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Yannakula VK, Alluri AA, Samuel D, Popoola SA, Barake BA, Alabbasi A, Ahmed AS, Cortes Bandy DA, Jesi NJ. The Role of Artificial Intelligence in Providing Real-Time Guidance During Interventional Cardiology Procedures: A Narrative Review. Cureus 2025; 17:e83464. [PMID: 40322608 PMCID: PMC12050095 DOI: 10.7759/cureus.83464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/04/2025] [Indexed: 05/08/2025] Open
Abstract
Integrating artificial intelligence (AI) in interventional cardiology revolutionizes procedural guidance, particularly in high-stakes environments such as angioplasty and stent placement. In this narrative review we explore the role of AI in providing real-time decision support, enhancing precision, and improving patient outcomes during these complex procedures. AI algorithms can identify critical anatomical features, predict complications, and optimize stent positioning with unprecedented accuracy by analyzing data from imaging modalities like intravascular ultrasound and optical coherence tomography. The findings of this narrative review, from which we have reviewed more than 150 studies across multiple databases, highlight the necessity of continued research and development to utilize AI to its full potential in enhancing the efficacy and safety of interventional procedures. In this review we highlight AI's current advancements, challenges, and potential in real-time interventional cardiology procedures, emphasizing its transformative impact on clinical practice and patient care.
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Affiliation(s)
| | - Amruth A Alluri
- Internal Medicine, American University of the Caribbean School of Medicine, Cupecoy, SXM
| | - Dany Samuel
- Radiology, Medical University of Varna, Varna, BGR
| | | | - Bashir A Barake
- Gilbert and Rose-Marie Chagoury School of Medicine, Lebanese American University School of Medicine, Byblos, LBN
| | | | | | | | - Nusrat J Jesi
- Internal Medicine, Shaheed Syed Nazrul Islam Medical College, Kishoreganj, BGD
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Scuricini A, Ramoni D, Liberale L, Montecucco F, Carbone F. The role of artificial intelligence in cardiovascular research: Fear less and live bolder. Eur J Clin Invest 2025; 55 Suppl 1:e14364. [PMID: 40191936 PMCID: PMC11973843 DOI: 10.1111/eci.14364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Accepted: 10/30/2024] [Indexed: 04/09/2025]
Abstract
BACKGROUND Artificial intelligence (AI) has captured the attention of everyone, including cardiovascular (CV) clinicians and scientists. Moving beyond philosophical debates, modern cardiology cannot overlook AI's growing influence but must actively explore its potential applications in clinical practice and research methodology. METHODS AND RESULTS AI offers exciting possibilities for advancing CV medicine by uncovering disease heterogeneity, integrating complex multimodal data, and enhancing treatment strategies. In this review, we discuss the innovative applications of AI in cardiac electrophysiology, imaging, angiography, biomarkers, and genomic data, as well as emerging tools like face recognition and speech analysis. Furthermore, we focus on the expanding role of machine learning (ML) in predicting CV risk and outcomes, outlining a roadmap for the implementation of AI in CV care delivery. While the future of AI holds great promise, technical limitations and ethical challenges remain significant barriers to its widespread clinical adoption. CONCLUSIONS Addressing these issues through the development of high-quality standards and involving key stakeholders will be essential for AI to transform cardiovascular care safely and effectively.
