1
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Zhang Y, Tang H, Zou W. Prediction of 57Fe Mössbauer Nuclear Quadrupole Splittings with Hybrid and Double-Hybrid Density Functionals. Int J Mol Sci 2025; 26:2821. [PMID: 40141462 PMCID: PMC11942716 DOI: 10.3390/ijms26062821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Revised: 03/14/2025] [Accepted: 03/18/2025] [Indexed: 03/28/2025] Open
Abstract
As a crucial parameter in Mössbauer spectroscopy, nuclear quadrupole splitting (NQS) exhibits a strong dependence on quantum chemistry methods, which makes accurate theoretical predictions challenging. Meanwhile, the continuous emergence of new density functionals presents opportunities to advance current NQS research. In this study, we evaluate the performance of eleven hybrid density functionals and twelve double-hybrid density functionals, selected from widely used functionals and newly developed functionals, in predicting the NQS values of the 57Fe nuclide for 32 iron-containing molecules within about 70 atoms. The calculations have incorporated scalar relativistic effects using the exact two-component (X2C) Hamiltonian. In general, the double-hybrid functional PBE-0DH demonstrates superior performance compared to the experimental values, achieving a mean absolute error (MAE) of 0.20 mm/s. Meanwhile, rSCAN38 is the best hybrid functional for our database with an MAE = 0.25 mm/s, and it offers a significant advantage in computational efficiency over PBE-0DH. The +/- sign of NQS has also been considered in our error statistics when it has a clear physical meaning; if neglected, the errors of many functionals decrease, but PBE-0DH and rSCAN38 remain unaffected. Notably, when calculating ferrocene [Fe(C5H5)2], which involves strong static correlations, all hybrid functionals that incorporate more than 10% exact exchange fail, while several double-hybrid functionals continue to deliver reliable results. In addition, we encountered two particularly challenging species characterized by strong static correlations: [Fe(H2O)5NO]2+ and FeO2--porphyrin. Unfortunately, none of the density functionals tested in our study yielded satisfactory results for the two cases since the density functional theory (DFT) is a single-determinant approach, and it is imperative to explore large-scale multi-configurational methods for these species. This research offers valuable guidance for selecting density functionals in Mössbauer NQS calculations and serves as a reference point for the future development of new density functionals.
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Affiliation(s)
- Yihao Zhang
- Institute of Modern Physics, Northwest University, Xi’an 710127, China; (Y.Z.); (H.T.)
- School of Physics, Northwest University, Xi’an 710127, China
| | - Haonan Tang
- Institute of Modern Physics, Northwest University, Xi’an 710127, China; (Y.Z.); (H.T.)
- Shaanxi Key Laboratory for Theoretical Physics Frontiers, Xi’an 710127, China
| | - Wenli Zou
- Institute of Modern Physics, Northwest University, Xi’an 710127, China; (Y.Z.); (H.T.)
- Shaanxi Key Laboratory for Theoretical Physics Frontiers, Xi’an 710127, China
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2
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Kiani A, Zhou W, Wolf LM. Intermolecular interaction potential maps from energy decomposition for interpreting reactivity and intermolecular interactions. Phys Chem Chem Phys 2024; 27:47-61. [PMID: 39530509 DOI: 10.1039/d4cp03237c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
The electrostatic potential (ESP) has been widely used to visualize electrostatic interactions about a molecule. However, electrostatic effects are often insufficient for capturing the entirety of an interaction or a reaction of interest. In this investigation, intermolecular interaction potential maps (IMIPs), constructed from the potentials derived from energy decomposition analysis (EDA) using density functional theory, were developed and applied to provide unique insight into molecular interactions and reactivity. To this end, rather than constructing a potential map from probe point charge interactions, IMIPs were constructed from probe interactions with small molecular fragments, including CH3+, CH3-, benzene, and atomic probes including alkali metals, transition metals, and halides. The interaction potentials are further decomposed producing IMIPs for each interaction component using EDA (electrostatic, orbital, steric, etc.). The IMIPs are applied to the study of various interactions including cation-π and anion-π interactions, electrophilic and nucleophilic aromatic substitution, Lewis acid activation, π-stacking, endohedral fullerenes, and select organometallics which reveal fundamental insight into the positional preferences and physical origins of the interactions that otherwise would be difficult to uncover through other surface analyses.
