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He C, Liu W, Jin M, Li Y, Wu Y, Shan L, Chong P, Wei M, Hu F, Liu Y, Li C, Zhang Q. Analysis of full length transcriptome and resistance characteristics of Atraphaxis bracteata under drought. Sci Rep 2025; 15:807. [PMID: 39755718 PMCID: PMC11700114 DOI: 10.1038/s41598-024-80831-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Accepted: 11/21/2024] [Indexed: 01/06/2025] Open
Abstract
Drought is one of the main environmental factors affecting plant survival and growth. Atraphaxis bracteata is a common desert plant mainly utilized in afforestation and desertification control. This study analyzed the morphological, physiological and molecular regulatory characteristics of different organs of A. bracteata under drought stress. The results showed that with the intensification of drought stress, the height, root length and leaf area of A. bracteata seedlings decreased, while the content of osmotic substances and antioxidant enzyme activity increased. Furthermore, a total of 63 907 non-redundant transcript sequences, of which 55 574 transcripts were annotated, 248 178 FLNC sequences, 107 112 high-quality consistent sequences and 291 314 CCSs were obtained from Iso-Seq. Meanwhile, a total of 2 039 AS events, 22 919 SSR, 40 404 CDS and 5 902 lncRNA were also obtained. The RNA-Seq analysis results revealed that a total of 2 821, 3 907 and 5 532 DETs were identified from roots, stems and leaves, respectively, and which had significantly enrichment in "circadian rhythm-plant" and "starch and sucrose metabolism" pathway. These results would be great significance for further research on the stress resistance of A. bracteata and these DETs function.
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Affiliation(s)
- Cai He
- College of Forestry, Gansu Agricultural University, Lanzhou, 730000, China
- Wuwei Academy of Forestry, Wuwei, 733000, China
| | - Wei Liu
- Wuwei Academy of Forestry, Wuwei, 733000, China
| | - Min Jin
- Wuwei Academy of Forestry, Wuwei, 733000, China
| | - Yi Li
- College of Forestry, Gansu Agricultural University, Lanzhou, 730000, China.
| | - Yuan Wu
- Wuwei Academy of Forestry, Wuwei, 733000, China
| | - Lishan Shan
- College of Forestry, Gansu Agricultural University, Lanzhou, 730000, China
| | - Peifang Chong
- College of Forestry, Gansu Agricultural University, Lanzhou, 730000, China
| | - Meiying Wei
- College of Forestry, Gansu Agricultural University, Lanzhou, 730000, China
| | - Fang Hu
- Wuwei Academy of Forestry, Wuwei, 733000, China
| | - Yuan Liu
- College of Forestry, Gansu Agricultural University, Lanzhou, 730000, China
| | - Chaoqun Li
- College of Forestry, Gansu Agricultural University, Lanzhou, 730000, China
| | - Qinde Zhang
- Wuwei Academy of Forestry, Wuwei, 733000, China.
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Khokhar AA, Hui L, Khan D, You Z, Zaman QU, Usman B, Wang HF. Transcriptome Profiles Reveal Key Regulatory Networks during Single and Multifactorial Stresses Coupled with Melatonin Treatment in Pitaya ( Selenicereus undatus L.). Int J Mol Sci 2024; 25:8901. [PMID: 39201587 PMCID: PMC11354645 DOI: 10.3390/ijms25168901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2024] [Revised: 08/03/2024] [Accepted: 08/13/2024] [Indexed: 09/02/2024] Open
Abstract
In response to evolving climatic conditions, plants frequently confront multiple abiotic stresses, necessitating robust adaptive mechanisms. This study focuses on the responses of Selenicereus undatus L. to both individual stresses (cadmium; Cd, salt; S, and drought; D) and their combined applications, with an emphasis on evaluating the mitigating effects of (M) melatonin. Through transcriptome analysis, this study identifies significant gene expression changes and regulatory network activations. The results show that stress decreases pitaya growth rates by 30%, reduces stem and cladode development by 40%, and increases Cd uptake under single and combined stresses by 50% and 70%, respectively. Under stress conditions, enhanced activities of H2O2, POD, CAT, APX, and SOD and elevated proline content indicate strong antioxidant defenses. We identified 141 common DEGs related to stress tolerance, most of which were related to AtCBP, ALA, and CBP pathways. Interestingly, the production of genes related to signal transduction and hormones, including abscisic acid and auxin, was also significantly induced. Several calcium-dependent protein kinase genes were regulated during M and stress treatments. Functional enrichment analysis showed that most of the DEGs were enriched during metabolism, MAPK signaling, and photosynthesis. In addition, weighted gene co-expression network analysis (WGCNA) identified critical transcription factors (WRKYs, MYBs, bZIPs, bHLHs, and NACs) associated with antioxidant activities, particularly within the salmon module. This study provides morpho-physiological and transcriptome insights into pitaya's stress responses and suggests molecular breeding techniques with which to enhance plant resistance.