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Affiliation(s)
| | - Davide Ramoni
- Department of Internal MedicineUniversity of GenoaGenoaItaly
| | - Luca Liberale
- Department of Internal MedicineUniversity of GenoaGenoaItaly
- IRCCS Ospedale Policlinico San Martino, Genoa – Italian Cardiovascular NetworkGenoaItaly
| | - Fabrizio Montecucco
- Department of Internal MedicineUniversity of GenoaGenoaItaly
- IRCCS Ospedale Policlinico San Martino, Genoa – Italian Cardiovascular NetworkGenoaItaly
| | - Federico Carbone
- Department of Internal MedicineUniversity of GenoaGenoaItaly
- IRCCS Ospedale Policlinico San Martino, Genoa – Italian Cardiovascular NetworkGenoaItaly
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3
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Chen S, Wu C, Zhang Z, Liu L, Zhu Y, Hu D, Jin C, Fu H, Wu J, Liu S. The role of artificial intelligence in aortic valve stenosis: a bibliometric analysis. Front Cardiovasc Med 2025; 12:1521464. [PMID: 40013126 PMCID: PMC11860872 DOI: 10.3389/fcvm.2025.1521464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2024] [Accepted: 01/27/2025] [Indexed: 02/28/2025] Open
Abstract
Purpose To explore the expanding role of artificial intelligence (AI) in managing aortic valve stenosis (AVS) by bibliometric analysis to identify research trends, key contributors, and the impact of AI on enhancing diagnostic and therapeutic strategies for AVS. Methods A comprehensive literature review was conducted using the Web of Science database, covering publications from January 1990 to March 2024. Articles were analyzed with bibliometric tools such as CiteSpace and VOSviewer to identify key research trends, core authors, institutions, and research hotspots in AI applications for AVS. Results A total of 118 articles were analyzed, showing a significant increase in publications from 2014 onwards. The results highlight the growing impact of AI in AVS, particularly in cardiac imaging and predictive modeling. Core authors and institutions, primarily from the U.S. and Germany, are driving research in this field. Key research hotspots include machine learning applications in diagnostics and personalized treatment strategies. Conclusions AI is playing a transformative role in the diagnosis and treatment of AVS, improving accuracy and personalizing therapeutic approaches. Despite the progress, challenges such as model transparency and data security remain. Future research should focus on overcoming these challenges while enhancing collaboration among international institutions to further advance AI applications in cardiovascular medicine.
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Affiliation(s)
- Shanshan Chen
- Department of Respiratory and Critical Care Medicine, Second Affiliated Hospital of Xuzhou Medical University, Xuzhou Mining Group General Hospital, Xuzhou, Jiangsu, China
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Changde Wu
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Zhaojie Zhang
- Department of Critical Care Medicine, Trauma Center, Nanjing Lishui People’s Hospital, Zhongda Hospital Lishui Branch, Nanjing, Jiangsu, China
| | - Lingjuan Liu
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Yike Zhu
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Dingji Hu
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Chenhui Jin
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Haoya Fu
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Jing Wu
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
| | - Songqiao Liu
- Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, Trauma Center, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu, China
- Department of Critical Care Medicine, Trauma Center, Nanjing Lishui People’s Hospital, Zhongda Hospital Lishui Branch, Nanjing, Jiangsu, China
- The First People’s Hospital of Lianyungang, The Lianyungang Clinical College of Nanjing Medical University, The First Affiliated Hospital of Kangda College of Nanjing Medical University, The Affiliated Lianyungang Hospital of Xuzhou Medical University, Lianyungang, Jiangsu, China
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Jaltotage B, Lu J, Dwivedi G. Use of Artificial Intelligence Including Multimodal Systems to Improve the Management of Cardiovascular Disease. Can J Cardiol 2024; 40:1804-1812. [PMID: 39038650 DOI: 10.1016/j.cjca.2024.07.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Revised: 07/15/2024] [Accepted: 07/16/2024] [Indexed: 07/24/2024] Open
Abstract
The rising prevalence of cardiovascular disease presents an escalating challenge for current health services, which are grappling with increasing demands. Innovative changes are imperative to sustain the delivery of high-quality patient care. Recent technologic advances have resulted in the emergence of artificial intelligence as a viable solution. Advanced algorithms are now capable of performing complex analysis of large volumes of data rapidly and with exceptional accuracy. Multimodality artificial intelligence systems handle a diverse range of data including images, text, video, and audio. Compared with single-modality systems, multimodal artificial intelligence systems appear to hold promise for enhancing overall performance and enabling smoother integration into existing workflows. Such systems can empower physicians with clinical decision support and enhanced efficiency. Owing to the complexity of the field, however, truly multimodal artificial intelligence is still scarce in the management of cardiovascular disease. This article aims to cover current research, emerging trends, and the future utilisation of artificial intelligence in the management of cardiovascular disease, with a focus on multimodality systems.
