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Abdul Raheem AK, Dhannoon BN. A Novel Deep Learning Model for Drug-drug Interactions. Curr Comput Aided Drug Des 2024; 20:666-672. [PMID: 38804324 DOI: 10.2174/0115734099265663230926064638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Revised: 07/29/2023] [Accepted: 08/16/2023] [Indexed: 05/29/2024]
Abstract
INTRODUCTION Drug-drug interactions (DDIs) can lead to adverse events and compromised treatment efficacy that emphasize the need for accurate prediction and understanding of these interactions. METHODS In this paper, we propose a novel approach for DDI prediction using two separate message-passing neural network (MPNN) models, each focused on one drug in a pair. By capturing the unique characteristics of each drug and their interactions, the proposed method aims to improve the accuracy of DDI prediction. The outputs of the individual MPNN models combine to integrate the information from both drugs and their molecular features. Evaluating the proposed method on a comprehensive dataset, we demonstrate its superior performance with an accuracy of 0.90, an area under the curve (AUC) of 0.99, and an F1-score of 0.80. These results highlight the effectiveness of the proposed approach in accurately identifying potential drugdrug interactions. RESULTS The use of two separate MPNN models offers a flexible framework for capturing drug characteristics and interactions, contributing to our understanding of DDIs. The findings of this study have significant implications for patient safety and personalized medicine, with the potential to optimize treatment outcomes by preventing adverse events. CONCLUSION Further research and validation on larger datasets and real-world scenarios are necessary to explore the generalizability and practicality of this approach.
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Affiliation(s)
- Ali K Abdul Raheem
- Department of Software, College of Information Technology, University of Babylon, Hillah, Babil, Iraq
- University of Warith Al-Anbiyaa, Karbala, Iraq
| | - Ban N Dhannoon
- Department of Computer Science, College of Science, Al-Nahrain University, Baghdad, Iraq
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Kablanbekov A, Yefremova S, Berdikulova F, Satbaev S, Yermishin S, Shalabaev N, Satbaev B, Terlikbayeva A, Zharmenov A. Rice Husk Cellulose-Based Adsorbent to Extract Rare Metals: Preparing and Properties. MATERIALS (BASEL, SWITZERLAND) 2023; 16:6277. [PMID: 37763555 PMCID: PMC10533061 DOI: 10.3390/ma16186277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 09/11/2023] [Accepted: 09/15/2023] [Indexed: 09/29/2023]
Abstract
Adsorption is one of the common stages in the hydrometallurgy of rare metals. Its efficiency is largely determined by the quality of the sorbent used. The purpose of this work was to create an activated sorbent based on rice husk cellulose for the extraction of rhenium from aqueous solutions. Two types of cellulose were obtained by treating rice husk with a 1.5% NaOH solution (alkaline cellulose) and a nitric acid solution in ethyl alcohol (Kürschner and Hoffer cellulose). They were tested by IR, SEM, TA, TPD-MS, and XRD methods. It was found that Kürschner and Hoffer cellulose does not contain lignin and retains structural order to a greater extent. By means of this cellulose carbonization at 600 °C and activation by physical, chemical, and combined methods, a series of sorbents were prepared and studied by different methods. It was determined that the sorbent KHC4-600VA obtained by combined activation of cellulose carbonizate by water vapor at 850 °C, followed by an alkaline treatment, has the best textural characteristics: S-~1200 m2·g-1, V-1.22 cm3·g-1, and R-2.05 nm. KHC4-600VA provides 90% recovery of Re (VII) ions from aqueous solutions. According to the Freundlich model, sorption proceeds favorably on the sorbent's heterogeneous surface.
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Affiliation(s)
- Askhat Kablanbekov
- National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan RSE, Almaty 050036, Kazakhstan; (A.K.); (F.B.); (S.Y.); (A.T.); (A.Z.)
- School of Materials Science and Green Technologies, Kazakh-British Technical University, Almaty 050000, Kazakhstan
| | - Svetlana Yefremova
- National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan RSE, Almaty 050036, Kazakhstan; (A.K.); (F.B.); (S.Y.); (A.T.); (A.Z.)
| | - Feruza Berdikulova
- National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan RSE, Almaty 050036, Kazakhstan; (A.K.); (F.B.); (S.Y.); (A.T.); (A.Z.)
| | - Serik Satbaev
- RSE Astana Branch National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan, Astana 010000, Kazakhstan; (S.S.); (N.S.); (B.S.)
| | - Sergey Yermishin
- National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan RSE, Almaty 050036, Kazakhstan; (A.K.); (F.B.); (S.Y.); (A.T.); (A.Z.)
| | - Nurgali Shalabaev
- RSE Astana Branch National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan, Astana 010000, Kazakhstan; (S.S.); (N.S.); (B.S.)