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Affiliation(s)
- Amin Kiani
- Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
| | - Wentong Zhou
- Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
| | - Lawrence M Wolf
- Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
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3
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Tarekuzzaman M, Ishraq MH, Parves MS, Rayhan MA, Ahmad S, Rasheduzzaman M, Al Mamun KA, Hossen MM, Hasan MZ. An in-depth investigation of lead-free KGeCl 3 perovskite solar cells employing optoelectronic, thermomechanical, and photovoltaic properties: DFT and SCAPS-1D frameworks. Phys Chem Chem Phys 2024; 26:27704-27734. [PMID: 39470008 DOI: 10.1039/d4cp02974g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/30/2024]
Abstract
Potassium germanium chloride (KGeCl3) has emerged as a promising contender for use as an absorber material for lead-free perovskite solar cells (PSCs), offering significant potential in this domain. In this study, we conducted a density functional theory (DFT) investigation to analyze and assess the structural, electronic, thermomechanical, and optical characteristics of the cubic KGeCl3 absorber. The positive phonon dispersion curve confirmed the dynamical stability of KGeCl3. The elastic constant satisfied the Born criteria, validating the mechanical stability and ductility of solid KGeCl3. The electronic band structure and density of states (DOS) confirmed that the KGeCl3 material is a semiconductor with a direct band gap of 0.754 eV (GGA) and 0.803 eV (mGGA-RSCAN). The study identified key optical parameters, including absorption, conductivity, reflectivity, dielectric function, refractive index, and loss function, revealing the potential suitability of KGeCl3 for solar applications. The Helmholtz free energy (F), internal energy (E), entropy (S), and specific heat capacity (Cv) are computed based on the phonon density of states. Additionally, we investigated twenty-four configurations comprising different combinations of electron transport layers (ETLs) and hole transport layers (HTLs) in SCAPS-1D software. For this purpose, ETLs such as Ws2, ZnSe, PCBM, and C60 and HTLs such as CBTS, CdTe, CFTS, Cu2O, P3HT, and PEDOT:PSS are employed. The highlighted structure, ITO/CBTS/KGeCl3/Ws2/Ni, demonstrates remarkable performance with an efficiency of 22.01%, a Voc of 0.6799 V, a Jsc of 41.439 mA cm-2, and a FF of 78.12%. To analyze photovoltaic (PV) performance, we chose the top four solar cell (SC) configurations. Moreover, a comprehensive examination was conducted to assess the impact of various factors, including the thickness of different layers, capacitance, Mott-Schottky behavior, series and shunt resistance, temperature, and generation-recombination rates, as well as J-V (current-voltage density) and quantum efficiency (QE) characteristics.
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Affiliation(s)
- Md Tarekuzzaman
- Materials Research and Simulation Lab, Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh.
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh
| | - Mohammad Hasin Ishraq
- Materials Research and Simulation Lab, Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh.
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh
| | - Md Shahazan Parves
- Materials Research and Simulation Lab, Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh.
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh
| | - M A Rayhan
- Department of Arts and Sciences, Bangladesh Army University of Science and Technology, Saidpur 5310, Nilphamari, Bangladesh
| | - Sohail Ahmad
- Department of Physics, College of Science, P O Box 9004, King Khalid University, Abha, Saudi Arabia
| | - Md Rasheduzzaman
- Materials Research and Simulation Lab, Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh.
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh
| | - K A Al Mamun
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh
| | - M Moazzam Hossen
- Department of Computer Science and Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh
| | - Md Zahid Hasan
- Materials Research and Simulation Lab, Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh.
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong, Kumira, Chittagong 4318, Bangladesh
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4
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Hadbi M, Demmouche K, Eddine Mellah D, Coutinho J. Theoretical insights into off-stoichiometric Zr (x)Ti (1-x)IrSb half-Heusler alloys: a first principle calculations. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2024; 37:045702. [PMID: 39433269 DOI: 10.1088/1361-648x/ad899b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Accepted: 10/21/2024] [Indexed: 10/23/2024]
Abstract
This study presents a theoretical investigation into the phase stability, electronic, and optical properties of off-stoichiometricZrxTi1-xIrSb(x= 0, 0.0625, 0.1875, 0.25, 0.50, 0.75, 1) compounds. Using first-principles calculations, we explore how varying Zr and Ti concentrations can tune the electronic and optical properties of these half-Heusler alloys. The Structural, optical, and electronic properties were meticulously analyzed with both the GGA-PBE and Meta-GGA-SCAN approximations, as implemented in the ViennaAb initioSimulation Package (VASP). The dynamical stability of these compounds was assessed using the Phonopy package. Our findings reveal that these alloys exhibit semiconductor behavior with tunable band gaps, and their optical properties show significant variation across different compositions, particularly in the visible light range. The compounds also demonstrate robust dynamical stability, indicating their potential for practical applications in electronic and optoelectronic devices. These results underscore the versatility ofZrxTi1-xIrSballoys and highlight their promise for next-generation technology.
