1
|
Rajan H, R PC, Nair SV, Pillai RR, Ameen R. Tailoring functionalized 2,3-diaza-1,3-butadienes for high-energy and insensitive applications. J Mol Graph Model 2025; 138:109024. [PMID: 40174490 DOI: 10.1016/j.jmgm.2025.109024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2024] [Revised: 03/14/2025] [Accepted: 03/17/2025] [Indexed: 04/04/2025]
Abstract
The heat of formation (HOF), detonation performance, electronic properties, thermal stability, impact energy and explosive power of a series of highly functionalized 2,3-diaza-1,3-butadienes were studied using density functional theory. HOF values of all the designed compounds were positive. Among the 100 compounds, more than 50 % exhibited a density equal to or greater than 1.9 g cm-3. There was close agreement in the calculated value of density, detonation performance and impact energy of traditional explosive RDX, HMX and CL-20 with the experimental value. The predicted values of detonation velocity and pressure indicated that about 45 compounds possessed values higher than that of 1,3,5-trinitro-1,3,5-triazacyclohexane (RDX), among which 20 compounds had higher impact energy than HMX. Five compounds were identified as potential front-runners with superior detonation performance greater than CL-20, together with impact energy higher than HMX. Thus compounds with improved properties were designed by the adoption of strategies that involved the incorporation of diverse explosophores and nitrogen atoms in the ring and the framework. Our study proves that this work holds immense potential in the development of high-energetic density materials with promising properties.
Collapse
Affiliation(s)
- Hridya Rajan
- University of Kerala, Department of Physics, University College, Thiruvananthapuram, 695034, Kerala, India.
| | - Prakash Chandran R
- Department of Chemistry, M.M.N.S.S. College, Kottiyam, Kollam, 691571, Kerala, India
| | - Sobha Vijayan Nair
- Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Amritapuri, Kollam, 690525, Kerala, India
| | - Renjith Raveendran Pillai
- University of Kerala, Department of Physics, University College, Thiruvananthapuram, 695034, Kerala, India; Department of Physics, Government College, Kasaragod, 671123, Kerala, India.
| | - Rahana Ameen
- Department of Chemistry, Payyanur College, Edat, Payyanur, Kannur, 670327, Kerala, India
| |
Collapse
|
2
|
Jefferson de Arruda H, Almeida Ferreira L, Leonel S Sousa G, Terra Maia Y, Vitório F, Cirne-Santos CC, de Souza Barros C, Ribeiro Batista R, Christina N P Paixão I, Pereira Guedes G, Eugen Kümmerle A, Porto Neves A. Coumarin-imidazopyridine hybrids and their first-in-class Zn II metal complexes as potent dual entry and replication inhibitors of Zika viral infection. Bioorg Chem 2024; 153:107889. [PMID: 39427631 DOI: 10.1016/j.bioorg.2024.107889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Revised: 10/04/2024] [Accepted: 10/12/2024] [Indexed: 10/22/2024]
Abstract
In this study, we synthesized and characterized a series of coumarin-imidazopyridine hybrid ligands (HL1-HL4) and their corresponding Zn(II) complexes (C1-C4). The ligands were synthesized via a two-step process in 56-90 % yields. The resulting ligands, were utilized to form Zn(II) complexes, characterized by conductivity measurements, HRMS, IR, 1H NMR spectroscopy and X-ray diffractions. Biological evaluations revealed that these compounds exhibited potent antiviral activity against Zika virus (ZIKV), with EC50 values ranging from 0.55 to 4.8 µM and SI of up to 1490. Notably, the complexes (the first-in-class Zn(II) anti-ZIKV complexes) generally displayed enhanced activity compared to their respective ligands, with some compounds outperforming the reference antiviral, ribavirin. The Time of Addition assay suggested that while some compounds interfere with both viral entry (with a virucidal component) and replication phases, other only acted in replication phases. These results together with molecular modeling studies on ZIKV Envelope protein and ZIKV NS2B-NS3 offered insights for their mode of actions and further optimizations.