- The Department of Nanotechnology and Metallurgy, Mechanical Engineering Faculty, Karaganda Technical University, Karaganda 100000, Kazakhstan
| | - Baimakhan Satbaev
- RSE Astana Branch National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan, Astana 010000, Kazakhstan; (S.S.); (N.S.); (B.S.)
| | - Alma Terlikbayeva
- National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan RSE, Almaty 050036, Kazakhstan; (A.K.); (F.B.); (S.Y.); (A.T.); (A.Z.)
| | - Abdurassul Zharmenov
- National Center on Complex Processing of Mineral Raw Materials of the Republic of Kazakhstan RSE, Almaty 050036, Kazakhstan; (A.K.); (F.B.); (S.Y.); (A.T.); (A.Z.)
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Liu Y, Wang E, Kan Z, Liu B, Bai L, Wang Q, Zhang X. Co-hydrothermal carbonization of oil shale and rice husk: Combustion, pyrolysis characteristics, and synergistic effect. WASTE MANAGEMENT & RESEARCH : THE JOURNAL OF THE INTERNATIONAL SOLID WASTES AND PUBLIC CLEANSING ASSOCIATION, ISWA 2023; 41:442-456. [PMID: 36127886 DOI: 10.1177/0734242x221122539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Countries all over the world are looking for fuel to replace fossil energy due to environmental concerns and a scarcity of fossil fuels. Oil shale (OS) and rice husk (RH) are both viable fuels, although they both have issues like high ash content and poor calorific value. OS and RH were used as feedstock for high-quality fuel in this study, which uses a hydrothermal technique to provide a novel way to utilize OS and rice. At different hydrothermal temperatures (150, 200 and 250 °C), including combustion and pyrolysis processes, the thermogravimetric analyzer (TGA) was used to analyse thermal transformation characteristics of co-hydrothermal carbonization (co-HTC) of OS and RH, as well as the synergistic effects. Results showed that the co-HTC pretreatment had a significant effect on the thermal transformation behaviour of OS and RH. On the one hand, the co-HTC has higher volatile content than its calculated value. On the other hand, a synergistic effect was found in combustion processes, and this effect was the most obvious when the hydrothermal temperature was around 200 °C, and the characteristic peak of functional groups vibration was strong. Therefore, the co-HTC was considered suitable for combustion. The combination of co-HTC modification with subsequent thermochemical processes has positive implications for the energy production and utilization of organic waste.
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Affiliation(s)
- Yaoxin Liu
- School of Energy and Power, Shenyang Institute of Engineering, Shenyang, China
| | - Enyu Wang
- Graduate Faculty, Shenyang Institute of Engineering, Shenyang, China
| | - Ze Kan
- Graduate Faculty, Shenyang Institute of Engineering, Shenyang, China
| | - Baotong Liu
- International Business School, Shenyang Normal University, Shenyang, Liaoning, China
| | - Ling Bai
- Journal Editorial Department, Shenyang Institute of Engineering, Shenyang, China
| | - Qiang Wang
- School of Energy and Power, Shenyang Institute of Engineering, Shenyang, China
| | - Xiaohui Zhang
- School of Energy and Power, Shenyang Institute of Engineering, Shenyang, China
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Catalytic Pyrolysis of Lignin Model Compound (Ferulic Acid) over Alumina: Surface Complexes, Kinetics, and Mechanisms. Catalysts 2021. [DOI: 10.3390/catal11121508] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Studies of the thermochemical properties of the important model compound of lignin-ferulic acid (FA) and its surface complexes are substantial for developing technologies for catalytic pyrolysis of renewable biomass into biofuels and lignin-derived chemicals as well as for bio-oil upgrading. In this work, the catalytic pyrolysis of ferulic acid over alumina was studied by temperature-programmed desorption mass spectrometry (TPD MS), in situ FT-IR spectroscopy, thermogravimetric analysis, and DFT calculations. We established that both the carboxyl group and the active groups (HO and CH3O) of the aromatic ring interact with the alumina surface. We calculated the kinetic parameters of formation of the main products of catalytic pyrolysis: 4-vinylguaiacol, guaiacol, hydroxybenzene, benzene, toluene, cresol, naphthalene, and PACs. Possible methods of their forming from the related surface complexes of FA are suggested.
