Combining Physio-Biochemical Characterization and Transcriptome Analysis Reveal the Responses to Varying Degrees of Drought Stress in Brassica napus L

Reveal resistance mechanisms of Mirabilis jalapa L. when exposed to galaxolide and polystyrene microplastics stress, from individual, cellular and molecular level

As emerging contaminants, galaxolide (HHCB) and polystyrene microplastics (PSMP) are known to persist in the environment at low concentrations, posing significant ecological risks. While extensive research has focused on their ecotoxicological effects, limited attention has been given to plant tolerance mechanisms. This study investigates the tolerance and adaptive mechanisms of the ornamental plant Mirabilis jalapa L. (M. jalapa) to HHCB and PSMP exposure. Results demonstrated that M. jalapa exhibited robust tolerance to both pollutants, maintaining healthy growth in rhizomes and leaves, as evidenced by increased length and biomass. Exposure to PSMP and HHCB induced stomatal opening and enhanced transpiration, potentially mitigating pollutant toxicity. Both contaminants triggered oxidative stress, but M. jalapa activated defense mechanisms, as indicated by reduced malondialdehyde (MDA) levels and increased superoxide dismutase (SOD) activity, effectively regulating reactive oxygen species (ROS) and maintaining cellular homeostasis. Integrated metabolomic and transcriptomic analyses identified six co-annotated KEGG pathways, involving 11 key genes and 6 metabolites, revealing that M. jalapa employs adaptive energy metabolism and pollutant defense strategies to counteract HHCB and PSMP stress. These findings provide a theoretical foundation for utilizing M. jalapa in phytoremediation of HHCB and/or PSMP contamination.

Variability of plant transcriptomic responses under stress acclimation: a review from high throughput studies

Plant transcriptomes are complex entities shaped spatially and temporally by a multitude of stressors. The aim of this review was to summarize the most relevant transcriptomic responses to selected abiotic (UV radiation, chemical compounds, drought, suboptimal temperature) and biotic (bacteria, fungi, viruses, viroids) stress conditions in a variety of plant species, including model species, crops, and medicinal plants. Selected basic and applicative studies employing RNA-seq from various sequencing platforms and single-cell RNA-seq were involved. The transcriptomic responsiveness of various plant species and the diversity of affected gene families were discussed. Under stress acclimation, plant transcriptomes respond particularly dynamically. Stress response involved both distinct, but also similar gene families, depending on the species, tissue, and the quality and dosage of the stressor. We also noted the over-representation of transcriptomic data for some plant organs. Studies on plant transcriptomes allow for a better understanding of response strategies to environmental conditions. Functional analyses reveal the multitude of stress-affected genes as well as acclimatory mechanisms and suggest metabolome diversity, particularly among medicinal species. Extensive characterization of transcriptomic responses to stress would result in the development of new cultivars that would cope with stress more efficiently. These actions would include modern methodological tools, including advanced genetic engineering, as well as gene editing, especially for the expression of selected stress proteins in planta and for metabolic modifications that allow more efficient synthesis of secondary metabolites.

RING-type E3 ligase BnaJUL1 ubiquitinates and degrades BnaTBCC1 to regulate drought tolerance in Brassica napus L

Drought stress poses a persistent threat to field crops and significantly limits global agricultural productivity. Plants employ ubiquitin-dependent degradation as a crucial post-translational regulatory mechanism to swiftly adapt to changing environmental conditions. JUL1 is a RING-type E3 ligase related to drought stress in Arabidopsis. In this study, we explored the function of BnaJUL1 (a homologous gene of JUL1 in Brassica napus) and discovered a novel gene BnaTBCC1 participating in drought tolerance. First, we utilised BnaJUL1-cri materials through the clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein 9 system. Second, we confirmed that BnaJUL1 regulated drought tolerance through the drought tolerance assay and transcriptome analysis. Then, we identified a series of proteins interacting with BnaJUL1 through yeast library screening, including BnaTBCC1 (a tubulin binding cofactor C domain-containing protein); whose homologous gene TBCC1 knockdown mutants (tbcc1-1) exhibited ABA-sensitive germination in Arabidopsis, we then confirmed the involvement of BnaTBCC1 in drought tolerance in both Arabidopsis and Brassica. Finally, we established that BnaJUL1 could ubiquitinate and degrade BnaTBCC1 to regulate drought tolerance. Consequently, our study unveils BnaJUL1 as a novel regulator that ubiquitinates and degrades BnaTBCC1 to modulate drought tolerance and provided desirable germplasm for further breeding of drought tolerance in rapeseed.