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Affiliation(s)
- Biyanka Jaltotage
- Department of Cardiology, Fiona Stanley Hospital, Perth, Western Australia, Australia
| | - Juan Lu
- Harry Perkins Institute of Medical Research, Perth, Western Australia, Australia; School of Medicine, University of Western Australia, Perth, Western Australia, Australia
| | - Girish Dwivedi
- Department of Cardiology, Fiona Stanley Hospital, Perth, Western Australia, Australia; Harry Perkins Institute of Medical Research, Perth, Western Australia, Australia; School of Medicine, University of Western Australia, Perth, Western Australia, Australia.
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Sulague RM, Beloy FJ, Medina JR, Mortalla ED, Cartojano TD, Macapagal S, Kpodonu J. Artificial intelligence in cardiac surgery: A systematic review. World J Surg 2024; 48:2073-2089. [PMID: 39019775 DOI: 10.1002/wjs.12265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 06/14/2024] [Indexed: 07/19/2024]
Abstract
BACKGROUND Artificial intelligence (AI) has emerged as a tool to potentially increase the efficiency and efficacy of cardiovascular care and improve clinical outcomes. This study aims to provide an overview of applications of AI in cardiac surgery. METHODS A systematic literature search on AI applications in cardiac surgery from inception to February 2024 was conducted. Articles were then filtered based on the inclusion and exclusion criteria and the risk of bias was assessed. Key findings were then summarized. RESULTS A total of 81 studies were found that reported on AI applications in cardiac surgery. There is a rapid rise in studies since 2020. The most popular machine learning technique was random forest (n = 48), followed by support vector machine (n = 33), logistic regression (n = 32), and eXtreme Gradient Boosting (n = 31). Most of the studies were on adult patients, conducted in China, and involved procedures such as valvular surgery (24.7%), heart transplant (9.4%), coronary revascularization (11.8%), congenital heart disease surgery (3.5%), and aortic dissection repair (2.4%). Regarding evaluation outcomes, 35 studies examined the performance, 26 studies examined clinician outcomes, and 20 studies examined patient outcomes. CONCLUSION AI was mainly used to predict complications following cardiac surgeries and improve clinicians' decision-making by providing better preoperative risk assessment, stratification, and prognostication. While the application of AI in cardiac surgery has greatly progressed in the last decade, further studies need to be conducted to verify accuracy and ensure safety before use in clinical practice.
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Affiliation(s)
- Ralf Martz Sulague
- Graduate School of Arts and Sciences, Georgetown University, Washington, District of Columbia, USA
- Smidt Heart Institute, Cedars-Sinai Medical Center, Los Angeles, California, USA
| | | | | | | | | | | | - Jacques Kpodonu
- Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
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Thirunavukarasu AJ, Elangovan K, Gutierrez L, Hassan R, Li Y, Tan TF, Cheng H, Teo ZL, Lim G, Ting DSW. Clinical performance of automated machine learning: A systematic review. ANNALS OF THE ACADEMY OF MEDICINE, SINGAPORE 2024; 53:187-207. [PMID: 38920245 DOI: 10.47102/annals-acadmedsg.2023113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
Introduction Automated machine learning (autoML) removes technical and technological barriers to building artificial intelligence models. We aimed to summarise the clinical applications of autoML, assess the capabilities of utilised platforms, evaluate the quality of the evidence trialling autoML, and gauge the performance of autoML platforms relative to conventionally developed models, as well as each other. Method This review adhered to a prospectively registered protocol (PROSPERO identifier CRD42022344427). The Cochrane Library, Embase, MEDLINE and Scopus were searched from inception to 11 July 2022. Two researchers screened abstracts and full texts, extracted data and conducted quality assessment. Disagreement was resolved through discussion and if required, arbitration by a third researcher. Results There were 26 distinct autoML platforms featured in 82 studies. Brain and lung disease were the most common fields of study of 22 specialties. AutoML exhibited variable performance: area under the receiver operator characteristic curve (AUCROC) 0.35-1.00, F1-score 0.16-0.99, area under the precision-recall curve (AUPRC) 0.51-1.00. AutoML exhibited the highest AUCROC in 75.6% trials; the highest F1-score in 42.3% trials; and the highest AUPRC in 83.3% trials. In autoML platform comparisons, AutoPrognosis and Amazon Rekognition performed strongest with unstructured and structured data, respectively. Quality of reporting was poor, with a median DECIDE-AI score of 14 of 27. Conclusion A myriad of autoML platforms have been applied in a variety of clinical contexts. The performance of autoML compares well to bespoke computational and clinical benchmarks. Further work is required to improve the quality of validation studies. AutoML may facilitate a transition to data-centric development, and integration with large language models may enable AI to build itself to fulfil user-defined goals.
