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Debusho LK, Gemechu LL. Joint spatiotemporal modelling of tuberculosis and human immunodeficiency virus in Ethiopia using a Bayesian hierarchical approach. BMC Public Health 2025; 25:377. [PMID: 39885478 PMCID: PMC11780893 DOI: 10.1186/s12889-024-20996-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2024] [Accepted: 12/05/2024] [Indexed: 02/01/2025] Open
Abstract
BACKGROUND The aim of this paper was to evaluate the distribution of HIV and TB in Ethiopia during four years (2015-2018) at the district level, considering both spatial and temporal patterns. METHODS Consolidated data on the count of TB case notifications and the number of patients with HIV for four years, 2015-2018, were provided by the Ethiopian Federal Ministry of Health. The data was analyzed using the Bayesian hierarchical approach, employing joint spatiotemporal modelling. The integrated nested Laplace approximation available in the R-INLA package was used to fit six models, each with different priors, for the precision parameters of the random effects variances. The best-fitting model with the best predictive capacity was selected using the Deviance Information Criterion and the negative sum of cross-validatory predictive log-likelihood. RESULTS According to the findings of the selected model, about 53% of the variability in TB and HIV incidences in the study period was explained by the shared temporal component, disease-specific spatial effect of HIV, and space-time interaction effect. The shared temporal trend and disease-specific temporal trend of HIV risk showed a slight upward trend between 2015 and 2017, followed by a slight decrease in 2018. However, the disease-specific temporal trend of TB risk had almost constant trend with minimal variation over the study period. The distribution of the shared relative risks was similar to the distribution of disease-specific TB relative risk, whereas that of HIV had more districts as high-risk areas. CONCLUSIONS The study showed the spatial similarity in the distribution of HIV and TB case notifications in specific districts within various provinces. Moreover, the shared relative risks exhibit a temporal pattern and spatial distribution that closely resemble those of the relative risks specific to HIV illness. The existence of districts with shared relative risks implies the need for collaborative surveillance of HIV and TB, as well as integrated interventions to control the two diseases jointly.
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Affiliation(s)
- Legesse Kassa Debusho
- Department of Statistics, University of South Africa, c/o Christiaan de Wet Road & Pioneer Avenue, Private Bag X6, Florida, 1710, Johannesburg, South Africa.
| | - Leta Lencha Gemechu
- Department of Statistics, University of South Africa, c/o Christiaan de Wet Road & Pioneer Avenue, Private Bag X6, Florida, 1710, Johannesburg, South Africa
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Jones C, Keegan T, Knox A, Birtle A, Mendes JA, Heys K, Atkinson P, Sedda L. Syndemic geographic patterns of cancer risk in a health-deprived area of England. PUBLIC HEALTH IN PRACTICE 2024; 8:100552. [PMID: 39554619 PMCID: PMC11564078 DOI: 10.1016/j.puhip.2024.100552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 09/05/2024] [Accepted: 10/08/2024] [Indexed: 11/19/2024] Open
Abstract
Objectives This study aims to analyse the geographical co-occurrence of cancers and their individual and shared risk factors in a highly deprived area of the North West of England to aid the identification of potential interventions. Study design An ecological study design was employed and applied at postcode sector level in the Morecambe Bay region. Methods A novel spatial joint modelling framework designed to account for large frequencies of left-censored cancer data was employed. Nine cancer types (breast, colorectal, gynaecology, haematology, head and neck, lung, skin, upper gastrointestinal, urology) alongside demographic, behavioural factors and socio-economic variables were included in the model. Explanatory factors were selected by employing an accelerated failure model with lognormal distribution. Post-processing included principal components analysis and hierarchical clustering to delineate geographic areas with similar spatial risk patterns of different cancer types. Results 15,506 cancers were diagnosed from 2017 to 2022, with the highest incidence in skin, breast and urology cancers. Factors such as age, ethnicity, frailty and comorbidities were associated with cancer risk for most of the cancer types. A positive geographical association was found mostly between the colorectal, haematology, upper GI, urology and head and neck cancer types. That is, these cancers had their largest risk in the same areas, similarly to their lowest risk values. The spatial distribution of the risk and cumulative risk of the cancer types revealed regional variations, with five clusters identified based on cancer type risk, demographic and socio-economic characteristics. Rural areas were the least affected by cancer and the urban area of Barrow-in-Furness was the area with the highest cancer risk, three times greater than the risk in the surrounding rural areas. Conclusions This study emphasizes the utility of joint disease mapping by geographically identifying common or shared factors that, if targeted, could lead to reduced risk of multiple cancers simultaneously. The findings suggest the need for tailored public health interventions, considering specific risk factors and socio-economic disparities. Policymakers can utilize the spatial patterns identified to allocate resources effectively and implement targeted cancer prevention programmes.