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Catalytic Pyrolysis of Lignin Model Compounds (Pyrocatechol, Guaiacol, Vanillic and Ferulic Acids) over Nanoceria Catalyst for Biomass Conversion. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11167205] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Understanding the mechanisms of thermal transformations of model lignin compounds (MLC) over nanoscale catalysts is important for improving the technologic processes occurring in the pyrolytic conversion of lignocellulose biomass into biofuels and value-added chemicals. Herein, we investigate catalytic pyrolysis of MLC (pyrocatechol (P), guaiacol (G), ferulic (FA), and vanillic acids (VA)) over nanoceria using FT-IR spectroscopy, temperature-programmed desorption mass spectrometry (TPD MS), and thermogravimetric analysis (DTG/DTA/TG). FT-IR spectroscopic studies indicate that the active groups of aromatic rings of P, G, VA, and FA as well as carboxylate groups of VA and FA are involved in the interaction with nanoceria surface. We explore the general transformation mechanisms of different surface complexes and identify their decomposition products. We demonstrate that decomposition of carboxylate acid complexes occurs by decarboxylation. When FA is used as a precursor, this reaction generates 4-vinylguaiacol. Complexes of VA and FA formed through both active groups of the aromatic ring and decompose on the CeO2 surface to generate hydroxybenzene. The formation of alkylated products accompanies catalytic pyrolysis of acids due to processes of transalkylation on the surface.
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Rice Husk Research: From Environmental Pollutant to a Promising Source of Organo-Mineral Raw Materials. MATERIALS 2021; 14:ma14154119. [PMID: 34361313 PMCID: PMC8348607 DOI: 10.3390/ma14154119] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 07/16/2021] [Accepted: 07/20/2021] [Indexed: 11/23/2022]
Abstract
Rice husk is a large-tonnage waste left from rice production. It is not subject to humification and therefore becomes a serious environmental pollutant. Due to the presence of two essential elements—carbon and silicon—in its composition, rice husk is a promising organo-mineral raw material. The known methods for processing of rice husk are associated with the formation of even more aggressive waste. The creation of a waste-free technology for processing this plant material requires a detailed study. Rice husk of Kyzylorda oblast was studied using IR, SEM, TA, TPD-MS, EPR, and TEM methods. It was determined that under a temperature up to 500 °C, the ligno-carbohydrate component of rice husk decomposes almost completely. Three main peaks are recorded during the decomposition: hemicellulose at 200 °C, cellulose at 265 °C, and lignin at 350–360 °C. This process is endothermic. However, above of 300 °C the exothermic reactions associated with the formation of new substances and condensation processes in the solid residue begin to prevail. This explains the increase in the concentration of paramagnetic centers (PMCs) in products of rice husk carbonization in the range of up to 450 °C. Further increase in temperature leads to a decrease in the number of PMCs as a result of carbon graphite-like structures formation. The silicon–carbon product of rice husk carbonization (nanocomposite) is formed by interconnected nanoscale particles of carbon and silicon dioxide, the modification of which depends on the temperature of carbonization. The obtained data allow management of the rice husk utilization process while manufacturing products in demand based on ecofriendly technologies.
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Rosado MJ, Rencoret J, Marques G, Gutiérrez A, del Río JC. Structural Characteristics of the Guaiacyl-Rich Lignins From Rice ( Oryza sativa L.) Husks and Straw. FRONTIERS IN PLANT SCIENCE 2021; 12:640475. [PMID: 33679856 PMCID: PMC7932998 DOI: 10.3389/fpls.2021.640475] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 01/26/2021] [Indexed: 05/28/2023]
Abstract
Rice (Oryza sativa L.) is a major cereal crop used for human nutrition worldwide. Harvesting and processing of rice generates huge amounts of lignocellulosic by-products such as rice husks and straw, which present important lignin contents that can be used to produce chemicals and materials. In this work, the structural characteristics of the lignins from rice husks and straw have been studied in detail. For this, whole cell walls of rice husks and straw and their isolated lignin preparations were thoroughly analyzed by an array of analytical techniques, including pyrolysis coupled to gas chromatography-mass spectrometry (Py-GC/MS), nuclear magnetic resonance (NMR), and derivatization followed by reductive cleavage (DFRC). The analyses revealed that both lignins, particularly the lignin from rice husks, were highly enriched in guaiacyl (G) units, and depleted in p-hydroxyphenyl (H) and syringyl (S) units, with H:G:S compositions of 7:81:12 (for rice husks) and 5:71:24 (for rice straw). These compositions were reflected in the relative abundances of the different interunit linkages. Hence, the lignin from rice husks were depleted in β-O-4' alkyl-aryl ether units (representing 65% of all inter-unit linkages), but presented important amounts of β-5' (phenylcoumarans, 23%) and other condensed units. On the other hand, the lignin from rice straw presented higher levels of β-O-4' alkyl-aryl ethers (78%) but lower levels of phenylcoumarans (β-5', 12%) and other condensed linkages, consistent with a lignin with a slightly higher S/G ratio. In addition, both lignins were partially acylated at the γ-OH of the side-chain (ca. 10-12% acylation degree) with p-coumarates, which overwhelmingly occurred over S-units. Finally, important amounts of the flavone tricin were also found incorporated into these lignins, being particularly abundant in the lignin of rice straw.
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Affiliation(s)
| | | | | | | | - José C. del Río
- Department of Plant Biotechnology, Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
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