Collapse
Affiliation(s)
- Henrique Jefferson de Arruda
- Instituto de Química, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, RJ, Brasil
| | - Larissa Almeida Ferreira
- Instituto de Química, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, RJ, Brasil
| | - Gleyton Leonel S Sousa
- Instituto de Química, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, RJ, Brasil
| | - Yuri Terra Maia
- Instituto de Química, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, RJ, Brasil
| | - Felipe Vitório
- Instituto de Química, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, RJ, Brasil
| | | | | | | | | | | | - Arthur Eugen Kümmerle
- Instituto de Química, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, RJ, Brasil.
| | - Amanda Porto Neves
- Instituto de Química, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, RJ, Brasil.
| |
Collapse
|
3
|
Alghrably M, Tammam MA, Koutsaviti A, Roussis V, Lopez X, Bennici G, Sharfalddin A, Almahasheer H, Duarte CM, Emwas AH, Ioannou E, Jaremko M. Metabolites from Marine Macroorganisms of the Red Sea Acting as Promoters or Inhibitors of Amylin Aggregation. Biomolecules 2024; 14:951. [PMID: 39199339 PMCID: PMC11352613 DOI: 10.3390/biom14080951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2024] [Revised: 07/18/2024] [Accepted: 07/19/2024] [Indexed: 09/01/2024] Open
Abstract
Amylin is part of the endocrine pancreatic system that contributes to glycemic control, regulating blood glucose levels. However, human amylin has a high tendency to aggregate, forming isolated amylin deposits that are observed in patients with type 2 diabetes mellitus. In search of new inhibitors of amylin aggregation, we undertook the chemical analyses of five marine macroorganisms encountered in high populations in the Red Sea and selected a panel of 10 metabolites belonging to different chemical classes to evaluate their ability to inhibit the formation of amyloid deposits in the human amylin peptide. The thioflavin T assay was used to examine the kinetics of amyloid aggregation, and atomic force microscopy was employed to conduct a thorough morphological examination of the formed fibrils. The potential ability of these compounds to interact with the backbone of peptides and compete with β-sheet formation was analyzed by quantum calculations, and the interactions with the amylin peptide were computationally examined using molecular docking. Despite their structural similarity, it could be observed that the hydrophobic and hydrogen bond interactions of pyrrolidinones 9 and 10 with the protein sheets result in one case in a stable aggregation, while in the other, they cause distortion from aggregation.
Collapse
Affiliation(s)
- Mawadda Alghrably
- Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (M.A.); (G.B.)
| | - Mohamed A. Tammam
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, School of Health Sciences, National and Kapodistrian University of Athens, 15771 Athens, Greece; (M.A.T.); (A.K.); (V.R.)
- Department of Biochemistry, Faculty of Agriculture, Fayoum University, Fayoum 63514, Egypt
| | - Aikaterini Koutsaviti
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, School of Health Sciences, National and Kapodistrian University of Athens, 15771 Athens, Greece; (M.A.T.); (A.K.); (V.R.)
| | - Vassilios Roussis
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, School of Health Sciences, National and Kapodistrian University of Athens, 15771 Athens, Greece; (M.A.T.); (A.K.); (V.R.)
| | - Xabier Lopez
- Polimero eta Material Aurreratuak: Fisika, Kimika eta Teknologia, Kimika Fakultatea, UPV/EHU & Donostia International Physics Center (DIPC), PK 1072, 20018 Donostia-San Sebastian, Euskadi, Spain;
| | - Giulia Bennici
- Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (M.A.); (G.B.)
| | - Abeer Sharfalddin
- Department of Chemistry, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia;
| | - Hanan Almahasheer
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), Dammam 31441-1982, Saudi Arabia;
| | - Carlos M. Duarte
- Red Sea Research Center, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia;
| | - Abdul-Hamid Emwas
- Core Lab of NMR, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia;
| | - Efstathia Ioannou
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, School of Health Sciences, National and Kapodistrian University of Athens, 15771 Athens, Greece; (M.A.T.); (A.K.); (V.R.)