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Affiliation(s)
- Mohammed Hadbi
- University of Ain Temouchent Belhadj Bouchaib, B.P. 284., 46000 Ain Temouchent, Algeria
- Materials Science and Applications Laboratory, Faculty of Sciences and Technology, University of Ain Temouchent Belhadj Bouchaib, B.P. 284., 46000 Ain Temouchent, Algeria
| | - Kamel Demmouche
- University of Ain Temouchent Belhadj Bouchaib, B.P. 284., 46000 Ain Temouchent, Algeria
| | - Djallal Eddine Mellah
- University of Ain Temouchent Belhadj Bouchaib, B.P. 284., 46000 Ain Temouchent, Algeria
| | - Jose Coutinho
- Department of Physics and I3N, University of Aveiro, Campus Santiago, Aveiro 3810-193, Portugal
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5
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Rahman MF, Hasan Toki MN, Irfan A, Chaudhry AR, Rahaman R, Rasheduzzaman M, Hasan MZ. A novel investigation of pressure-induced semiconducting to metallic transition of lead free novel Ba 3SbI 3 perovskite with exceptional optoelectronic properties. RSC Adv 2024; 14:11169-11184. [PMID: 38590348 PMCID: PMC10999911 DOI: 10.1039/d4ra00395k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/27/2024] [Indexed: 04/10/2024] Open
Abstract
The structural, electronic, mechanical, and optical characteristics of barium-based halide perovskite Ba3SbI3 under the influence of pressures ranging from 0 to 10 GPa have been analyzed using first-principles calculations for the first time. The new perovskite Ba3SbI3 material was shown to be a direct band gap semiconductor at 0 GPa, but the band gap diminished when the applied pressure increased from 0 to 10 GPa. So the Ba3SbI3 material undergoes a transition from semiconductor to metallic due to high pressure at 10 GPa. The Ba3SbI3 material also exhibits an increase in optical absorption and conductivity with applied pressure due to the change in band gap, which is more suitable for solar absorbers, surgical instruments, and optoelectronic devices. The charge density maps confirm the presence of both ionic and covalent bonding characteristics. Exploration into the mechanical characteristics indicates that the Ba3SbI3 perovskite is mechanically stable. Additionally, the Ba3SbI3 compound becomes strongly anisotropic at high pressure. The insightful results of our simulations will all be helpful for the experimental structure of a new effective Ba3SbI3-based inorganic perovskite solar cell in the near future.
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Affiliation(s)
- Md Ferdous Rahman
- Advanced Energy Materials and Solar Cell Research Laboratory, Department of Electrical and Electronic Engineering, Begum Rokeya University Rangpur 5400 Bangladesh
| | - Md Naim Hasan Toki
- Advanced Energy Materials and Solar Cell Research Laboratory, Department of Electrical and Electronic Engineering, Begum Rokeya University Rangpur 5400 Bangladesh
| | - Ahmad Irfan
- Department of Chemistry, College of Science, King Khalid University P. O. Box 9004 Abha 61413 Saudi Arabia
| | - Aijaz Rasool Chaudhry
- Department of Physics, College of Science, University of Bisha P. O. Box 551 Bisha 61922 Saudi Arabia
| | - Rajabur Rahaman
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong Kumira Chittagong 4318 Bangladesh
| | - Md Rasheduzzaman
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong Kumira Chittagong 4318 Bangladesh
| | - Md Zahid Hasan
- Department of Electrical and Electronic Engineering, International Islamic University Chittagong Kumira Chittagong 4318 Bangladesh
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6
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Liu R, Zheng D, Liang X, Ren X, Chen M, Li W. Implementation of the meta-GGA exchange-correlation functional in numerical atomic orbital basis: With systematic testing on SCAN, rSCAN, and r2SCAN functionals. J Chem Phys 2023; 159:074109. [PMID: 37602804 DOI: 10.1063/5.0160726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 08/03/2023] [Indexed: 08/22/2023] Open
Abstract
Kohn-Sham density functional theory (DFT) is nowadays widely used for electronic structure theory simulations, and the accuracy and efficiency of DFT rely on approximations of the exchange-correlation functional. By including the kinetic energy density τ, the meta-generalized-gradient approximation (meta-GGA) family of functionals achieves better accuracy and flexibility while retaining the efficiency of semi-local functionals. For example, the strongly constrained and appropriately normed (SCAN) meta-GGA functional has been proven to yield accurate results for solid and molecular systems. We implement meta-GGA functionals with both numerical atomic orbitals and plane wave bases in the ABACUS package. Apart from the exchange-correlation potential, we also discuss the evaluation of force and stress. To validate our implementation, we perform finite-difference tests and convergence tests with the SCAN, rSCAN, and r2SCAN meta-GGA functionals. We further test water hexamers, weakly interacting molecules from the S22 dataset, as well as 13 semiconductors using the three functionals. The results show satisfactory agreement with previous calculations and available experimental values.