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Affiliation(s)
- Aamir Ali Khokhar
- Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China; (A.A.K.); (L.H.); (D.K.); (Z.Y.); (Q.U.Z.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China
| | - Liu Hui
- Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China; (A.A.K.); (L.H.); (D.K.); (Z.Y.); (Q.U.Z.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China
| | - Darya Khan
- Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China; (A.A.K.); (L.H.); (D.K.); (Z.Y.); (Q.U.Z.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China
| | - Zhang You
- Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China; (A.A.K.); (L.H.); (D.K.); (Z.Y.); (Q.U.Z.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China
| | - Qamar U Zaman
- Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China; (A.A.K.); (L.H.); (D.K.); (Z.Y.); (Q.U.Z.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China
| | - Babar Usman
- Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China; (A.A.K.); (L.H.); (D.K.); (Z.Y.); (Q.U.Z.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China
| | - Hua-Feng Wang
- Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China; (A.A.K.); (L.H.); (D.K.); (Z.Y.); (Q.U.Z.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China
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Cui X, Tang M, Li L, Chang J, Yang X, Chang H, Zhou J, Liu M, Wang Y, Zhou Y, Sun F, Chen Z. Expression Patterns and Molecular Mechanisms Regulating Drought Tolerance of Soybean [ Glycine max (L.) Merr.] Conferred by Transcription Factor Gene GmNAC19. Int J Mol Sci 2024; 25:2396. [PMID: 38397076 PMCID: PMC10889163 DOI: 10.3390/ijms25042396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Revised: 02/13/2024] [Accepted: 02/14/2024] [Indexed: 02/25/2024] Open
Abstract
NAC transcription factors are commonly involved in the plant response to drought stress. A transcriptome analysis of root samples of the soybean variety 'Jiyu47' under drought stress revealed the evidently up-regulated expression of GmNAC19, consistent with the expression pattern revealed by quantitative real-time PCR analysis. The overexpression of GmNAC19 enhanced drought tolerance in Saccharomyces cerevisiae INVSc1. The seed germination percentage and root growth of transgenic Arabidopsis thaliana were improved in comparison with those of the wild type, while the transgenic soybean composite line showed improved chlorophyll content. The altered contents of physiological and biochemical indices (i.e., soluble protein, soluble sugar, proline, and malondialdehyde) related to drought stress and the activities of three antioxidant enzymes (i.e., superoxide dismutase, peroxidase, and catalase) revealed enhanced drought tolerance in both transgenic Arabidopsis and soybean. The expressions of three genes (i.e., P5CS, OAT, and P5CR) involved in proline synthesis were decreased in the transgenic soybean hairy roots, while the expression of ProDH involved in the breakdown of proline was increased. This study revealed the molecular mechanisms underlying drought tolerance enhanced by GmNAC19 via regulation of the contents of soluble protein and soluble sugar and the activities of antioxidant enzymes, providing a candidate gene for the molecular breeding of drought-tolerant crop plants.
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Affiliation(s)
- Xiyan Cui
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Minghao Tang
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Lei Li
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Jiageng Chang
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Xiaoqin Yang
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Hongli Chang
- Shaanxi Key Laboratory for Animal Conservation, School of Life Sciences, Northwest University, Xi’an 710069, China
| | - Jiayu Zhou
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Miao Liu
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Yan Wang
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Ying Zhou
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
| | - Fengjie Sun
- Department of Biological Sciences, School of Science and Technology, Georgia Gwinnett College, Lawrenceville, GA 30043, USA
| | - Zhanyu Chen
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China; (X.C.); (Y.W.); (Y.Z.)
- College of Agronomy, Jilin Agricultural University, Changchun 130118, China
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