Deciphering Molecular Mechanisms Involved in Salinity Tolerance in Guar (Cyamopsis tetragonoloba (L.) Taub.) Using Transcriptome Analyses

Influence of Soil Amendment Application on Growth and Yield of Hedysarum scoparium Fisch. et Mey and Avena sativa L. Under Saline Conditions in Dry-Land Regions

Globally, salt stress is one of the most significant abiotic stresses limiting crop production in dry-land regions. Nowadays, growing crops in dry-land regions under saline irrigation is the main focus. Soil amendment with organic materials has shown the potential to mitigate the adverse effects of salinity on plants. This study aimed to examine the ameliorative impact of soil amendment (manure + sandy, compost + sandy, clay + sandy and sandy soil) on the growth, yield, physiological, and biochemical attributes of Hedysarum scoparium Fisch. et Mey (HS) and Avena sativa L. (OT) under fresh and saline water irrigation in dry-land regions. The results showed that salt stress negatively affected both plant species' growth, physiological traits, yield, and chloride ions. In response to saline irrigation, plants of both species increased catalase (CAT) and ascorbate peroxidase (APX) activities as part of a self-defense mechanism to minimize damage. Salt stress also significantly raised levels of hydrogen peroxide (H2O2), malondialdehyde (MDA), and chloride ions (Cl). However, soil amendment treatments like manure + sandy and compost + sandy soil countered the negative effects of saline irrigation, significantly improving plant growth and yield compared with sandy soil. Thus, organic soil amendment is a promising strategy for sustainable crop production under saline irrigation in dry-land regions. This study provides valuable insights into enhancing agricultural production by fostering resilient halophytes and salt-tolerant plant species in challenging environments.

Differential responses of two local and commercial guar cultivars for nutrient uptake and yield components under drought and biochar application

Drought is one of the abiotic stresses that can reduce crop yields. It has a major impact on crop yield reduction. For crops under stress, organic modifiers such as biochar can be useful. Guar (Cyamopsis tetragonoloba L.), an annual legume from the Fabaceae Family, is highly adaptable to arid and semi-arid regions, with many applications in various industries. Field experiments were carried out in a randomized complete block design with three replications using a split-split plots arrangement. The aim was to evaluate the influence of irrigation levels (Ir1 = 10, Ir2 = 14, and Ir3 = 17 days irrigation cycle) and biochar (B1 = 0, B2 = 5, and B3 = 10 tons ha-1) application on physiological traits [(chlorophyll a and b, chlorophyll index (SPAD), relative leaf water content (RWC), electrolyte leakage (EL), canopy temperature, leaf area, water use efficiency (WUE)], morphological parameters (length and diameter of the stem, pod length, fresh weight of root and plant, root length), yield components (seed yield, number of branch plant-1, number of clusters plant-1, pod plant-1, seed pod-1, seed plant-1, 1000-seed weight, and gum contents), and leaf nutrient uptake (Ca, Mg, P, Na, and K) of two commercial and local cultivars (cv1 = RGC-936 and cv2 = Saravan) of the guar plant. It was observed that the Ir3 irrigation treatment produced the highest seed yield (1921.8 kg ha-1) in terms of water stress. However, the maximum pod plant-1 (75.5), seed plant-1 (454.2), seed yield (1871.1 kg ha-1), leaf area (861.8 mm2), SPAD (92.2), Mg (49.8 mg g-1), Na (43.3 mg g-1) and P (0.49 mg g-1) were observed in RGC-936. The results also revealed that biochar was more effective than cultivars in terms of morphological traits. While yield and yield components were affected by cultivar, irrigation at different levels also had a significant effect on functional traits, physiology, and morphology. The addition of biochar appeared to have a positive effect on water stress alleviation and guar growth and leaf nutrient uptake. According to Pearson's correlation analysis, plant weight and length, root weight and length, stem diameter, seed pod-1, branches plant-1, and 1000-seed weight are moderately correlated with seed yield, while pod plant-1 and seed plant-1 are strongly associated with seed yield. On the other hand, the pod length, branches plant-1, and gum content showed a positive but not significant relationship.

Strategies for combating plant salinity stress: the potential of plant growth-promoting microorganisms

Global climate change and the decreasing availability of high-quality water lead to an increase in the salinization of agricultural lands. This rising salinity represents a significant abiotic stressor that detrimentally influences plant physiology and gene expression. Consequently, critical processes such as seed germination, growth, development, and yield are adversely affected. Salinity severely impacts crop yields, given that many crop plants are sensitive to salt stress. Plant growth-promoting microorganisms (PGPMs) in the rhizosphere or the rhizoplane of plants are considered the "second genome" of plants as they contribute significantly to improving the plant growth and fitness of plants under normal conditions and when plants are under stress such as salinity. PGPMs are crucial in assisting plants to navigate the harsh conditions imposed by salt stress. By enhancing water and nutrient absorption, which is often hampered by high salinity, these microorganisms significantly improve plant resilience. They bolster the plant's defenses by increasing the production of osmoprotectants and antioxidants, mitigating salt-induced damage. Furthermore, PGPMs supply growth-promoting hormones like auxins and gibberellins and reduce levels of the stress hormone ethylene, fostering healthier plant growth. Importantly, they activate genes responsible for maintaining ion balance, a vital aspect of plant survival in saline environments. This review underscores the multifaceted roles of PGPMs in supporting plant life under salt stress, highlighting their value for agriculture in salt-affected areas and their potential impact on global food security.