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Affiliation(s)
- Renxi Liu
- HEDPS, CAPT, College of Engineering, Peking University, Beijing 100871, People's Republic of China
- Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 90871, People's Republic of China
- AI for Science Institute, Beijing 100080, People's Republic of China
| | - Daye Zheng
- AI for Science Institute, Beijing 100080, People's Republic of China
| | - Xinyuan Liang
- HEDPS, CAPT, College of Engineering, Peking University, Beijing 100871, People's Republic of China
- Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 90871, People's Republic of China
| | - Xinguo Ren
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong 523808, People's Republic of China
| | - Mohan Chen
- HEDPS, CAPT, College of Engineering, Peking University, Beijing 100871, People's Republic of China
- Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 90871, People's Republic of China
- AI for Science Institute, Beijing 100080, People's Republic of China
| | - Wenfei Li
- AI for Science Institute, Beijing 100080, People's Republic of China
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7
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Jana S, Herbert JM. Slater transition methods for core-level electron binding energies. J Chem Phys 2023; 158:094111. [PMID: 36889976 DOI: 10.1063/5.0134459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023] Open
Abstract
Methods for computing core-level ionization energies using self-consistent field (SCF) calculations are evaluated and benchmarked. These include a "full core hole" (or "ΔSCF") approach that fully accounts for orbital relaxation upon ionization, but also methods based on Slater's transition concept in which the binding energy is estimated from an orbital energy level that is obtained from a fractional-occupancy SCF calculation. A generalization that uses two different fractional-occupancy SCF calculations is also considered. The best of the Slater-type methods afford mean errors of 0.3-0.4 eV with respect to experiment for a dataset of K-shell ionization energies, a level of accuracy that is competitive with more expensive many-body techniques. An empirical shifting procedure with one adjustable parameter reduces the average error below 0.2 eV. This shifted Slater transition method is a simple and practical way to compute core-level binding energies using only initial-state Kohn-Sham eigenvalues. It requires no more computational effort than ΔSCF and may be especially useful for simulating transient x-ray experiments where core-level spectroscopy is used to probe an excited electronic state, for which the ΔSCF approach requires a tedious state-by-state calculation of the spectrum. As an example, we use Slater-type methods to model x-ray emission spectroscopy.
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Affiliation(s)
- Subrata Jana
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
| | - John M Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
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8
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Song S, Vuckovic S, Kim Y, Yu H, Sim E, Burke K. Extending density functional theory with near chemical accuracy beyond pure water. Nat Commun 2023; 14:799. [PMID: 36781855 PMCID: PMC9925738 DOI: 10.1038/s41467-023-36094-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 01/13/2023] [Indexed: 02/15/2023] Open
Abstract
Density functional simulations of condensed phase water are typically inaccurate, due to the inaccuracies of approximate functionals. A recent breakthrough showed that the SCAN approximation can yield chemical accuracy for pure water in all its phases, but only when its density is corrected. This is a crucial step toward first-principles biosimulations. However, weak dispersion forces are ubiquitous and play a key role in noncovalent interactions among biomolecules, but are not included in the new approach. Moreover, naïve inclusion of dispersion in HF-SCAN ruins its high accuracy for pure water. Here we show that systematic application of the principles of density-corrected DFT yields a functional (HF-r2SCAN-DC4) which recovers and not only improves over HF-SCAN for pure water, but also captures vital noncovalent interactions in biomolecules, making it suitable for simulations of solutions.
