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Antony A, Veerappapillai S, Karuppasamy R. In-silico bioprospecting of secondary metabolites from endophytic Streptomyces spp. against Magnaporthe oryzae, a cereal killer fungus. 3 Biotech 2024; 14:15. [PMID: 38125652 PMCID: PMC10728396 DOI: 10.1007/s13205-023-03859-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 11/18/2023] [Indexed: 12/23/2023] Open
Abstract
Rice blast disease, caused by Magnaporthe oryzae, is the most devastating cereal killer worldwide. Note that melanin pigment is an essential factor of M. oryzae virulence, thus fungicides interfering with melanin biosynthesizing enzymes would reduce the pathogenicity. Scytalone dehydratase (SDH) is the key target for commercial fungicides, like carpropamid, due to its role in the dehydration reaction of the fungal melanin pathway. However, a single-point mutation (V75M) in SDH elicits resistance to carpropamid. A lack of effective fungicides against this resistant strain expedited the quest for novel bioactive inhibitors. Currently, bacterial endophytes like Streptomyces have been heralded for synthesizing bioactive metabolites to protect plants from phytopathogens. The literature search led to the identification of 21 Streptomyces spp. symbionts of paddy that can suppress M. oryzae growth. An antiSMASH server was used to explore Streptomyces spp. gene clusters and found 4463 putative metabolites. Besides, 745 unique metabolites were subjected to a series of virtual screening techniques. Ideally, this process identified five potential SDH inhibitors. The docking result highlights that the metabolite pseudopyronine A interacted hydrophobically with both Val75 of SDHWT and Met75 of SDHV75M targets. Moreover, pseudopyronine A has a higher binding free energy with SDHWT (- 89.94 kcal/mol) and SDHV75M (- 71.95 kcal/mol). Interestingly, the pyranones scaffold of pseudopyronine A was reported for antifungal activity against phytopathogens. Dynamic behavior confirms that pseudopyronine A has excellent conformational states with both SDHWT and SDHV75M. Altogether, we hope that this study creates a new avenue for the discovery of novel phytopathogen inhibitors from endophytes. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-023-03859-7.
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Affiliation(s)
- Ajitha Antony
- Department of Biotechnology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu 632014 India
| | - Shanthi Veerappapillai
- Department of Biotechnology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu 632014 India
| | - Ramanathan Karuppasamy
- Department of Biotechnology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu 632014 India
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Yoon J, Kim Y, Kim S, Jeong H, Park J, Jeong MH, Park S, Jo M, An S, Park J, Jang SH, Goh J, Park SY. Agrobacterium tumefaciens-Mediated Transformation of the Aquatic Fungus Phialemonium inflatum FBCC-F1546. J Fungi (Basel) 2023; 9:1158. [PMID: 38132759 PMCID: PMC10744869 DOI: 10.3390/jof9121158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 11/23/2023] [Accepted: 11/29/2023] [Indexed: 12/23/2023] Open
Abstract
Phialemonium inflatum is a useful fungus known for its ability to mineralise lignin during primary metabolism and decompose polycyclic aromatic hydrocarbons (PAHs). However, no functional genetic analysis techniques have been developed yet for this fungus, specifically in terms of transformation. In this study, we applied an Agrobacterium tumefaciens-mediated transformation (ATMT) system to P. inflatum for a functional gene analysis. We generated 3689 transformants using the binary vector pSK1044, which carried either the hygromycin B phosphotransferase (hph) gene or the enhanced green fluorescent protein (eGFP) gene to label the transformants. A Southern blot analysis showed that the probability of a single copy of T-DNA insertion was approximately 50% when the co-cultivation of fungal spores and Agrobacterium tumefaciens cells was performed at 24-36 h, whereas at 48 h, it was approximately 35.5%. Therefore, when performing gene knockout using the ATMT system, the co-cultivation time was reduced to ≤36 h. The resulting transformants were mitotically stable, and a PCR analysis confirmed the genes' integration into the transformant genome. Additionally, hph and eGFP gene expressions were confirmed via PCR amplification and fluorescence microscopy. This optimised transformation system will enable functional gene analyses to study genes of interest in P. inflatum.
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Affiliation(s)
- Jonghan Yoon
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
| | - Youngjun Kim
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
| | - Seoyeon Kim
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
- Interdisciplinary Program in IT-Bio Convergence System (BK21 Plus), Sunchon National University, Suncheon 57922, Republic of Korea
| | - Haejun Jeong
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
| | - Jiyoon Park
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
- Interdisciplinary Program in IT-Bio Convergence System (BK21 Plus), Sunchon National University, Suncheon 57922, Republic of Korea
| | - Min-Hye Jeong
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
| | - Sangkyu Park
- Fungi Research Team, Microbial Research Department, Nakdonggang National Institute of Biological Resources, Donam 2-gil 137, Sangju 37242, Republic of Korea;
| | - Miju Jo
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
- Interdisciplinary Program in IT-Bio Convergence System (BK21 Plus), Sunchon National University, Suncheon 57922, Republic of Korea
| | - Sunmin An
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
- Interdisciplinary Program in IT-Bio Convergence System (BK21 Plus), Sunchon National University, Suncheon 57922, Republic of Korea
| | - Jiwon Park
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
- Interdisciplinary Program in IT-Bio Convergence System (BK21 Plus), Sunchon National University, Suncheon 57922, Republic of Korea
| | - Seol-Hwa Jang
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
| | - Jaeduk Goh
- Fungi Research Team, Microbial Research Department, Nakdonggang National Institute of Biological Resources, Donam 2-gil 137, Sangju 37242, Republic of Korea;
| | - Sook-Young Park
- Department of Plant Medicine, Sunchon National University, Suncheon 57922, Republic of Korea; (J.Y.); (Y.K.); (S.K.); (H.J.); (J.P.); (M.-H.J.); (M.J.); (S.A.); (J.P.); (S.-H.J.)
- Interdisciplinary Program in IT-Bio Convergence System (BK21 Plus), Sunchon National University, Suncheon 57922, Republic of Korea
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