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Power C, Carabott MJ, Norbury L, Rough K, Nowak BF, Bott NJ. Rapid point-of-need blood fluke detection in Southern Bluefin Tuna samples using recombinase polymerase amplification coupled with lateral flow test (RPA-LF). Vet Parasitol 2025; 336:110457. [PMID: 40147098 DOI: 10.1016/j.vetpar.2025.110457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Revised: 03/11/2025] [Accepted: 03/19/2025] [Indexed: 03/29/2025]
Abstract
Aporocotylid blood flukes Cardicola forsteri and C. orientalis are considered one of the most significant health concerns for Southern Bluefin Tuna (SBT) Thunnus maccoyii ranched in Australia. There is a need for rapid point-of-need diagnostics to detect Cardicola spp. in SBT to allow the industry to make timely management decisions. Recombinase polymerase amplification (RPA) is an isothermal technique which operates at constant low temperature (25-42˚C), and when coupled with a lateral flow (LF) strip, makes an ideal diagnostic tool for rapid, specific, and sensitive identification of pathogens in field applications. RPA-LF assays were designed and validated for detection of C. forsteri and C. orientalis. For each assay, no cross-species amplification was seen and detection as low as 30-50 gene copy equivalents was achieved. Reactions can be completed in 10 minutes. Similar specificity and sensitivity were demonstrated for SBT samples when compared to qPCR analysis, and use of equipment-free incubation using body heat outside of laboratory settings was demonstrated. By developing rapid, ready-to-use diagnostics, the SBT industry can identify risks relating to blood flukes far quicker than is currently possible.
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Affiliation(s)
- Cecilia Power
- School of Science, STEM College, RMIT University, Bundoora, Victoria 3083, Australia
| | - Melissa J Carabott
- School of Science, STEM College, RMIT University, Bundoora, Victoria 3083, Australia
| | - Luke Norbury
- School of Science, STEM College, RMIT University, Bundoora, Victoria 3083, Australia
| | - Kirsten Rough
- Australian Southern Bluefin Tuna Industry Association, South Quay Blvd, Port Lincoln, SA 5606, Australia
| | - Barbara F Nowak
- School of Science, STEM College, RMIT University, Bundoora, Victoria 3083, Australia; Institute for Marine and Antarctic Studies - Launceston, University of Tasmania, Private Bag 1370, Launceston, Tasmania 7250, Australia
| | - Nathan J Bott
- School of Science, STEM College, RMIT University, Bundoora, Victoria 3083, Australia.
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Widdicombe M, Carabott M, Power C, Wanicek E, Evans DL, Ramsland PA, Nowak BF, Bott NJ. Preliminary evidence of a life stage specific antibody response to Cardicola spp. (Trematoda: Aporocotylidae) in ranched Southern bluefin tuna, Thunnus maccoyii. FISH & SHELLFISH IMMUNOLOGY 2025; 161:110259. [PMID: 40054709 DOI: 10.1016/j.fsi.2025.110259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Revised: 03/02/2025] [Accepted: 03/04/2025] [Indexed: 04/18/2025]
Abstract
Cardicola forsteri (Trematoda: Aporocotylidae) is a significant pathogen for the Australian Southern bluefin tuna (SBT, Thunnus maccoyii) aquaculture industry infecting up to 100 % of fish. This study investigated the relationship between the SBT C. forsteri antibody response and Cardicola spp. infection during an extended ranching period. SBT were sampled at 11 time points during commercial harvest in Port Lincoln, South Australia ranging from 13 to 40 weeks post treatment (PT) with praziquantel. C. forsteri specific serum antibodies were measured using an enzyme linked immunosorbent assay (ELISA) and Cardicola spp. infection was quantified using adult fluke counts from SBT heart and quantitative polymerase chain reaction (qPCR) of C. forsteri or C. orientalis ITS-2 rDNA in SBT gills. C. forsteri specific IgM was significantly higher in SBT positive for C. forsteri ITS-2 rDNA compared to SBT that were negative. C. forsteri specific antibody levels remained elevated throughout the study duration and were significantly higher at week 30 and week 40 PT than week 17 PT. A significant negative correlation between adult fluke infection intensity and C. forsteri specific IgM was identified at week 25 PT and a significant positive correlation was identified at week 40 for C. forsteri ITS-2 rDNA infection intensity and C. forsteri specific IgM. A positive correlation was identified between C. forsteri specific IgM and C. forsteri ITS-2 rDNA infection intensity from 4 to 5 weeks earlier. Cardicola spp. infection intensity peaked at 25 weeks PT before significantly decreasing for the remainder of the study despite 100 % infection prevalence of C. forsteri ITS-2 rDNA from SBT gills.