Understanding the salt overly sensitive pathway in Prunus: Identification and characterization of NHX, CIPK, and CBL genes

Salinity is a major abiotic stress factor that can significantly impact crop growth, and productivity. In response to salt stress, the plant Salt Overly Sensitive (SOS) signaling pathway regulates the homeostasis of intracellular sodium ion concentration. The SOS1, SOS2, and SOS3 genes play critical roles in the SOS pathway, which belongs to the members of Na+/H+ exchanger (NHX), CBL-interacting protein kinase (CIPK), and calcineurin B-like (CBL) gene families, respectively. In this study, we performed genome-wide identifications and phylogenetic analyses of NHX, CIPK, and CBL genes in six Rosaceae species: Prunus persica, Prunus dulcis, Prunus mume, Prunus armeniaca, Pyrus ussuriensis × Pyrus communis, and Rosa chinensis. NHX, CIPK, and CBL genes of Arabidopsis thaliana were used as controls for phylogenetic analyses. Our analysis revealed the lineage-specific and adaptive evolutions of Rosaceae genes. Our observations indicated the existence of two primary classes of CIPK genes: those that are intron-rich and those that are intron-less. Intron-rich CIPKs in Rosaceae and Arabidopsis can be traced back to algae CIPKs and CIPKs found in early plants, suggesting that intron-less CIPKs evolved from their intron-rich counterparts. This study identified one gene for each member of the SOS signaling pathway in P. persica: PpSOS1, PpSOS2, and PpSOS3. Gene expression analyses indicated that all three genes of P. persica were expressed in roots and leaves. Yeast two-hybrid-based protein-protein interaction analyses revealed a direct interaction between PpSOS3 and PpSOS2; and between PpSOS2 and PpSOS1C-terminus region. Our findings indicate that the SOS signaling pathway is highly conserved in P. persica.

Growth and Performance of Guar (Cyamopsis tetragonoloba (L.) Taub.) Genotypes under Various Irrigation Regimes with and without Biogenic Silica Amendment in Arid Southwest US

Guar is a potential crop that can be grown as a forage or as a seed crop in arid to semi-arid regions due to its low water requirements and tolerance to heat. Optimizing irrigation water use is important for making alternative crops such as guar a sustainable option. Amendments such as biogenic silica, a sedimentary rock from a biogenic source such as fossils, may help plants tolerate water stress due to reduced irrigation. The objective of the current study was to evaluate seed yield and attribute components and agronomic and physiological parameters for four guar genotypes (Matador, Kinman, Lewis, and NMSU 15-G1) under five drip irrigation regimes (I₁-normal irrigation, I₂-no irrigation at 75% pod formation, I₃-no irrigation at 50% and 75% pod formation, I₄-terminate irrigation at flowering, and I₅-terminate irrigation at flowering + biogenic silica amendment) at Las Cruces in southern New Mexico, USA, from 2016 to 2018. On average, the I₁ irrigation regime produced the highest guar seed yield (2715 kg ha^-1) followed by I₅ (2469 kg ha^-1) from 2016 to 2018. As compared to the I₁ regime, the I₂ and I₃ regimes resulted in a 20.8% and 23.4% decline in guar seed yield, respectively, on average from 2016 to 2018. The results suggest that the addition of biogenic silica might help to improve guar seed yield under reduced irrigation conditions and can produce comparable yields with an average of 300 mm of irrigation during the growing season in the southern New Mexico region of the Southwest US.

10th Anniversary of Plants-Recent Advances and Further Perspectives

Published for the first time in 2012, Plants will celebrate its 10th anniversary [...].

Moderate Salinity Stress Increases the Seedling Biomass in Oilseed Rape (Brassica napus L.)

Oilseed rape (Brassica napus L.), an important oil crop of the world, suffers various abiotic stresses including salinity stress during the growth stage. While most of the previous studies paid attention to the adverse effects of high salinity stress on plant growth and development, as well as their underlying physiological and molecular mechanisms, less attention was paid to the effects of moderate or low salinity stress. In this study, we first tested the effects of different concentrations of NaCl solution on the seedling growth performance of two oilseed rape varieties (CH336, a semi-winter type, and Bruttor, a spring type) in pot cultures. We found that moderate salt concentrations (25 and 50 mmol L^-1 NaCl) can stimulate seedling growth by a significant increase (10~20%, compared to controls) in both above- and underground biomasses, as estimated at the early flowering stage. We then performed RNA-seq analyses of shoot apical meristems (SAMs) from six-leaf-aged seedlings under control (CK), low (LS, 25 mmol L^-1), and high (HS, 180 mmol L^-1) salinity treatments in the two varieties. The GO and KEGG enrichment analyses of differentially expressed genes (DEGs) demonstrated that such a stimulating effect on seedling growth by low salinity stress may be caused by a more efficient capacity for photosynthesis as compensation, accompanied by a reduced energy loss for the biosynthesis of secondary metabolites and redirecting of energy to biomass formation. Our study provides a new perspective on the cultivation of oilseed rape in saline regions and new insights into the molecular mechanisms of salt tolerance in Brassica crops. The candidate genes identified in this study can serve as targets for molecular breeding selection and genetic engineering toward enhancing salt tolerance in B. napus.

