arabia;
| | - Fehaid Alqahtani
- Department of Computer Science, King Fahad Naval Academy, Al Jubail 35512, Saudi Arabia;
| | - Muhammad Alian
- Department of Electrical Engineering, HITEC University, Taxila 47080, Pakistan; (M.U.); (M.A.)
| | - Jawad Ahmad
- School of Computing, Edinburgh Napier University, Edinburgh EH10 5DT, UK;
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