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Affiliation(s)
- Maree Widdicombe
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia
| | - Melissa Carabott
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia
| | - Cecilia Power
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia
| | - Emma Wanicek
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia
| | - Daryl L Evans
- Marnikol Fisheries Pty Ltd, Port Lincoln, South Australia, 5606, Australia
| | - Paul A Ramsland
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia; Department of Immunology, Monash University, Melbourne, Victoria, 3004, Australia; Department of Surgery, Austin Health, University of Melbourne, Heidelberg, Victoria, 3084, Australia
| | - Barbara F Nowak
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia; Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, 7004, Australia
| | - Nathan J Bott
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia.
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Cribb TH, Barton DP, Blair D, Bott NJ, Bray RA, Corner RD, Cutmore SC, De Silva MLI, Duong B, Faltýnková A, Gonchar A, Hechinger RF, Herrmann KK, Huston DC, Johnson PTJ, Kremnev G, Kuchta R, Louvard C, Luus-Powell WJ, Martin SB, Miller TL, Pérez-Ponce de León G, Smit NJ, Tkach VV, Truter M, Waki T, Vermaak A, Wee NQX, Yong RQY, Achatz TJ. Challenges in the recognition of trematode species: Consideration of hypotheses in an inexact science. J Helminthol 2025; 99:e54. [PMID: 40260497 DOI: 10.1017/s0022149x25000367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/23/2025]
Abstract
The description and delineation of trematode species is a major ongoing task. Across the field there has been, and currently still is, great variation in the standard of this work and in the sophistication of the proposal of taxonomic hypotheses. Although most species are relatively unambiguously distinct from their congeners, many are either morphologically very similar, including the major and rapidly growing component of cryptic species, or are highly variable morphologically despite little to no molecular variation for standard DNA markers. Here we review challenges in species delineation in the context provided to us by the historical literature, and the use of morphological, geographical, host, and molecular data. We observe that there are potential challenges associated with all these information sources. As a result, we encourage careful proposal of taxonomic hypotheses with consideration for underlying species concepts and frank acknowledgement of weaknesses or conflict in the data. It seems clear that there is no single source of data that provides a wholly reliable answer to our taxonomic challenges but that nuanced consideration of information from multiple sources (the 'integrated approach') provides the best possibility of developing hypotheses that will stand the test of time.
