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Xu K, Liu Y. Horizontal Distortion Correction of AFM Images Based on Automatic Labeling of Feature Graphics. Microsc Res Tech 2025; 88:1392-1408. [PMID: 39764624 DOI: 10.1002/jemt.24793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Revised: 12/22/2024] [Accepted: 12/24/2024] [Indexed: 04/07/2025]
Abstract
The atomic force microscope (AFM) image will be inclined and bent due to the tilt angle between the probe and the sample surface. When the least squares fitting method is used to correct the horizontal distortion of the AFM image, the shape structure that is lower or higher than the sample base will affect the final fitting correction result. In view of the limitations of existing methods and the diversity of AFM images, an AFM image level distortion correction method based on automatic feature marking is proposed. The Canny edge detection algorithm with adaptive threshold is used to automatically detect and recognize the feature graphics, and the feature graphics are zeroed by the hole filling algorithm to automatically remove the feature graphics data from the line fitting data. After completing the least squares fitting correction of all the rows of data, the full AFM image data with eliminating horizontal distortion can be obtained. Finally, the corrected full image data are used for imaging. This method can be adapted to different types of AFM images and realize automatic fitting correction of the whole image, which improves the accuracy and efficiency of correction.
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Affiliation(s)
- Ke Xu
- School of Electrical & Control Engineering, Shenyang Jianzhu University, Shenyang, China
| | - Yuzhe Liu
- School of Electrical & Control Engineering, Shenyang Jianzhu University, Shenyang, China
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Yang Z, Xu R, Zhao D, Li Y, Yu W, Wang J. Calibration of the lateral spring constant for a custom T-shaped atomic force microscopy probe. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2025; 96:033704. [PMID: 40116611 DOI: 10.1063/5.0249211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2024] [Accepted: 02/24/2025] [Indexed: 03/23/2025]
Abstract
Atomic force microscopy (AFM) is a versatile tool for investigating nanotribology, where the probe's lateral spring constant is a critical parameter. This work introduced a method to calibrate the lateral spring constant of a T-shaped probe integrated into a custom AFM system. An expression for the lateral spring constant of the probe was derived by correlating the probe's lateral bending and torsional resonance frequencies with its reduced masses and moments of inertia. In the experiment, electrochemical etching was utilized to gradually reduce the mass of the probe tip. The probe's resonance was excited using three piezoelectric techniques, allowing the measurement of resonance frequencies across different vibration modes. Finite element analysis was performed to predict the lateral spring constants of probes with varying dimensions, confirming the reliability of the proposed method.
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Affiliation(s)
- Zhimu Yang
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, Department of Mechanical Engineering, Southeast University, Nanjing 210096, People's Republic of China
| | - Rui Xu
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, Department of Mechanical Engineering, Southeast University, Nanjing 210096, People's Republic of China
| | - Dongchao Zhao
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, Department of Mechanical Engineering, Southeast University, Nanjing 210096, People's Republic of China
| | - Yifan Li
- School of Energy and Materials, Shanghai Polytechnic University, Shanghai 201209, People's Republic of China
| | - Wei Yu
- School of Energy and Materials, Shanghai Polytechnic University, Shanghai 201209, People's Republic of China
| | - Jianli Wang
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, Department of Mechanical Engineering, Southeast University, Nanjing 210096, People's Republic of China
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Su S, Zhao J, Ly TH. Scanning Probe Microscopies for Characterizations of 2D Materials. SMALL METHODS 2024; 8:e2400211. [PMID: 38766949 PMCID: PMC11579571 DOI: 10.1002/smtd.202400211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 04/12/2024] [Indexed: 05/22/2024]
Abstract
2D materials are intriguing due to their remarkably thin and flat structure. This unique configuration allows the majority of their constituent atoms to be accessible on the surface, facilitating easier electron tunneling while generating weak surface forces. To decipher the subtle signals inherent in these materials, the application of techniques that offer atomic resolution (horizontal) and sub-Angstrom (z-height vertical) sensitivity is crucial. Scanning probe microscopy (SPM) emerges as the quintessential tool in this regard, owing to its atomic-level spatial precision, ability to detect unitary charges, responsiveness to pico-newton-scale forces, and capability to discern pico-ampere currents. Furthermore, the versatility of SPM to operate under varying environmental conditions, such as different temperatures and in the presence of various gases or liquids, opens up the possibility of studying the stability and reactivity of 2D materials in situ. The characteristic flatness, surface accessibility, ultra-thinness, and weak signal strengths of 2D materials align perfectly with the capabilities of SPM technologies, enabling researchers to uncover the nuanced behaviors and properties of these advanced materials at the nanoscale and even the atomic scale.
