1
|
Falcioni R, Gonçalves JVF, de Oliveira KM, de Oliveira CA, Reis AS, Crusiol LGT, Furlanetto RH, Antunes WC, Cezar E, de Oliveira RB, Chicati ML, Demattê JAM, Nanni MR. Chemometric Analysis for the Prediction of Biochemical Compounds in Leaves Using UV-VIS-NIR-SWIR Hyperspectroscopy. PLANTS (BASEL, SWITZERLAND) 2023; 12:3424. [PMID: 37836163 PMCID: PMC10574701 DOI: 10.3390/plants12193424] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 09/23/2023] [Accepted: 09/26/2023] [Indexed: 10/15/2023]
Abstract
Reflectance hyperspectroscopy is recognised for its potential to elucidate biochemical changes, thereby enhancing the understanding of plant biochemistry. This study used the UV-VIS-NIR-SWIR spectral range to identify the different biochemical constituents in Hibiscus and Geranium plants. Hyperspectral vegetation indices (HVIs), principal component analysis (PCA), and correlation matrices provided in-depth insights into spectral differences. Through the application of advanced algorithms-such as PLS, VIP, iPLS-VIP, GA, RF, and CARS-the most responsive wavelengths were discerned. PLSR models consistently achieved R2 values above 0.75, presenting noteworthy predictions of 0.86 for DPPH and 0.89 for lignin. The red-edge and SWIR bands displayed strong associations with pivotal plant pigments and structural molecules, thus expanding the perspectives on leaf spectral dynamics. These findings highlight the efficacy of spectroscopy coupled with multivariate analysis in evaluating the management of biochemical compounds. A technique was introduced to measure the photosynthetic pigments and structural compounds via hyperspectroscopy across UV-VIS-NIR-SWIR, underpinned by rapid multivariate PLSR. Collectively, our results underscore the burgeoning potential of hyperspectroscopy in precision agriculture. This indicates a promising paradigm shift in plant phenotyping and biochemical evaluation.
Collapse
Affiliation(s)
- Renan Falcioni
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - João Vitor Ferreira Gonçalves
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - Karym Mayara de Oliveira
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - Caio Almeida de Oliveira
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - Amanda Silveira Reis
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - Luis Guilherme Teixeira Crusiol
- Embrapa Soja (National Soybean Research Centre–Brazilian Agricultural Research Corporation), Londrina 86001-970, PR, Brazil;
| | | | - Werner Camargos Antunes
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - Everson Cezar
- Department of Agricultural and Earth Sciences, University of Minas Gerais State, Passos 37902-108, MG, Brazil;
| | - Roney Berti de Oliveira
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - Marcelo Luiz Chicati
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| | - José Alexandre M. Demattê
- Department of Soil Science, Luiz de Queiroz College of Agriculture, University of São Paulo, Av. Pádua Dias 11, Piracicaba 13418-260, SP, Brazil;
| | - Marcos Rafael Nanni
- Graduate Program in Agronomy, Department of Agronomy, State University of Maringá, Av. Colombo 5790, Maringá 87020-900, PR, Brazil; (J.V.F.G.); (K.M.d.O.); (C.A.d.O.); (A.S.R.); (W.C.A.); (R.B.d.O.); (M.L.C.); (M.R.N.)
| |
Collapse
|
2
|
Liao WC, Mukundan A, Sadiaza C, Tsao YM, Huang CW, Wang HC. Systematic meta-analysis of computer-aided detection to detect early esophageal cancer using hyperspectral imaging. BIOMEDICAL OPTICS EXPRESS 2023; 14:4383-4405. [PMID: 37799695 PMCID: PMC10549751 DOI: 10.1364/boe.492635] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 07/05/2023] [Accepted: 07/06/2023] [Indexed: 10/07/2023]
Abstract
One of the leading causes of cancer deaths is esophageal cancer (EC) because identifying it in early stage is challenging. Computer-aided diagnosis (CAD) could detect the early stages of EC have been developed in recent years. Therefore, in this study, complete meta-analysis of selected studies that only uses hyperspectral imaging to detect EC is evaluated in terms of their diagnostic test accuracy (DTA). Eight studies are chosen based on the Quadas-2 tool results for systematic DTA analysis, and each of the methods developed in these studies is classified based on the nationality of the data, artificial intelligence, the type of image, the type of cancer detected, and the year of publishing. Deeks' funnel plot, forest plot, and accuracy charts were made. The methods studied in these articles show the automatic diagnosis of EC has a high accuracy, but external validation, which is a prerequisite for real-time clinical applications, is lacking.