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Affiliation(s)
- Arun James Thirunavukarasu
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
- University of Cambridge School of Clinical Medicine, University of Cambridge, Cambridge, United Kingdom
| | - Kabilan Elangovan
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
| | - Laura Gutierrez
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
| | - Refaat Hassan
- University of Cambridge School of Clinical Medicine, University of Cambridge, Cambridge, United Kingdom
| | - Yong Li
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
- Duke-NUS Medical School, National University of Singapore, Singapore
| | - Ting Fang Tan
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
| | - Haoran Cheng
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
- Duke-NUS Medical School, National University of Singapore, Singapore
- Rollins School of Public Health, Emory University, Atlanta, Georgia, USA
| | | | - Gilbert Lim
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
| | - Daniel Shu Wei Ting
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research Institute, Singapore
- Duke-NUS Medical School, National University of Singapore, Singapore
- Singapore National Eye Centre, Singapore
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Benjamin MM, Rabbat MG. Artificial Intelligence in Transcatheter Aortic Valve Replacement: Its Current Role and Ongoing Challenges. Diagnostics (Basel) 2024; 14:261. [PMID: 38337777 PMCID: PMC10855497 DOI: 10.3390/diagnostics14030261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 01/18/2024] [Accepted: 01/20/2024] [Indexed: 02/12/2024] Open
Abstract
Transcatheter aortic valve replacement (TAVR) has emerged as a viable alternative to surgical aortic valve replacement, as accumulating clinical evidence has demonstrated its safety and efficacy. TAVR indications have expanded beyond high-risk or inoperable patients to include intermediate and low-risk patients with severe aortic stenosis. Artificial intelligence (AI) is revolutionizing the field of cardiology, aiding in the interpretation of medical imaging and developing risk models for at-risk individuals and those with cardiac disease. This article explores the growing role of AI in TAVR procedures and assesses its potential impact, with particular focus on its ability to improve patient selection, procedural planning, post-implantation monitoring and contribute to optimized patient outcomes. In addition, current challenges and future directions in AI implementation are highlighted.