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Affiliation(s)
- Shaoqiang Su
- Department of Chemistry and Center of Super‐Diamond & Advanced Films (COSDAF)City University of Hong KongKowloon999077China
| | - Jiong Zhao
- Department of Applied PhysicsThe Hong Kong Polytechnic UniversityKowloonHong Kong999077P. R. China
- The Hong Kong Polytechnic University Shenzhen Research InstituteShenzhen518057China
| | - Thuc Hue Ly
- Department of Chemistry and Center of Super‐Diamond & Advanced Films (COSDAF)City University of Hong KongKowloon999077China
- Department of Chemistry and State Key Laboratory of Marine PollutionCity University of Hong KongHong Kong999077China
- City University of Hong Kong Shenzhen Research InstituteShenzhen518057China
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do Nascimento Amorim MDS, Silva França ÁR, Santos-Oliveira R, Rodrigues Sanches J, Marinho Melo T, Araújo Serra Pinto B, Barbosa LRS, Alencar LMR. Atomic Force Microscopy Applied to the Study of Tauopathies. ACS Chem Neurosci 2024; 15:699-715. [PMID: 38305187 DOI: 10.1021/acschemneuro.3c00819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024] Open
Abstract
Atomic force microscopy (AFM) is a scanning probe microscopy technique which has a physical principle, the measurement of interatomic forces between a very thin tip and the surface of a sample, allowing the obtaining of quantitative data at the nanoscale, contributing to the surface study and mechanical characterization. Due to its great versatility, AFM has been used to investigate the structural and nanomechanical properties of several inorganic and biological materials, including neurons affected by tauopathies. Tauopathies are neurodegenerative diseases featured by aggregation of phosphorylated tau protein inside neurons, leading to functional loss and progressive neurotoxicity. In the broad universe of neurodegenerative diseases, tauopathies comprise the most prevalent, with Alzheimer's disease as its main representative. This review highlights the use of AFM as a suitable research technique for the study of cellular damages in tauopathies, even in early stages, allowing elucidation of pathogenic mechanisms of these diseases.
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Affiliation(s)
- Maria do Socorro do Nascimento Amorim
- Laboratory of Biophysics and Nanosystems, Department of Physics, Federal University of Maranhão, Campus Bacanga, São Luís 65080-805, Maranhão, Brazil
| | - Álefe Roger Silva França
- Laboratory of Biophysics and Nanosystems, Department of Physics, Federal University of Maranhão, Campus Bacanga, São Luís 65080-805, Maranhão, Brazil
| | - Ralph Santos-Oliveira
- Nuclear Engineering Institute, Brazilian Nuclear Energy Commission, Rio de Janeiro 21941906, Brazil
- Laboratory of Nanoradiopharmacy, Rio de Janeiro State University, Rio de Janeiro 23070200, Brazil
| | - Jonas Rodrigues Sanches
- Laboratory of Experimental Physiology, Department of Physiological Sciences, Federal University of Maranhão, Campus Bacanga, São Luís, 65080-805, Maranhão, Brazil
| | - Thamys Marinho Melo
- Laboratory of Experimental Physiology, Department of Physiological Sciences, Federal University of Maranhão, Campus Bacanga, São Luís, 65080-805, Maranhão, Brazil
| | - Bruno Araújo Serra Pinto
- Laboratory of Experimental Physiology, Department of Physiological Sciences, Federal University of Maranhão, Campus Bacanga, São Luís, 65080-805, Maranhão, Brazil
| | - Leandro R S Barbosa
- Department of General Physics, Institute of Physics, University of São Paulo, São Paulo 05508-000, SP, Brazil
- Brazilian Synchrotron Light Laboratory (LNLS), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas 13083-100, SP, Brazil
| | - Luciana Magalhães Rebelo Alencar
- Laboratory of Biophysics and Nanosystems, Department of Physics, Federal University of Maranhão, Campus Bacanga, São Luís 65080-805, Maranhão, Brazil
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