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Affiliation(s)
- Suhwan Song
- grid.15444.300000 0004 0470 5454Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul, 03722 Korea ,grid.266093.80000 0001 0668 7243Department of Chemistry, University of California, Irvine, CA 92697 USA
| | - Stefan Vuckovic
- grid.472716.10000 0004 1758 7362Institute for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, 73100 Lecce, Italy ,grid.12380.380000 0004 1754 9227Departments of Chemistry & Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands
| | - Youngsam Kim
- grid.15444.300000 0004 0470 5454Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul, 03722 Korea
| | - Hayoung Yu
- grid.15444.300000 0004 0470 5454Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul, 03722 Korea
| | - Eunji Sim
- Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul, 03722, Korea.
| | - Kieron Burke
- grid.266093.80000 0001 0668 7243Department of Chemistry, University of California, Irvine, CA 92697 USA ,grid.266093.80000 0001 0668 7243Departments of Physics & Astronomy, University of California, Irvine, CA 92697 USA
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9
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Santra G, Calinsky R, Martin JML. Benefits of Range-Separated Hybrid and Double-Hybrid Functionals for a Large and Diverse Data Set of Reaction Energies and Barrier Heights. J Phys Chem A 2022; 126:5492-5505. [PMID: 35930677 PMCID: PMC9393870 DOI: 10.1021/acs.jpca.2c03922] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 07/28/2022] [Indexed: 11/28/2022]
Abstract
To better understand the thermochemical kinetics and mechanism of a specific chemical reaction, an accurate estimation of barrier heights (forward and reverse) and reaction energies is vital. Because of the large size of reactants and transition state structures involved in real-life mechanistic studies (e.g., enzymatically catalyzed reactions), density functional theory remains the workhorse for such calculations. In this paper, we have assessed the performance of 91 density functionals for modeling the reaction energies and barrier heights on a large and chemically diverse data set (BH9) composed of 449 organic chemistry reactions. We have shown that range-separated hybrid functionals perform better than the global hybrids for BH9 barrier heights and reaction energies. Except for the PBE-based range-separated nonempirical double hybrids, range separation of the exchange term helps improve the performance for barrier heights and reaction energies. The 16-parameter Berkeley double hybrid, ωB97M(2), performs remarkably well for both properties. However, our minimally empirical range-separated double hybrid functionals offer marginally better accuracy than ωB97M(2) for BH9 barrier heights and reaction energies.
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Affiliation(s)
- Golokesh Santra
- Department of Molecular Chemistry
and Materials Science, Weizmann Institute
of Science, 7610001 Reḥovot, Israel
| | - Rivka Calinsky
- Department of Molecular Chemistry
and Materials Science, Weizmann Institute
of Science, 7610001 Reḥovot, Israel
| | - Jan M. L. Martin
- Department of Molecular Chemistry
and Materials Science, Weizmann Institute
of Science, 7610001 Reḥovot, Israel
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10
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Messiad FA, Ammouchi N, Belhocine Y, Alhussain H, Ghoniem MG, Said RB, Ali FAM, Rahali S. In Search of Preferential Macrocyclic Hosts for Sulfur Mustard Sensing and Recognition: A Computational Investigation through the New Composite Method r 2SCAN-3c of the Key Factors Influencing the Host-Guest Interactions. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:2517. [PMID: 35893486 PMCID: PMC9329917 DOI: 10.3390/nano12152517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 07/18/2022] [Accepted: 07/19/2022] [Indexed: 11/29/2022]
Abstract
Sulfur mustard (SM) is a harmful warfare agent that poses a serious threat to human health and the environment. Thus, the design of porous materials capable of sensing and/or capturing SM is of utmost importance. In this paper, the interactions of SM and its derivatives with ethylpillar[5]arene (EtP[5]) and the interactions between SM and a variety of host macrocycles were investigated through molecular docking calculations and non-covalent interaction (NCI) analysis. The electronic quantum parameters were computed to assess the chemical sensing properties of the studied hosts toward SM. It was found that dispersion interactions contributed significantly to the overall complexation energy, leading to the stabilization of the investigated systems. DFT energy computations showed that SM was more efficiently complexed with DCMP[5] than the other hosts studied here. Furthermore, the studied macrocyclic containers could be used as host-based chemical sensors or receptors for SM. These findings could motivate experimenters to design efficient sensing and capturing materials for the detection of SM and its derivatives.