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Affiliation(s)
- Mina M. Benjamin
- Division of Cardiovascular Medicine, SSM—Saint Louis University Hospital, Saint Louis University, Saint Louis, MO 63104, USA
| | - Mark G. Rabbat
- Department of Cardiovascular Medicine, Loyola University Medical Center, Maywood, IL 60153, USA;
- Department of Cardiology, Edward Hines Jr. VA Hospital, Hines, IL 60141, USA
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Russo M, Corcione N, Cammardella AG, Ranocchi F, Lio A, Saitto G, Nicolò F, Pergolini A, Polizzi V, Ferraro P, Morello A, Cimmino M, Albanese M, Nestola L, Biondi-Zoccai G, Pepe M, Bardi L, Giordano A, Musumeci F. Transcatheter aortic valve implantation in patients with age ≤70 years: experience from two leading structural heart disease centers. Minerva Cardiol Angiol 2023; 71:324-332. [PMID: 35332751 DOI: 10.23736/s2724-5683.22.06040-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
BACKGROUND Transcatheter aortic valve implantation (TAVI) is emerging as an appealing management strategy for patients with severe aortic stenosis at intermediate, high or exceedingly high risk, but its risk-benefit profile in younger patients is less certain. We aimed to explore the outlook of patients aged 70 years or less and undergoing TAVI at 2 high-volume Italian institutions. METHODS We retrospectively collected baseline, imaging, procedural and outcome features of patients with age ≤70 years in whom TAVI was attempted at participating centers between 2012 and 2021. Non-parametric tests and bootstrap resampling were used for inferential purposes. RESULTS A total of 39 patients were included, out of >3000 screened with heart team involvement and >1500 receiving TAVI. Most common or relevant indications for TAVI reduced life expectancy (e.g. cardiogenic shock or severe left ventricular systolic dysfunction), chronic obstructive pulmonary disease, morbid obesity, active or recent extra-cardiac cancer, porcelain aorta, neurologic disability, cirrhosis, or prior surgical aortic valve replacement, as well as extreme cachexia, and Hutchinson-Gilford progeria. At least two contemporary high-risk features were present in most cases. Transapical access was used in 5 (12.8%) cases, and a sheathless approach in 15 (38.5%). A variety of devices were used, including both balloon- and self-expandable devices. Clinical outcomes were satisfactory, despite the high-risk profile, at both short- and mid-term, with no in-hospital death, and 5.1% (95% confidence interval 0-12.8%) mortality at a median follow-up of 15 months (minimum 1; maximum 85). Notably, no case of significant valve deterioration requiring reintervention occurred. CONCLUSIONS In carefully selected patients with 70 years or less of age and prohibitive risk for surgery or reduced life expectancy, TAVI represents a safe option with a favorable mid-term survival and low rate of adverse events.
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Affiliation(s)
- Marco Russo
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy -
| | - Nicola Corcione
- Cardiovascular Interventional Unit, Pineta Grande Hospital, Castel Volturno, Caserta, Italy
| | - Antonio G Cammardella
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
| | - Federico Ranocchi
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
| | - Antonio Lio
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
| | - Guglielmo Saitto
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
| | - Francesca Nicolò
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
| | - Amedeo Pergolini
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
| | - Vincenzo Polizzi
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
| | - Paolo Ferraro
- Unit of Hemodynamics, Santa Lucia Hospital, San Giuseppe Vesuviano, Naples, Italy
| | - Alberto Morello
- Cardiovascular Interventional Unit, Pineta Grande Hospital, Castel Volturno, Caserta, Italy
| | - Michele Cimmino
- Cardiovascular Interventional Unit, Pineta Grande Hospital, Castel Volturno, Caserta, Italy
| | - Michele Albanese
- Unit of Hemodynamics, Santa Lucia Hospital, San Giuseppe Vesuviano, Naples, Italy
| | - Luisa Nestola
- Cardiovascular Interventional Unit, Pineta Grande Hospital, Castel Volturno, Caserta, Italy
| | - Giuseppe Biondi-Zoccai
- Department of Medical-Surgical Sciences and Biotechnologies, Sapienza University, Latina, Italy
- Mediterranea Cardiocentro, Naples, Italy
| | - Martino Pepe
- Section of Cardiovascular Diseases, Department of Emergency and Organ Transplantation (DETO), University of Bari Aldo Moro, Bari, Italy
| | - Luca Bardi
- Cardiovascular Interventional Unit, Pineta Grande Hospital, Castel Volturno, Caserta, Italy
| | - Arturo Giordano