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Affiliation(s)
- Catherine Jones
- University Hospitals of Morecambe Bay NHS Foundation Trust, Kendal, LA9 7RG, UK
| | - Thomas Keegan
- Lancaster Medical School, Lancaster University, Lancaster, LA1 4YG, UK
- Lancaster Ecology and Epidemiology Group (LEEG), Lancaster University, Lancaster, LA1 4YG, UK
| | - Andy Knox
- NHS Lancashire and South Cumbria Integrated Care Board, Preston, PR1 8XB, UK
| | - Alison Birtle
- University Hospitals of Morecambe Bay NHS Foundation Trust, Kendal, LA9 7RG, UK
- Rosemere Cancer Centre, Lancashire Teaching Hospitals, Preston, PR 29HT, UK
| | - Jessica A. Mendes
- Lancaster Ecology and Epidemiology Group (LEEG), Lancaster University, Lancaster, LA1 4YG, UK
- Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, OX3 7LG, UK
| | - Kelly Heys
- University Hospitals of Morecambe Bay NHS Foundation Trust, Kendal, LA9 7RG, UK
| | - Peter Atkinson
- Science and Technology, Lancaster University, Lancaster, LA1 4YG, UK
| | - Luigi Sedda
- Lancaster Ecology and Epidemiology Group (LEEG), Lancaster University, Lancaster, LA1 4YG, UK
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Hogg J, Cramb S, Cameron J, Baade P, Mengersen K. Creating area level indices of behaviours impacting cancer in Australia with a Bayesian generalised shared component model. Health Place 2024; 89:103295. [PMID: 38901136 DOI: 10.1016/j.healthplace.2024.103295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 05/10/2024] [Accepted: 06/11/2024] [Indexed: 06/22/2024]
Abstract
This study develops a model-based index approach called the Generalised Shared Component Model (GSCM) by drawing on the large field of factor models. The proposed fully Bayesian approach accommodates heteroscedastic model error, multiple shared factors and flexible spatial priors. Moreover, unlike previous index approaches, our model provides indices with uncertainty. Focusing on unhealthy behaviors that increase the risk of cancer, the proposed GSCM is used to develop the Area Indices of Behaviors Impacting Cancer product - representing the first area level cancer risk factor index in Australia. This advancement aids in identifying communities with elevated cancer risk, facilitating targeted health interventions.
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Affiliation(s)
- James Hogg
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, 4000, Queensland, Australia.