Collapse
Affiliation(s)
- Wei-Chih Liao
- Department of Internal Medicine, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan
- Graduate Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan
| | - Arvind Mukundan
- Department of Mechanical Engineering, National Chung Cheng University, 168, University Rd., Min Hsiung, Chia Yi 62102, Taiwan
| | - Cleorita Sadiaza
- Department of Mechanical Engineering, Far Eastern University, P. Paredes St., Sampaloc, Manila, 1015, Philippines
| | - Yu-Ming Tsao
- Department of Mechanical Engineering, National Chung Cheng University, 168, University Rd., Min Hsiung, Chia Yi 62102, Taiwan
| | - Chien-Wei Huang
- Department of Gastroenterology, Kaohsiung Armed Forces General Hospital, 2, Zhongzheng 1st.Rd., Lingya District, Kaohsiung City 80284, Taiwan
- Department of Nursing, Tajen University, 20, Weixin Rd., Yanpu Township, Pingtung County 90741, Taiwan
| | - Hsiang-Chen Wang
- Department of Mechanical Engineering, National Chung Cheng University, 168, University Rd., Min Hsiung, Chia Yi 62102, Taiwan
- Department of Medical Research, Dalin Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, No. 2, Minsheng Road, Dalin, Chiayi, 62247, Taiwan
- Director of Technology Development, Hitspectra Intelligent Technology Co., Ltd., 4F., No. 2, Fuxing 4th Rd., Qianzhen Dist., Kaohsiung City 80661, Taiwan
| |
Collapse
|
3
|
Falcioni R, Santos GLAAD, Crusiol LGT, Antunes WC, Chicati ML, Oliveira RBD, Demattê JAM, Nanni MR. Non-Invasive Assessment, Classification, and Prediction of Biophysical Parameters Using Reflectance Hyperspectroscopy. PLANTS (BASEL, SWITZERLAND) 2023; 12:2526. [PMID: 37447089 DOI: 10.3390/plants12132526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 06/22/2023] [Accepted: 07/01/2023] [Indexed: 07/15/2023]
Abstract
Hyperspectral technology offers significant potential for non-invasive monitoring and prediction of morphological parameters in plants. In this study, UV-VIS-NIR-SWIR reflectance hyperspectral data were collected from Nicotiana tabacum L. plants using a spectroradiometer. These plants were grown under different light and gibberellic acid (GA3) concentrations. Through spectroscopy and multivariate analyses, key growth parameters, such as height, leaf area, energy yield, and biomass, were effectively evaluated based on the interaction of light with leaf structures. The shortwave infrared (SWIR) bands, specifically SWIR1 and SWIR2, showed the strongest correlations with these growth parameters. When classifying tobacco plants grown under different GA3 concentrations in greenhouses, artificial intelligence (AI) and machine learning (ML) algorithms were employed, achieving an average accuracy of over 99.1% using neural network (NN) and gradient boosting (GB) algorithms. Among the 34 tested vegetation indices, the photochemical reflectance index (PRI) demonstrated the strongest correlations with all evaluated plant phenotypes. Partial least squares regression (PLSR) models effectively predicted morphological attributes, with R2CV values ranging from 0.81 to 0.87 and RPDP values exceeding 2.09 for all parameters. Based on Pearson's coefficient XYZ interpolations and HVI algorithms, the NIR-SWIR band combination proved the most effective for predicting height and leaf area, while VIS-NIR was optimal for optimal energy yield, and VIS-VIS was best for predicting biomass. To further corroborate these findings, the SWIR bands for certain morphological characteristic wavelengths selected with s-PLS were most significant for SWIR1 and SWIR2, while i-PLS showed a more uniform distribution in VIS-NIR-SWIR bands. Therefore, SWIR hyperspectral bands provide valuable insights into developing alternative bands for remote sensing measurements to estimate plant morphological parameters. These findings underscore the potential of remote sensing technology for rapid, accurate, and non-invasive monitoring within stationary high-throughput phenotyping systems in greenhouses. These insights align with advancements in digital and precision technology, indicating a promising future for research and innovation in this field.
Collapse
Affiliation(s)
- Renan Falcioni
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil
| | | | - Luis Guilherme Teixeira Crusiol
- Embrapa Soja (National Soybean Research Center-Brazilian Agricultural Research Corporation), Rodovia Carlos João Strass, s/nº, Distrito de Warta, Londrina 86001-970, Paraná, Brazil
| | - Werner Camargos Antunes
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil
| | - Marcelo Luiz Chicati
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil
| | - Roney Berti de Oliveira
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil
| | - José A M Demattê
- Department of Soil Science, Luiz de Queiroz College of Agriculture, University of São Paulo, Av. Pádua Dias, 11, Piracicaba 13418-260, São Paulo, Brazil
| | - Marcos Rafael Nanni
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil
| |
Collapse
|
4
|
Investigating the Potential of Sentinel-2 MSI in Early Crop Identification in Northeast China. REMOTE SENSING 2022. [DOI: 10.3390/rs14081928] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Early crop identification can provide timely and valuable information for agricultural planting management departments to make reasonable and correct decisions. At present, there is still a lack of systematic summary and analysis on how to obtain real-time samples in the early stage, what the optimal feature sets are, and what level of crop identification accuracy can be achieved at different stages. First, this study generated training samples with the help of historical crop maps in 2019 and remote sensing images in 2020. Then, a feature optimization method was used to obtain the optimal features in different stages. Finally, the differences of the four classifiers in identifying crops and the variation characteristics of crop identification accuracy at different stages were analyzed. These experiments were conducted at three sites in Heilongjiang Province to evaluate the reliability of the results. The results showed that the earliest identification time of corn can be obtained in early July (the seven leaves period) with an identification accuracy up to 86%. In the early stages, its accuracy was 40~79%, which was low, and could not reach the satisfied accuracy requirements. In the middle stages, a satisfactory recognition accuracy could be achieved, and its recognition accuracy was 79~100%. The late stage had a higher recognition accuracy, which was 90~100%. The accuracy of soybeans at each stage was similar to that of corn, and the earliest identification time of soybeans could also be obtained in early July (the blooming period) with an identification accuracy up to 87%. Its accuracy in the early growth stage was 35~71%; in the middle stage, it was 69~100%; and in the late stage, it was 92~100%. Unlike corn and soybeans, the earliest identification time of rice could be obtained at the end of April (the flooding period) with an identification accuracy up to 86%. In the early stage, its accuracy was 58~100%; in the middle stage, its accuracy was 93~100%; and in the late stage, its accuracy was 96~100%. In terms of crop identification accuracy in the whole growth stage, GBDT and RF performed better than other classifiers in our three study areas. This study systematically investigated the potential of early crop recognition in Northeast China, and the results are helpful for relevant applications and decision making of crop recognition in different crop growth stages.
Collapse
|