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Affiliation(s)
- T H Cribb
- Queensland Museum, Biodiversity and Geosciences Program, South Brisbane, Queensland4101, Australia
| | - D P Barton
- School of Agricultural, Environmental and Veterinary Sciences, Charles Sturt University, Wagga Wagga, New South Wales2658, Australia
| | - D Blair
- College of Science and Engineering, James Cook University, Australia
| | - N J Bott
- School of Science, RMIT University, PO Box 71, BundooraVIC 3083
| | - R A Bray
- Department of Life Sciences, Natural History Museum, Cromwell Road, LondonSW7 5BD, UK
| | - R D Corner
- Department of Primary Industries, Ecosciences Precinct, Dutton Park, Queensland4102, Australia
| | - S C Cutmore
- Queensland Museum, Biodiversity and Geosciences Program, South Brisbane, Queensland4101, Australia
| | - M L I De Silva
- Centre for Sustainable Aquatic Ecosystems, Harry Butler Institute, Murdoch University, Western Australia
| | - B Duong
- School of the Environment, The University of Queensland, 4072Australia
| | - A Faltýnková
- Department of Forest Ecology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemedelská 3, Brno, 613 00, Czech Republic
| | - A Gonchar
- Department of Invertebrate Zoology, St Petersburg University, Universitetskaya emb. 7-9, Saint Petersburg199034, Russia
- Laboratory of Parasitic Worms and Protists, Zoological Institute of the Russian Academy of Sciences, Universitetskaya emb. 1, Saint Petersburg199034, Russia
| | - R F Hechinger
- Scripps Insitution of Oceanography, University of California San Diego, La Jolla, California, USA
| | - K K Herrmann
- Tarleton State University, Stephenville, Texas, USA
| | - D C Huston
- Australian National Insect Collection, National Research Collections Australia, CSIRO, PO Box 1700, Canberra, ACT2601, Australia
| | - P T J Johnson
- Ecology and Evolutionary Biology, University of Colorado, Boulder, CO80309, USA
| | - G Kremnev
- Laboratory of Parasitic Worms and Protists, Zoological Institute of the Russian Academy of Sciences, Universitetskaya emb. 1, Saint Petersburg199034, Russia
| | - R Kuchta
- Institute of Parasitology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05Ceské Budejovice, Czech Republic
| | - C Louvard
- Water Research Group, Unit for Environmental Science and Management, North-West University - Potchefstroom campus, 11 Hoffman St, Potchefstroom 2531, North West, South Africa
| | - W J Luus-Powell
- DSI-NRF SARChI Chair (Ecosystem Health), Department of Biodiversity, University of Limpopo, 0727, South Africa
| | - S B Martin
- Centre for Sustainable Aquatic Ecosystems, Harry Butler Institute, Murdoch University, 90 South Street, Murdoch, 6150, Western Australia, Australia
| | - T L Miller
- Queensland Museum, Biodiversity and Geosciences Program, South Brisbane, Queensland4101, Australia
| | - G Pérez-Ponce de León
- Escuela Nacional de Estudios Superiores Unidad Mérida, Universidad Nacional Autónoma de México, Mérida, Yucatán, C.P. 97357, Mexico
| | - N J Smit
- Water Research Group, Unit for Environmental Science and Management, North-West University - Potchefstroom campus, 11 Hoffman St, Potchefstroom 2531, North West, South Africa
| | - V V Tkach
- Department of Biology, University of North Dakota, Grand Forks, North Dakota, USA
| | - M Truter
- Water Research Group, Unit for Environmental Science and Management, North-West University - Potchefstroom campus, 11 Hoffman St, Potchefstroom 2531, North West, South Africa
| | - T Waki
- Faculty of Science, Toho University, 2-2-1 Miyama, Funabashi, Chiba274-8510, Japan
| | - A Vermaak
- Water Research Group, Unit for Environmental Science and Management, North-West University - Potchefstroom campus, 11 Hoffman St, Potchefstroom 2531, North West, South Africa
| | - N Q-X Wee
- Queensland Museum, Biodiversity and Geosciences Program, South Brisbane, Queensland4101, Australia
| | - R Q-Y Yong
- Water Research Group, Unit for Environmental Science and Management, North-West University - Potchefstroom campus, 11 Hoffman St, Potchefstroom 2531, North West, South Africa
| | - T J Achatz
- Department of Natural Sciences, Middle Georgia State University, Macon, Georgia, USA
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Widdicombe M, Coff L, Nowak BF, Ramsland PA, Bott NJ. Understanding the host response of farmed fish to blood flukes (Trematoda: Aporocotylidae) for developing new treatment strategies. FISH & SHELLFISH IMMUNOLOGY 2024; 149:109613. [PMID: 38710341 DOI: 10.1016/j.fsi.2024.109613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/29/2024] [Accepted: 05/03/2024] [Indexed: 05/08/2024]
Abstract
Aporocotylids (Trematoda: Digenea), also known as fish blood flukes infect the circulatory system of fish leading to serious health problems and mortality. Aporocotylids are a particular concern for farmed fish as infection intensity can increase within the farming environment and lead to mortalities. In the context of managing these infections, one of the most crucial aspects to consider is the host response of the infected fish against these blood flukes. Understanding the response is essential to improving current treatment strategies that are largely based on the use of anthelmintic praziquantel to manage infections in aquaculture. This review focuses on the current knowledge of farmed fish host responses against the different life stages of aporocotylids. New treatment strategies that are able to provide protection against reinfections should be a long-term goal and is not possible without understanding the fish response to infection and the interactions between host and parasite.