A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex?

BACKGROUND

Sea-lavenders (Limonium Mill., Plumbaginaceae) are a cosmopolitan group of diploid and polyploid plants often adapted to extreme saline environments, with a mostly Tethyan distribution, occurring in the Mediterranean, Irano-Turanian, Euro-Siberian and in the New World. The halophylic Limonium vulgare polyploid complex in particular, presents a large distribution throughout extreme salt-marsh habitats and shows little morphological but high taximetric variation, frequently blurring species delimitation. In this work we pursue three main goals: assert whether SNP data from polyploid individuals has the resolution to distinguish the seven sampled species, to better understand how genetically structured Limonium vulgare is, and attempt to identify specific molecular mechanisms for the differentiation between L. maritimum and L. vulgare. For this purpose, 95 individuals were genotyped using Genotyping by Sequencing (GBS), which were assembled as two independent datasets using IPYRAD. All analyses performed downstream of assembly were fully automated. Phylogenetic inference, PCA, and admixture plots were used to infer answers to the study's main goals.

RESULTS

Close to 10,000 SNPs were obtained for each dataset. Phylogenetic analyses reveal that polyploid data can be used to infer species relationships. Population structure analyses suggest a genetically structured L. vulgare. A set of 34 SNPs were found to be fully segregated between L. vulgare and L. maritimum, two of which are potentially linked to proteins that might be involved in the speciation process.

CONCLUSION

Despite polyploid data analyses shortcomings, GBS generated SNPs have the resolution to discern all seven included species. Limonium vulgare revealed pronounced genetic structure along a geographical north-south cline. L. maritimum always appears as a distinct genetic entity. Segregated SNPs between L. vulgare and L. maritimum indicate salinity response and morphological trait control genes as potentially interesting to follow up for studying these species' divergence process.

Physiological Measurements and Transcriptome Survey Reveal How Semi-mangrove Clerodendrum inerme Tolerates Saline Adversity

Salinity adversity has been a major environmental stressor for plant growth and reproduction worldwide. Semi-mangrove Clerodendrum inerme, a naturally salt-tolerant plant, can be studied as a successful example to understand the biological mechanism of saline resistance. Since it is a sophisticated and all-round scale process for plants to react to stress, our greenhouse study interpreted the response of C. inerme to salt challenge in the following aspects: morphology, osmotic protectants, ROS production and scavenging, ion homeostasis, photosynthetic efficiency, and transcriptome reprogramming. The results drew an overview picture to illustrate the tolerant performance of C. inerme from salt acclimatization (till medium NaCl level, 0.3 mol/L) to salinity stress (high NaCl level, 0.5 mol/L). The overall evaluation leads to a conclusion that the main survival strategy of C. inerme is globally reshaping metabolic and ion profiles to adapt to saline adversity. These findings uncover the defense mechanism by which C. inerme moderates its development rate to resist the short- and long-term salt adversity, along with rebalancing the energy allocation between growth and stress tolerance.

In silico Identification of miRNAs and Their Targets in Cluster Bean for Their Role in Development and Physiological Responses

Cluster bean popularly known as “guar” is a drought-tolerant, annual legume that has recently emerged as an economically important crop, owing to its high protein and gum content. The guar gum has wide range of applications in food, pharma, and mining industries. India is the leading exporter of various cluster bean-based products all across the globe. Non-coding RNAs (miRNAs) are involved in regulating the expression of the target genes leading to variations in the associated pathways or final protein concentrations. The understanding of miRNAs and their associated targets in cluster bean is yet to be used to its full potential. In the present study, cluster bean EST (Expressed Sequence Tags) database was exploited to identify the miRNA and their predicted targets associated with metabolic and biological processes especially response to diverse biotic and abiotic stimuli using in silico approach. Computational analysis based on cluster bean ESTs led to the identification of 57 miRNAs along with their targets. To the best of our knowledge, this is the first report on identification of miRNAs and their targets using ESTs in cluster bean. The miRNA related to gum metabolism was also identified. Most abundant miRNA families predicted in our study were miR156, miR172, and miR2606. The length of most of the mature miRNAs was found to be 21nt long and the range of minimal folding energy (MFE) was 5.8–177.3 (−kcal/mol) with an average value of 25.4 (−kcal/mol). The identification of cluster bean miRNAs and their targets is predicted to hasten the miRNA discovery, resulting in better knowledge of the role of miRNAs in cluster bean development, physiology, and stress responses.