- Cardiovascular Interventional Unit, Pineta Grande Hospital, Castel Volturno, Caserta, Italy
| | - Francesco Musumeci
- Department of Cardiac Surgery and Heart Transplantation, San Camillo Forlanini Hospital, Rome, Italy
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Krajnc D, Spielvogel CP, Grahovac M, Ecsedi B, Rasul S, Poetsch N, Traub-Weidinger T, Haug AR, Ritter Z, Alizadeh H, Hacker M, Beyer T, Papp L. Automated data preparation for in vivo tumor characterization with machine learning. Front Oncol 2022; 12:1017911. [PMID: 36303841 PMCID: PMC9595446 DOI: 10.3389/fonc.2022.1017911] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 09/23/2022] [Indexed: 11/23/2022] Open
Abstract
Background This study proposes machine learning-driven data preparation (MLDP) for optimal data preparation (DP) prior to building prediction models for cancer cohorts. Methods A collection of well-established DP methods were incorporated for building the DP pipelines for various clinical cohorts prior to machine learning. Evolutionary algorithm principles combined with hyperparameter optimization were employed to iteratively select the best fitting subset of data preparation algorithms for the given dataset. The proposed method was validated for glioma and prostate single center cohorts by 100-fold Monte Carlo (MC) cross-validation scheme with 80-20% training-validation split ratio. In addition, a dual-center diffuse large B-cell lymphoma (DLBCL) cohort was utilized with Center 1 as training and Center 2 as independent validation datasets to predict cohort-specific clinical endpoints. Five machine learning (ML) classifiers were employed for building prediction models across all analyzed cohorts. Predictive performance was estimated by confusion matrix analytics over the validation sets of each cohort. The performance of each model with and without MLDP, as well as with manually-defined DP were compared in each of the four cohorts. Results Sixteen of twenty established predictive models demonstrated area under the receiver operator characteristics curve (AUC) performance increase utilizing the MLDP. The MLDP resulted in the highest performance increase for random forest (RF) (+0.16 AUC) and support vector machine (SVM) (+0.13 AUC) model schemes for predicting 36-months survival in the glioma cohort. Single center cohorts resulted in complex (6-7 DP steps) DP pipelines, with a high occurrence of outlier detection, feature selection and synthetic majority oversampling technique (SMOTE). In contrast, the optimal DP pipeline for the dual-center DLBCL cohort only included outlier detection and SMOTE DP steps. Conclusions This study demonstrates that data preparation prior to ML prediction model building in cancer cohorts shall be ML-driven itself, yielding optimal prediction models in both single and multi-centric settings.
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Affiliation(s)
- Denis Krajnc
- QIMP Team, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Clemens P. Spielvogel
- Department of Biomedical Imaging and Image-guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, Vienna, Austria
- Christian Doppler Laboratory for Applied Metabolomics, Medical University of Vienna, Vienna, Austria
| | - Marko Grahovac
- Department of Biomedical Imaging and Image-guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, Vienna, Austria
| | - Boglarka Ecsedi
- QIMP Team, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Sazan Rasul
- Department of Biomedical Imaging and Image-guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, Vienna, Austria
| | - Nina Poetsch
- Department of Biomedical Imaging and Image-guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, Vienna, Austria
| | - Tatjana Traub-Weidinger
- Department of Biomedical Imaging and Image-guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, Vienna, Austria
| | - Alexander R. Haug
- Department of Biomedical Imaging and Image-guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, Vienna, Austria
- Christian Doppler Laboratory for Applied Metabolomics, Medical University of Vienna, Vienna, Austria
| | - Zsombor Ritter
- Department of Medical Imaging, University of Pécs, Medical School, Pécs, Hungary
| | - Hussain Alizadeh
- 1st Department of Internal Medicine, University of Pécs, Medical School, Pécs, Hungary
| | - Marcus Hacker
- Department of Biomedical Imaging and Image-guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, Vienna, Austria
| | - Thomas Beyer
- QIMP Team, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Laszlo Papp
- QIMP Team, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
- Applied Quantum Computing group, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
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