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Affiliation(s)
- Maree Widdicombe
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia
| | - Lachlan Coff
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia; Australian Centre for Disease Preparedness, CSIRO, East Geelong, Victoria, 3219, Australia
| | - Barbara F Nowak
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia; Institute for Marine and Antarctic Studies, University of Tasmania, Locked Bag 1370, Launceston, Tasmania, 7250, Australia
| | - Paul A Ramsland
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia; Department of Immunology, Monash University, Melbourne, Victoria, 3004. Australia; Department of Surgery, Austin Health, University of Melbourne, Heidelberg, Victoria, 3084, Australia
| | - Nathan J Bott
- School of Science, STEM College, RMIT University, Bundoora, Victoria, 3083, Australia.
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Horák P, Bulantová J, Mikeš L. Other Schistosomatoidea and Diplostomoidea. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2024; 1454:107-155. [PMID: 39008265 DOI: 10.1007/978-3-031-60121-7_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Trematodes of the order Diplostomida are well known as serious pathogens of man, and both farm and wild animals; members of the genus Schistosoma (Schistosomatidae) are responsible for human schistosomosis (schistosomiasis) affecting more than 200 million people in tropical and subtropical countries, and infections of mammals and birds by animal schistosomes are of great veterinary importance. The order Diplostomida is also rich in species parasitizing other major taxa of vertebrates. The "Aporocotylidae" sensu lato are pathogenic in fish, "Spirorchiidae" sensu lato in reptiles. All these flukes have two-host life cycles, with asexually reproducing larvae usually in mollusks and occasionally in annelids, and adults usually live in the blood vessels of their vertebrate hosts. Pathology is frequently associated with inflammatory reactions to eggs trapped in various tissues/organs. On the other hand, the representatives of Diplostomidae and Strigeidae have three- or four-host life cycles in which vertebrates often serve not only as definitive but also as intermediate or paratenic hosts. Pathology is usually associated with migration of metacercariae and mesocercariae within the host tissues. The impact of these trematode infections on both farm and wild animals may be significant.
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Affiliation(s)
- Petr Horák
- Department of Parasitology, Faculty of Science, Charles University, Prague, Czech Republic.
| | - Jana Bulantová
- Department of Parasitology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Libor Mikeš
- Department of Parasitology, Faculty of Science, Charles University, Prague, Czech Republic
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Carabott MJ, Power C, Widdicombe M, Rough K, Nowak BF, Bott NJ. Dynamics of Cardicola spp. Infection in Ranched Southern Bluefin Tuna: First Observation of C. orientalis at Transfer. Pathogens 2023; 12:1443. [PMID: 38133326 PMCID: PMC10747332 DOI: 10.3390/pathogens12121443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 11/28/2023] [Accepted: 12/11/2023] [Indexed: 12/23/2023] Open
Abstract
Aporocotylid blood flukes Cardicola forsteri and C. orientalis are an ongoing health concern for the Southern Bluefin Tuna (Thunnus maccoyii, SBT) industry, where infections can lead to morbidity and mortality in ranched SBT populations. This study compared blood fluke infection in SBT from two companies during the 2021 ranching season. Both companies administered the same dosage of praziquantel approximately 5 weeks after transfer, feeding with frozen baitfish daily; the only difference in the company's practices was that the pontoons were located 2.5 km apart. Infection severity was measured as prevalence and intensity by quantifying adult C. forsteri in SBT heart and copy numbers of C. forsteri and C. orientalis ITS-2 DNA in SBT heart and gills. Data from the 2018 and 2019 harvests of SBT were used to make comparisons with 2021 harvest data. Cardicola orientalis was detected at transfer and no longer detected after treatment with praziquantel. Cardicola spp. were present in 83% of sampled SBT in 2021. Both companies demonstrated similar patterns of infection, and Company A had higher prevalence and intensity of Cardicola spp. infection. Based on C. forsteri ITS-2 DNA, infection intensity at harvest was significantly greater for both companies in 2021 when compared to 2018 and 2019. Continued monitoring of Cardicola spp. in SBT and improvements in diagnostics contribute to our understanding of Cardicola spp. epizootiology and the detection of changes in treatment efficacy.