| | - Susanna Cramb
- Australian Centre for Health Services Innovation, School of Public Health and Social Work, Queensland University of Technology (QUT), 2 George St, Brisbane City, 4000, Queensland, Australia
| | - Jessica Cameron
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, 4000, Queensland, Australia; Viertel Cancer Research Centre, Cancer Council Queensland (CCQ), 553 Gregory Terrace, Fortitude Valley, 4006, Queensland, Australia
| | - Peter Baade
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, 4000, Queensland, Australia; Viertel Cancer Research Centre, Cancer Council Queensland (CCQ), 553 Gregory Terrace, Fortitude Valley, 4006, Queensland, Australia
| | - Kerrie Mengersen
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, 4000, Queensland, Australia
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Hogg J, Cameron J, Cramb S, Baade P, Mengersen K. Mapping the prevalence of cancer risk factors at the small area level in Australia. Int J Health Geogr 2023; 22:37. [PMID: 38115064 PMCID: PMC10729400 DOI: 10.1186/s12942-023-00352-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 11/01/2023] [Indexed: 12/21/2023] Open
Abstract
BACKGROUND Cancer is a significant health issue globally and it is well known that cancer risk varies geographically. However in many countries there are no small area-level data on cancer risk factors with high resolution and complete reach, which hinders the development of targeted prevention strategies. METHODS Using Australia as a case study, the 2017-2018 National Health Survey was used to generate prevalence estimates for 2221 small areas across Australia for eight cancer risk factor measures covering smoking, alcohol, physical activity, diet and weight. Utilising a recently developed Bayesian two-stage small area estimation methodology, the model incorporated survey-only covariates, spatial smoothing and hierarchical modelling techniques, along with a vast array of small area-level auxiliary data, including census, remoteness, and socioeconomic data. The models borrowed strength from previously published cancer risk estimates provided by the Social Health Atlases of Australia. Estimates were internally and externally validated. RESULTS We illustrated that in 2017-2018 health behaviours across Australia exhibited more spatial disparities than previously realised by improving the reach and resolution of formerly published cancer risk factors. The derived estimates revealed higher prevalence of unhealthy behaviours in more remote areas, and areas of lower socioeconomic status; a trend that aligned well with previous work. CONCLUSIONS Our study addresses the gaps in small area level cancer risk factor estimates in Australia. The new estimates provide improved spatial resolution and reach and will enable more targeted cancer prevention strategies at the small area level. Furthermore, by including the results in the next release of the Australian Cancer Atlas, which currently provides small area level estimates of cancer incidence and relative survival, this work will help to provide a more comprehensive picture of cancer in Australia by supporting policy makers, researchers, and the general public in understanding the spatial distribution of cancer risk factors. The methodology applied in this work is generalisable to other small area estimation applications and has been shown to perform well when the survey data are sparse.
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Affiliation(s)
- James Hogg
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, Queensland, 4000, Australia.
| | - Jessica Cameron
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, Queensland, 4000, Australia
- Viertel Cancer Research Centre, Cancer Council Queensland, 553 Gregory Terrace, Fortitude Valley, Queensland, 4006, Australia
| | - Susanna Cramb
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, Queensland, 4000, Australia
- Australian Centre for Health Services Innovation, School of Public Health and Social Work, Queensland University of Technology (QUT), 2 George St, Brisbane City, Queensland, 4000, Australia
| | - Peter Baade
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, Queensland, 4000, Australia
- Viertel Cancer Research Centre, Cancer Council Queensland, 553 Gregory Terrace, Fortitude Valley, Queensland, 4006, Australia
| | - Kerrie Mengersen
- Centre for Data Science, Queensland University of Technology (QUT), 2 George St, Brisbane City, Queensland, 4000, Australia
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Tesema GA, Tessema ZT, Heritier S, Stirling RG, Earnest A. A Systematic Review of Joint Spatial and Spatiotemporal Models in Health Research. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:5295. [PMID: 37047911 PMCID: PMC10094468 DOI: 10.3390/ijerph20075295] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 03/13/2023] [Accepted: 03/24/2023] [Indexed: 06/19/2023]
Abstract
With the advancement of spatial analysis approaches, methodological research addressing the technical and statistical issues related to joint spatial and spatiotemporal models has increased. Despite the benefits of spatial modelling of several interrelated outcomes simultaneously, there has been no published systematic review on this topic, specifically when such models would be useful. This systematic review therefore aimed at reviewing health research published using joint spatial and spatiotemporal models. A systematic search of published studies that applied joint spatial and spatiotemporal models was performed using six electronic databases without geographic restriction. A search with the developed search terms yielded 4077 studies, from which 43 studies were included for the systematic review, including 15 studies focused on infectious diseases and 11 on cancer. Most of the studies (81.40%) were performed based on the Bayesian framework. Different joint spatial and spatiotemporal models were applied based on the nature of the data, population size, the incidence of outcomes, and assumptions. This review found that when the outcome is rare or the population is small, joint spatial and spatiotemporal models provide better performance by borrowing strength from related health outcomes which have a higher prevalence. A framework for the design, analysis, and reporting of such studies is also needed.
