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Duan Z, Xu L, Zhou G, Zhu Z, Wang X, Shen Y, Ma X, Tian Z, Fang C. Unlocking soybean potential: genetic resources and omics for breeding. J Genet Genomics 2025:S1673-8527(25)00041-4. [PMID: 39984157 DOI: 10.1016/j.jgg.2025.02.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2024] [Revised: 02/11/2025] [Accepted: 02/12/2025] [Indexed: 02/23/2025]
Abstract
Soybean (Glycine max) is a vital foundation of global food security, providing a primary source of high-quality protein and oil for human consumption and animal feed. The rising global population has significantly increased the demand for soybeans, emphasizing the urgency of developing high-yield, stress-tolerant, and nutritionally superior cultivars. The extensive collection of soybean germplasm resources-including wild relatives, landraces, and cultivars-represents a valuable reservoir of genetic diversity critical for breeding advancements. Recent breakthroughs in genomic technologies, particularly high-throughput sequencing and multi-omics approaches, have revolutionized the identification of key genes associated with essential agronomic traits within these resources. These innovations enable precise and strategic utilization of genetic diversity, empowering breeders to integrate traits that improve yield potential, resilience to biotic and abiotic stresses, and nutritional quality. This review highlights the critical role of genetic resources and omics-driven innovations in soybean breeding. It also offers insights into strategies for accelerating the development of elite soybean cultivars to meet the growing demands of global soybean production.
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Affiliation(s)
- Zongbiao Duan
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China
| | - Liangwei Xu
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China
| | - Guoan Zhou
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China; State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Zhou Zhu
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China
| | - Xudong Wang
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China
| | - Yanting Shen
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China; State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Xin Ma
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Zhixi Tian
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China; State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
| | - Chao Fang
- Yazhouwan National Laboratory, Sanya, Hainan 572000, China.
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Luo K, Yuan X, Zuo J, Xue Y, Zhang K, Chen P, Li Y, Lin P, Wang X, Yang W, Flexas J, Yong T. Light recovery after maize harvesting promotes soybean flowering in a maize-soybean relay strip intercropping system. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 118:2188-2201. [PMID: 38581688 DOI: 10.1111/tpj.16738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Revised: 02/07/2024] [Accepted: 03/18/2024] [Indexed: 04/08/2024]
Abstract
Moving from sole cropping to intercropping is a transformative change in agriculture, contributing to yield. Soybeans adapt to light conditions in intercropping by adjusting the onset of reproduction and the inflorescence architecture to optimize reproductive success. Maize-soybean strip intercropping (MS), maize-soybean relay strip intercropping (IS), and sole soybean (SS) systems are typical soybean planting systems with significant differences in light environments during growth periods. To elucidate the effect of changes in the light environment on soybean flowering processes and provide a theoretical basis for selecting suitable varieties in various planting systems to improve yields, field experiments combining planting systems (IS, MS, and SS) and soybean varieties (GQ8, GX7, ND25, and NN996) were conducted in 2021 and 2022. Results showed that growth recovery in the IS resulted in a balance in the expression of TERMINAL FLOWER 1 (TFL1) and FLOWERING LOCUS T (FT) in the meristematic tissues of soybeans, which promoted the formation of new branches or flowers. IS prolonged the flowering time (2-7 days) and increased the number of forming flowers compared with SS (93.0 and 169%) and MS (67.3 and 103.3%) at the later soybean flowering stage. The higher carbon and nitrogen content in the middle and bottom canopies of soybean contributed to decreased flower abscission by 26.7 and 30.2%, respectively, compared with SS. Canopy light environment recovery promoted branch and flower formation and transformation of flowers into pods with lower flower-pod abscission, which contributed to elevating soybean yields in late-maturing and multibranching varieties (ND25) in IS.
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Affiliation(s)
- Kai Luo
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
- Research Group on Plant Biology Under Mediterranean Conditions, Universitat de les Illes Balears/Instituto de Investigaciones Agroambientales y de Economía del Agua (INAGEA), Carretera de Valldemossa Km 7.5, Palma de Mallorca, Illes Balears, 07122, Spain
| | - Xiaoting Yuan
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Jia Zuo
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Yuanyuan Xue
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Kejing Zhang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Ping Chen
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Yiling Li
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Ping Lin
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Xiaochun Wang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Wenyu Yang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
| | - Jaume Flexas
- Research Group on Plant Biology Under Mediterranean Conditions, Universitat de les Illes Balears/Instituto de Investigaciones Agroambientales y de Economía del Agua (INAGEA), Carretera de Valldemossa Km 7.5, Palma de Mallorca, Illes Balears, 07122, Spain
| | - Taiwen Yong
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Eco- Physiology and Farming System in Southwest of China, Chengdu, China
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Oikawa A, Takeuchi K, Morita K, Horibe Y, Sasaki R, Murayama H. Effects of Climate Conditions before Harvest Date on Edamame Metabolome. PLANTS (BASEL, SWITZERLAND) 2023; 13:87. [PMID: 38202395 PMCID: PMC10780805 DOI: 10.3390/plants13010087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 12/06/2023] [Accepted: 12/21/2023] [Indexed: 01/12/2024]
Abstract
Edamame is a green soybean that is rich in nutrients. Boiled edamame has been traditionally used for food in the East Asia region. It was known among farmers that conditions, such as temperature and climate on the day of harvest, affect the quality of edamame. Large-scale farmers harvest edamame on multiple days in the same year; however, the quality of edamame varies from day to day due to variations in climate conditions. In this study, we harvested edamame over several days between 2013 and 2018, obtained the climate conditions on the harvest date, and performed metabolome analysis using capillary electrophoresis mass spectrometry. To clarify the correlation between climate conditions before the harvest date and edamame components, comparative analyses of the obtained meteorological and metabolomic data were conducted. We found positive and negative correlations between the sunshine duration and average temperature, and the amounts of some edamame components. Furthermore, correlations were observed between the annual fluctuations in climate conditions and edamame components. Our findings suggest that the climate conditions before the date of harvesting are closely related to edamame quality.
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Affiliation(s)
- Akira Oikawa
- Graduate School of Agriculture, Kyoto University, Kitashirakawaoiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
- Faculty of Agriculture, Yamagata University, Wakaba-machi 1-23, Tsuruoka 997-8555, Japan (H.M.)
- RIKEN Center for Sustainable Resource Science, Suehiro-cho 1-7-22, Tsurumi-ku, Yokohama 230-0045, Japan;
| | - Katsutaka Takeuchi
- Faculty of Agriculture, Yamagata University, Wakaba-machi 1-23, Tsuruoka 997-8555, Japan (H.M.)
| | - Kei Morita
- Faculty of Agriculture, Yamagata University, Wakaba-machi 1-23, Tsuruoka 997-8555, Japan (H.M.)
| | - Yamato Horibe
- Faculty of Agriculture, Yamagata University, Wakaba-machi 1-23, Tsuruoka 997-8555, Japan (H.M.)
| | - Ryosuke Sasaki
- RIKEN Center for Sustainable Resource Science, Suehiro-cho 1-7-22, Tsurumi-ku, Yokohama 230-0045, Japan;
| | - Hideki Murayama
- Faculty of Agriculture, Yamagata University, Wakaba-machi 1-23, Tsuruoka 997-8555, Japan (H.M.)
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