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Affiliation(s)
- Fatine Ali Messiad
- Department of Process Engineering, Faculty of Technology, Université 20 Août 1955, El Hadaik Road, Skikda 21000, Algeria;
- LRPCSI-Laboratoire de Recherche sur la Physico-Chimie des Surfaces et Interfaces, Université 20 Août 1955, Skikda 21000, Algeria
| | - Nesrine Ammouchi
- LRPCSI-Laboratoire de Recherche sur la Physico-Chimie des Surfaces et Interfaces, Université 20 Août 1955, Skikda 21000, Algeria
- Département de Technologie, Faculté de Technologie, Université 20 Août 1955, B.P. 26, Route d’El Hadaiek, Skikda 21000, Algeria
| | - Youghourta Belhocine
- Department of Process Engineering, Faculty of Technology, Université 20 Août 1955, El Hadaik Road, Skikda 21000, Algeria;
| | - Hanan Alhussain
- Department of Chemistry, College of Science, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia; (H.A.); (M.G.G.); (F.A.M.A.)
| | - Monira Galal Ghoniem
- Department of Chemistry, College of Science, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia; (H.A.); (M.G.G.); (F.A.M.A.)
| | - Ridha Ben Said
- Department of Chemistry, College of Science and Arts, Qassim University, P.O. 53, Ar Rass 51921, Saudi Arabia;
- Laboratoire de Caractérisations, Applications et Modélisations des Matériaux, Faculté des Sciences de Tunis, Université Tunis El Manar, Tunis 2092, Tunisia
| | - Fatima Adam Mohamed Ali
- Department of Chemistry, College of Science, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia; (H.A.); (M.G.G.); (F.A.M.A.)
| | - Seyfeddine Rahali
- Department of Chemistry, College of Science and Arts, Qassim University, P.O. 53, Ar Rass 51921, Saudi Arabia;
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11
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Bursch M, Neugebauer H, Ehlert S, Grimme S. Dispersion corrected r 2SCAN based global hybrid functionals: r 2SCANh, r 2SCAN0, and r 2SCAN50. J Chem Phys 2022; 156:134105. [PMID: 35395897 DOI: 10.1063/5.0086040] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
The regularized and restored semilocal meta-generalized gradient approximation (meta-GGA) exchange-correlation functional r2SCAN [Furness et al., J. Phys. Chem. Lett. 11, 8208-8215 (2020)] is used to create three global hybrid functionals with varying admixtures of Hartree-Fock "exact" exchange (HFX). The resulting functionals r2SCANh (10% HFX), r2SCAN0 (25% HFX), and r2SCAN50 (50% HFX) are combined with the semi-classical D4 London dispersion correction. The new functionals are assessed for the calculation of molecular geometries, main-group, and metalorganic thermochemistry at 26 comprehensive benchmark sets. These include the extensive GMTKN55 database, ROST61, and IONPI19 sets. It is shown that a moderate admixture of HFX leads to relative improvements of the mean absolute deviations for thermochemistry of 11% (r2SCANh-D4), 16% (r2SCAN0-D4), and 1% (r2SCAN50-D4) compared to the parental semi-local meta-GGA. For organometallic reaction energies and barriers, r2SCAN0-D4 yields an even larger mean improvement of 35%. The computation of structural parameters (geometry optimization) does not systematically profit from the HFX admixture. Overall, the best variant r2SCAN0-D4 performs well for both main-group and organometallic thermochemistry and is better or on par with well-established global hybrid functionals, such as PW6B95-D4 or PBE0-D4. Regarding systems prone to self-interaction errors (SIE4x4), r2SCAN0-D4 shows reasonable performance, reaching the quality of the range-separated ωB97X-V functional. Accordingly, r2SCAN0-D4 in combination with a sufficiently converged basis set [def2-QZVP(P)] represents a robust and reliable choice for general use in the calculation of thermochemical properties of both main-group and organometallic chemistry.
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Affiliation(s)
- Markus Bursch
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Hagen Neugebauer
- Mulliken Center for Theoretical Chemistry, Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany
| | - Sebastian Ehlert
- Mulliken Center for Theoretical Chemistry, Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany
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