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Affiliation(s)
- Getayeneh Antehunegn Tesema
- School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC 3004, Australia
- Department of Epidemiology and Biostatistics, Institute of Public Health, College of Medicine and Health Sciences, University of Gondar, Gondar 196, Ethiopia
| | - Zemenu Tadesse Tessema
- School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC 3004, Australia
- Department of Epidemiology and Biostatistics, Institute of Public Health, College of Medicine and Health Sciences, University of Gondar, Gondar 196, Ethiopia
| | - Stephane Heritier
- School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC 3004, Australia
| | - Rob G. Stirling
- Department of Respiratory Medicine, Alfred Health, Melbourne, VIC 3004, Australia
- Faculty of Medicine, Nursing and Health Sciences, Central Clinical School, Monash University, Melbourne, VIC 3004, Australia
| | - Arul Earnest
- School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC 3004, Australia
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Bentué-Martínez C, Mimbrero MR, Zúñiga-Antón M. Spatial patterns in sociodemographic factors explain to a large extent the prevalence of hypertension and diabetes in Aragon (Spain). Front Med (Lausanne) 2023; 10:1016157. [PMID: 36760398 PMCID: PMC9905822 DOI: 10.3389/fmed.2023.1016157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 01/11/2023] [Indexed: 01/26/2023] Open
Abstract
Introduction The global burden of multi-morbidity has become a major public health challenge due to the multi stakeholder action required to its prevention and control. The Social Determinants of Health approach is the basis for the establishment of health as a cross-cutting element of public policies toward enhanced and more efficient decision making for prevention and management. Objective To identify spatially varying relationships between the multi-morbidity of hypertension and diabetes and the sociodemographic settings (2015-2019) in Aragon (a mediterranean region of Northeastern Spain) from an ecological perspective. Materials and methods First, we compiled data on the prevalence of hypertension, diabetes, and sociodemographic variables to build a spatial geodatabase. Then, a Principal Component Analysis (PCA) was performed to derive regression variables, i.e., aggregating prevalence rates into a multi-morbidity component (stratified by sex) and sociodemographic covariate into a reduced but meaningful number of factors. Finally, we applied Geographically Weighted Regression (GWR) and cartographic design techniques to investigate the spatial variability of the relationships between multi-morbidity and sociodemographic variables. Results The GWR models revealed spatial explicit relationships with large heterogeneity. The sociodemographic environment participates in the explanation of the spatial behavior of multi-morbidity, reaching maximum local explained variance (R2) of 0.76 in men and 0.91 in women. The spatial gradient in the strength of the observed relationships was sharper in models addressing men's prevalence, while women's models attained more consistent and higher explanatory performance. Conclusion Modeling the prevalence of chronic diseases using GWR enables to identify specific areas in which the sociodemographic environment is explicitly manifested as a driving factor of multi-morbidity. This is step forward in supporting decision making as it highlights multi-scale contexts of vulnerability, hence allowing specific action suitable to the setting to be taken.