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Affiliation(s)
- Melissa J. Carabott
- School of Science, RMIT University, Melbourne, VIC 3083, Australia; (M.J.C.); (C.P.); (M.W.); (B.F.N.)
| | - Cecilia Power
- School of Science, RMIT University, Melbourne, VIC 3083, Australia; (M.J.C.); (C.P.); (M.W.); (B.F.N.)
| | - Maree Widdicombe
- School of Science, RMIT University, Melbourne, VIC 3083, Australia; (M.J.C.); (C.P.); (M.W.); (B.F.N.)
| | - Kirsten Rough
- Australian Southern Bluefin Tuna Industry Association, South Quay Blvd, Port Lincoln, SA 5606, Australia;
| | - Barbara F. Nowak
- School of Science, RMIT University, Melbourne, VIC 3083, Australia; (M.J.C.); (C.P.); (M.W.); (B.F.N.)
| | - Nathan J. Bott
- School of Science, RMIT University, Melbourne, VIC 3083, Australia; (M.J.C.); (C.P.); (M.W.); (B.F.N.)
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Power C, Carabott M, Widdicombe M, Coff L, Rough K, Nowak B, Bott NJ. Effects of company and season on blood fluke ( Cardicola spp.) infection in ranched Southern Bluefin Tuna: preliminary evidence infection has a negative effect on fish growth. PeerJ 2023; 11:e15763. [PMID: 37520261 PMCID: PMC10377432 DOI: 10.7717/peerj.15763] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 06/27/2023] [Indexed: 08/01/2023] Open
Abstract
Aporocotylid blood flukes Cardicola forsteri and C. orientalis are an ongoing health concern for Southern Bluefin Tuna (SBT), Thunnus maccoyii, ranched in Australia. Therapeutic application of praziquantel (PZQ) has reduced SBT mortalities, however PZQ is not a residual treatment therefore reinfection can occur after the single treatment application. This study documents the epidemiology of Cardicola spp. infection in ranched SBT post treatment over three ranching seasons (2018, 2019 and 2021). Infection prevalence (percentage of SBT affected) and intensity (parasite load) was determined by adult fluke counts from heart, egg counts from gill filaments and the use of specific quantitative polymerase chain reaction (qPCR) for detection of C. forsteri and C. orientalis ITS-2 DNA in SBT hearts and gills. SBT Condition Index decreased as intensity of Cardicola spp. DNA in SBT gills increased, suggesting blood fluke infection had a negative effect on SBT growth (Spearman's r = -0.2426, d.f. = 138, p = 0.0041). Prevalence and intensity of infection indicated PZQ remained highly effective at controlling Cardicola spp. infection in ranched SBT, 10 years after PZQ administration began in this industry. Company A had the highest prevalence and intensity of Cardicola spp. infection in 2018, and Company G had the highest in 2019. No consistent pattern was seen in 2021. Overall, intensity of infection did not increase as ranching duration increased post treatment. Results from this study improve our knowledge of the biology of blood flukes and helps the SBT industry to modify or design new blood fluke management strategies to reduce health risks and improve performance of SBT.