Natural variation in BnaA9.NF-YA7 contributes to drought tolerance in Brassica napus L

Rapeseed (Brassica napus) is one of the important oil crops worldwide. Its production is often threatened by drought stress. Here, we identify a transcription factor (BnaA9.NF-YA7) that negatively regulates drought tolerance through genome-wide association study in B. napus. The presence of two SNPs within a CCAAT cis element leads to downregulation of BnaA9.NF-YA7 expression. In addition, the M63I (G-to-C) substitution in the transactivation domain can activate low level expression of BnaA4.DOR, which is an inhibitory factor of ABA-induced stomatal closure. Furthermore, we determine that Bna.ABF3/4s directly regulate the expression of BnaA9.NF-YA7, and BnaA9.NF-YA7 indirectly suppresses the expression of Bna.ABF3/4s by regulation of Bna.ASHH4s. Our findings uncover that BnaA9.NF-YA7 serves as a supplementary role for ABA signal balance under drought stress conditions, and provide a potential molecular target to breed drought-tolerant B. napus cultivars.

Functional genomics of Brassica napus: Progresses, challenges, and perspectives

Brassica napus, commonly known as rapeseed or canola, is a major oil crop contributing over 13% to the stable supply of edible vegetable oil worldwide. Identification and understanding the gene functions in the B. napus genome is crucial for genomic breeding. A group of genes controlling agronomic traits have been successfully cloned through functional genomics studies in B. napus. In this review, we present an overview of the progress made in the functional genomics of B. napus, including the availability of germplasm resources, omics databases and cloned functional genes. Based on the current progress, we also highlight the main challenges and perspectives in this field. The advances in the functional genomics of B. napus contribute to a better understanding of the genetic basis underlying the complex agronomic traits in B. napus and will expedite the breeding of high quality, high resistance and high yield in B. napus varieties.

Abiotic stress-induced secondary metabolite production in Brassica: opportunities and challenges

Over the decades, extensive research efforts have been undertaken to understand how secondary plant metabolites are affected by genetic, environmental, and agronomic factors. Understanding the genetic basis of stress-response metabolite biosynthesis is crucial for sustainable agriculture production amidst frequent occurrence of climatic anomalies. Although it is known that environmental factors influence phytochemical profiles and their content, studies of plant compounds in relation to stress mitigation are only emerging and largely hindered by phytochemical diversities and technical shortcomings in measurement techniques. Despite these challenges, considerable success has been achieved in profiling of secondary metabolites such as glucosinolates, flavonoids, carotenoids, phenolic acids and alkaloids. In this study, we aimed to understand the roles of glucosinolates, flavonoids, carotenoids, phenolic acids and alkaloids in relation to their abiotic stress response, with a focus on the developing of stress-resilient crops. The focal genus is the Brassica since it (i) possesses variety of specialized phytochemicals that are important for its plant defense against major abiotic stresses, and (ii) hosts many economically important crops that are sensitive to adverse growth conditions. We summarize that augmented levels of specialized metabolites in Brassica primarily function as stress mitigators against oxidative stress, which is a secondary stressor in many abiotic stresses. Furthermore, it is clear that functional characterization of stress-response metabolites or their genetic pathways describing biosynthesis is essential for developing stress-resilient Brassica crops.

Water Metabolism of Lonicera japonica and Parthenocissus quinquefolia in Response to Heterogeneous Simulated Rock Outcrop Habitats

The karst carbon sink caused by rock outcrops results in enrichment of the bicarbonate in soil, affecting the physiological process of plants in an all-round way. Water is the basis of plant growth and metabolic activities. In heterogeneous rock outcrop habitats, the impact of bicarbonate enrichment on the intracellular water metabolism of plant leaf is still unclear, which needs to be revealed. In this paper, the Lonicera japonica and Parthenocissus quinquefolia plants were selected as experimental materials, and electrophysiological indices were used to study their water holding, transfer and use efficiency under three simulated rock outcrop habitats, i.e., rock/soil ratio as 1, 1/4 and 0. By synchronously determining and analyzing the leaf water content, photosynthetic and chlorophyll fluorescence parameters, the response characteristics of water metabolism within leaf cells to the heterogeneous rock outcrop habitats were revealed. The results showed that the soil bicarbonate content in rock outcrop habitats increased with increasing rock/soil ratio. Under the treatment of a higher concentration of bicarbonate, the leaf intra- and intercellular water acquisition and transfer efficiency as well as the photosynthetic utilization capacity of P. quinquefolia decreased, the leaf water content was lower, and those plants had low bicarbonate utilization efficiency, which greatly weakened their drought resistance. However, the Lonicera japonica had a high bicarbonate use capacity when facing the enrichment of bicarbonate within cells, the above-mentioned capacity could significantly improve the water status of the leaves, and the water content and intracellular water-holding capacity of plant leaves in large rock outcrop habitats were significantly better than in non-rock outcrop habitats. In addition, the higher intracellular water-holding capacity was likely to maintain the stability of the intra- and intercellular water environment, thus ensuring the full development of its photosynthetic metabolic capacity, and the stable intracellular water-use efficiency also made itself more vigorous under karstic drought. Taken together, the results suggested that the water metabolic traits of Lonicera japonica made it more adaptable to karst environments.