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Affiliation(s)
- Carmen Bentué-Martínez
- Department of Geography and Territorial Planning, University of Zaragoza, Zaragoza, Spain
| | - Marcos Rodrigues Mimbrero
- Department of Geography and Territorial Planning, University of Zaragoza, Zaragoza, Spain
- Institute of Research Into Environmental Sciences of the University of Zaragoza, Zaragoza, Spain
| | - María Zúñiga-Antón
- Department of Geography and Territorial Planning, University of Zaragoza, Zaragoza, Spain
- Institute of Research Into Environmental Sciences of the University of Zaragoza, Zaragoza, Spain
- Health Research Institute of Aragon, Zaragoza, Spain
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Aitken SC, Lalla-Edward ST, Kummerow M, Tenzer S, Harris BN, Venter WDF, Vos AG. A Retrospective Medical Record Review to Describe Health Status and Cardiovascular Disease Risk Factors of Bus Drivers in South Africa. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:15890. [PMID: 36497962 PMCID: PMC9738262 DOI: 10.3390/ijerph192315890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/24/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
Abstract
Cardiovascular disease (CVD) is the leading cause of death globally. The occupational challenges of bus drivers may increase their risk of CVD, including developing obesity, hypertension, and diabetes. We evaluated the medical records of 266 bus drivers visiting an occupational medical practice between 2007 and 2017 in Johannesburg, South Africa, to determine the health status of bus drivers and investigate risk factors for CVD, and their impact on the ability to work. The participants were in majority male (99.3%) with a median age of 41.2 years (IQR 35.2); 23.7% were smokers, and 27.1% consumed alcohol. The median body mass index (BMI) was 26.8 m/kg2 (IQR 7.1), with 63.1% of participants having above normal BMI. Smoking, BMI, and hypertension findings were in line with national South African data, but diabetes prevalence was far lower. Undiagnosed hypertension was found in 9.4% of participants, uncontrolled hypertension in 5.6%, and diabetes in 3.0%. Analysis by BMI category found that obesity was significantly associated with increased odds of hypertension. Uncontrolled hypertension was the main reason for being deemed 'unfit to work' (35.3%). Our research highlights the need for more regular screening for hypertension and interventions to address high BMI.
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Affiliation(s)
- Susan C. Aitken
- Genesis Analytics, Johannesburg 2196, South Africa
- School of Health Systems and Public Health, University of Pretoria, Pretoria 0002, South Africa
| | - Samanta T. Lalla-Edward
- Ezintsha, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2000, South Africa
| | - Maren Kummerow
- Julius Global Health, Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht University, 3584 CX Utrecht, The Netherlands
| | - Stan Tenzer
- Farraday Medical Centre, Johannesburg 2001, South Africa
| | - Bernice N. Harris
- School of Health Systems and Public Health, University of Pretoria, Pretoria 0002, South Africa
| | - W. D. Francois Venter
- Ezintsha, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2000, South Africa
| | - Alinda G. Vos
- Ezintsha, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2000, South Africa
- Julius Global Health, Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht University, 3584 CX Utrecht, The Netherlands
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Boake M, Mash R. Diabetes in the Western Cape, South Africa: A secondary analysis of the diabetes cascade database 2015 - 2020. Prim Care Diabetes 2022; 16:555-561. [PMID: 35672227 DOI: 10.1016/j.pcd.2022.05.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 05/27/2022] [Indexed: 10/18/2022]
Abstract
AIM The aim was to describe the demographics, comorbidities and outcomes of care for patients with diabetes at primary care facilities in the Western Cape, South Africa, between 2015 and 2020. METHODS This was a secondary analysis of the diabetes cascade database. RESULTS The database included 116726 patients with mean age of 61.4 years and 63.8 % were female. The mean age at death was 66.0 years. Co-morbidities included hypertension (69.5 %), mental health disorders (16.2 %), HIV (6.4 %) and previous TB (8.2 %). Sixty-three percent had at least one previous hospital admission and 20.2 % of all admissions were attributed to cardiovascular diseases. Coronavirus was the third highest reason for admission over a 10-year period. Up to 70% were not receiving an annual HbA1c test. The mean value for the last HBA1c taken was 9.0%. Three-quarters (75.5 %) of patients had poor glycaemic control (HbA1c >7 %) and a third (33.7 %) were very poorly controlled (HbA1c>10 %). Glycaemic control was significantly different between urban sub-districts and rural areas. Renal disease was prevalent in 25.5 %. CONCLUSION Diabetes was poorly controlled with high morbidity and mortality. There was poor compliance with guidelines for HbA1c and eGFR measurement. At least 7% of diabetic patients were being admitted for complications annually.
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Affiliation(s)
- Megan Boake
- Division of Family Medicine and Primary Care, Stellenbosch University, Box241, Cape Town 8000, South Africa
| | - Robert Mash
- Division of Family Medicine and Primary Care, Stellenbosch University, Box241, Cape Town 8000, South Africa.
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