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Affiliation(s)
- Cecilia Power
- School of Science, Royal Melbourne Institute of Technology, Melbourne, Victoria, Australia
| | - Melissa Carabott
- School of Science, Royal Melbourne Institute of Technology, Melbourne, Victoria, Australia
| | - Maree Widdicombe
- School of Science, Royal Melbourne Institute of Technology, Melbourne, Victoria, Australia
| | - Lachlan Coff
- School of Science, Royal Melbourne Institute of Technology, Melbourne, Victoria, Australia
| | - Kirsten Rough
- Australian Southern Bluefin Tuna Industry Association, Port Lincoln, South Australia, Australia
| | - Barbara Nowak
- School of Science, Royal Melbourne Institute of Technology, Melbourne, Victoria, Australia
| | - Nathan J. Bott
- School of Science, Royal Melbourne Institute of Technology, Melbourne, Victoria, Australia
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A century of parasitology in fisheries and aquaculture. J Helminthol 2023; 97:e4. [PMID: 36631485 DOI: 10.1017/s0022149x22000797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Fish parasitological research associated with fisheries and aquaculture has expanded remarkably over the past century. The application of parasites as biological tags has been one of the fields in which fish parasitology has generated new insight into fish migration and stock assessments worldwide. It is a well-established discipline whose methodological issues are regularly reviewed and updated. Therefore, no concepts or case-studies will be repeated here; instead, we summarize some of the main recent findings and achievements of this methodology. These include the extension of its use in hosts other than bony fishes; the improvements in the selection of parasite tags; the recognition of the host traits affecting the use of parasite tags; and the increasingly recognized need for integrative, multidisciplinary studies combining parasites with classical methods and modern techniques, such as otolith microchemistry and genetics. Archaeological evidence points to the existence of parasitic problems associated with aquaculture activities more than a thousand years ago. However, the main surge of research within aquaculture parasitology occurred with the impressive development of aquaculture over the past century. Protozoan and metazoan parasites, causing disease in domesticated fish in confined environments, have attracted the interest of parasitologists and, due to their economic importance, funding was made available for basic and applied research. This has resulted in a profusion of basic knowledge about parasite biology, physiology, parasite-host interactions, life cycles and biochemistry. Due to the need for effective control methods, various solutions targeting host-parasite interactions (immune responses and host finding), genetics and pharmacological aspects have been in focus.
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Draft genome of the bluefin tuna blood fluke, Cardicola forsteri. PLoS One 2022; 17:e0276287. [PMID: 36240154 PMCID: PMC9565688 DOI: 10.1371/journal.pone.0276287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 10/03/2022] [Indexed: 11/12/2022] Open
Abstract
The blood fluke Cardicola forsteri (Trematoda: Aporocotylidae) is a pathogen of ranched bluefin tuna in Japan and Australia. Genomics of Cardicola spp. have thus far been limited to molecular phylogenetics of select gene sequences. In this study, sequencing of the C. forsteri genome was performed using Illumina short-read and Oxford Nanopore long-read technologies. The sequences were assembled de novo using a hybrid of short and long reads, which produced a high-quality contig-level assembly (N50 > 430 kb and L50 = 138). The assembly was also relatively complete and unfragmented, comprising 66% and 7.2% complete and fragmented metazoan Benchmarking Universal Single-Copy Orthologs (BUSCOs), respectively. A large portion (> 55%) of the genome was made up of intergenic repetitive elements, primarily long interspersed nuclear elements (LINEs), while protein-coding regions cover > 6%. Gene prediction identified 8,564 hypothetical polypeptides, > 77% of which are homologous to published sequences of other species. The identification of select putative proteins, including cathepsins, calpains, tetraspanins, and glycosyltransferases is discussed. This is the first genome assembly of any aporocotylid, a major step toward understanding of the biology of this family of fish blood flukes and their interactions within hosts.
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