| | - Mariusz Jaremko
- Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (M.A.); (G.B.)
| |
Collapse
|
4
|
Selaković S, Rodić MV, Novaković I, Matić IZ, Stanojković T, Pirković A, Živković L, Spremo-Potparević B, Milčić M, Medaković V, Dimiza F, Psomas G, Anđelković K, Šumar-Ristović M. Cu(II) complexes with a salicylaldehyde derivative and α-diimines as co-ligands: synthesis, characterization, biological activity. Experimental and theoretical approach. Dalton Trans 2024; 53:2770-2788. [PMID: 38226867 DOI: 10.1039/d3dt03862a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2024]
Abstract
Copper(II) complexes with an α-diimine show a wide variety of biological activities, such as antibacterial, antifungal, antioxidant and anticancer. In this work, we synthesized and structurally characterized two novel Cu(II) complexes with methyl 3-formyl-4-hydroxybenzoate (HL) and α-diimines: 2,2'-bipyridine (bipy) and 1,10-phenanthroline (phen). Crystal structure analysis shows that the formulas of the compounds are [Cu(bipy)(L)(BF4)] (1) and [Cu(phen)(L)(H2O)](BF4)·H2O (2), with BF4- as a ligand in complex 1, which is rarely coordinated to metals. Both complexes have a square pyramidal geometry, while DFT calculations showed that the most stable structures of complexes 1 and 2 in a water/DMSO mixture are square-planar derivatives [Cu(bipy)(L)]+ and [Cu(phen)(L)]+. The antibacterial activity of compounds was evaluated in vitro on four Gram-negative and four Gram-positive bacterial strains. Complex 2 showed greater antibacterial activity towards all bacterial strains comparable to the control compound Amikacin. Complex 2 exerted a strong cytotoxic effect against the tested cancer cell lines (IC50 values ranging from 0.32 to 0.44 μM). Both complexes caused apoptotic cell death in HeLa cells and a noticeable in vitro antiangiogenic effect. In the concentration range of 5 to 100 μM, the complexes showed the absence of a genotoxic effect and displayed a protective effect against oxidative DNA damage induced by H2O2 in human peripheral blood cells. The interaction between the compounds and calf-thymus DNA was evaluated by diverse techniques suggesting a tight binding, which was also confirmed by molecular docking. In addition, it was found that the complexes bind tightly and reversibly to bovine and human serum albumin.
Collapse
Affiliation(s)
- Snežana Selaković
- University of Belgrade - Faculty of Pharmacy, Department of General and Inorganic Chemistry, 11000 Belgrade, Serbia
| | - Marko V Rodić
- University of Novi Sad, Faculty of Sciences, Department of Chemistry, Biochemistry and Environmental Protection, 21102 Novi Sad, Serbia
| | - Irena Novaković
- University of Belgrade, Institute of Chemistry, Technology and Metallurgy, Department of Chemistry, 11000 Belgrade, Serbia
| | - Ivana Z Matić
- Institute of Oncology and Radiology of Serbia, Belgrade, Serbia
| | | | - Andrea Pirković
- Institute for the Application of Nuclear Energy-INEP, Department for Biology of Reproduction, Serbia
| | - Lada Živković
- University of Belgrade - Faculty of Pharmacy, Department of Pathobiology, 11000 Belgrade, Serbia
| | | | - Miloš Milčić
- University of Belgrade - Faculty of Chemistry, 11000 Belgrade, Serbia.
| | - Vesna Medaković
- University of Belgrade - Faculty of Chemistry, 11000 Belgrade, Serbia.
| | - Filitsa Dimiza
- Laboratory of Inorganic Chemistry, Department of Chemistry, Aristotle University of Thessaloniki, Thessaloniki GR-54124, Greece
| | - George Psomas
- Laboratory of Inorganic Chemistry, Department of Chemistry, Aristotle University of Thessaloniki, Thessaloniki GR-54124, Greece
| | | | | |
Collapse
|