Vis-NIR Spectroscopy and PLS Regression with Waveband Selection for Estimating the Total C and N of Paddy Soils in Madagascar

Quantitative analysis of soil potassium by near-infrared (NIR) spectroscopy combined with a three-step progressive hybrid variable selection strategy

Soil potassium is a crucial nutrient element necessary for crop growth, and its efficient measurement has become essential for developing rational fertilization plans and optimizing crop growth benefits. At present, data mining technology based on near-infrared (NIR) spectroscopy analysis has proven to be a powerful tool for real-time monitoring of soil potassium content. However, as technology and instruments improve, the curse of the dimensionality problem also increases accordingly. Therefore, it is urgent to develop efficient variable selection methods suitable for NIR spectroscopy analysis techniques. In this study, we proposed a three-step progressive hybrid variable selection strategy, which fully leveraged the respective strengths of several high-performance variable selection methods. By sequentially equipping synergy interval partial least squares (SiPLS), the random forest variable importance measurement (RF(VIM)), and the improved mean impact value algorithm (IMIV) into a fusion framework, a soil important potassium variable selection method was proposed, termed as SiPLS-RF(VIM)-IMIV. Finally, the optimized variables were fitted into a partial least squares (PLS) model. Experimental results demonstrated that the PLS model embedded with the hybrid strategy effectively improved the prediction performance while reducing the model complexity. The RMSET and RT on the test set were 0.01181% and 0.88246, respectively, better than the RMSET and RT of the full spectrum PLS, SiPLS, and SiPLS-RF(VIM) methods. This study demonstrated that the hybrid strategy established based on the combination of NIR spectroscopy data and the SiPLS-RF(VIM)-IMIV method could quantitatively analyze soil potassium content levels and potentially solve other issues of data-driven soil dynamic monitoring.

Combining NIR spectroscopy with chemometrics for discriminating naturally ripened banana and calcium carbide ripened banana

Calcium carbide is prohibited as a fruit ripening agent in many countries due to its harmful effects. Current methods for detecting calcium carbide in fruit involve time-consuming and destructive chemical analysis techniques, necessitating the need for non-destructive and rapid detection techniques. This study combined near infrared (NIR) spectroscopy with chemometrics to detect two banana varieties ripened with calcium carbide in different forms when they are peeled or unpeeled. Sixteen linear discriminant analysis (LDA) models were developed with high average classification accuracies for classifying banana based on the mode used to ripen banana, type of carbide treatment and the duration of soaking banana in carbide solution. Banana colour was predicted with partial least squared regression (PLSR) models with R2CV > 0.74, RMSECV and <5.4 and RPD close to 3. NIR coupled with chemometrics has good potential as a technique for detecting carbide ripened banana even if the banana is peeled or not.

Carbohydrate accumulation patterns in mangrove and halophytic plant species under seasonal variation

This study investigates the impact of carbohydrate accumulation in mangrove and halophytic plants on their response to abiotic stress. Using soil analysis and FT-IR spectroscopy, key species (Sueda nudiflora, Aeluropus lagopoides, Avicennia marina) were examined for seasonal changes in sugar content (reducing sugars, total soluble sugars, starch). The elevated carbohydrate levels may serve as an indication of the plant's ability to adapt to different environmental conditions throughout the year. This accumulation enables plants to adapt to variations in their environment, assuring their survival and functionality during periods of environmental fluctuation. Halophytic plants' sugar content peaked during the monsoon, suggesting biotic adaptations. The mangrove Avicennia marina had year-round sugar levels. PCA and Hierarchical Cluster Analysis revealed sugar accumulation trends across species and seasons. Partial Least Squares (PLS) analysis revealed correlations between soil characteristics and sugar content, suggesting plant-microbe interactions. K-means clustering and correlation analysis of FT-IR data revealed sugar composition and resource allocation trade-offs. These findings shed light on the role of carbohydrate metabolism in enabling coastal plants to endure stress. Gaining insight into these mechanisms can enhance sustainable agriculture in challenging environments and shed light on plant adaptations to evolving environmental conditions, especially biotic interactions.

Rapid and non-destructive detection of ponceau 4R red colored pork

The characteristic colour of pork desired by consumers is a widespread phenomenon on the Ghanaian market that has led to some suspected adulteration practices. Currently available methods for monitoring pork quality are time consuming but above all, destructive (destroys the integrity of meat). This study aimed to develop rapid models that can be used to detect, classify and predict the presence of ponceau 4R in fresh pork in the Kumasi metropolis of Ghana using near-infrared spectroscopy together with chemometrics. Fresh pork samples, 120 obtained from the markets and 120 adulterated artificially in the laboratory, were subjected to near-infrared measurements. The spectra obtained were evaluated using Principal Component Analysis (PCA), Linear Discriminant Analysis (LDA) and Partial Least Square Regression (PLSR). PCA and LDA showed that scanning the skin of the pork and pretreating the spectra with Savitzky-Golay smoothing sufficed for further chemometric analysis. The classification models built using LDA showed similarities between samples obtained from the markets and the artificially adulterated samples, indicating the presence of colour adulterant. The models also revealed the importance of processing time in making the adulterated meat more appealing to consumers. PLSR, however, yielded poor results for predicting colour and adulterant concentration. In effect, PCA and LDA methods proved to be better alternatives for the detection of colored pork adulteration and can be adopted for quality control applications together with near infrared spectroscopy.

Spectral Data Processing for Field-Scale Soil Organic Carbon Monitoring

Carbon sequestration in soils under agricultural use can contribute to climate change mitigation. Spatial-temporal soil organic carbon (SOC) monitoring requires more efficient data acquisition. This study aims to evaluate the potential of spectral on-the-go proximal measurements to serve these needs. The study was conducted as a long-term field experiment. SOC values ranged between 14 and 25 g kg-1 due to different fertilization treatments. Partial least squares regression models were built based on the spectral laboratory and field data collected with two spectrometers (site-specific and on-the-go). Correction of the field data based on the laboratory data was done by testing linear transformation, piecewise direct standardization, and external parameter orthogonalization (EPO). Different preprocessing methods were applied to extract the best possible information content from the sensor signal. The models were then thoroughly interpreted concerning spectral wavelength importance using regression coefficients and variable importance in projection scores. The detailed wavelength importance analysis disclosed the challenge of using soil spectroscopy for SOC monitoring. The use of different spectrometers under varying soil conditions revealed shifts in wavelength importance. Still, our findings on the use of on-the-go spectroscopy for spatial-temporal SOC monitoring are promising.

A Novel Approach for Therapeutic Drug Monitoring of Valproic Acid Using FT-IR Spectroscopy and Nonlinear Support Vector Regression

BACKGROUND

Recent technological progress has bolstered efforts to bring personalized medicine from theory into clinical practice. However, progress in areas such as therapeutic drug monitoring (TDM) has remained somewhat stagnant. In drugs with well-known dose-response relationships, TDM can enhance patient outcomes and reduce health care costs. Traditional monitoring methods such as chromatography-based or immunoassay techniques are limited by their higher costs and slow turnaround times, making them unsuitable for real-time or onsite analysis.

OBJECTIVE

In this work, we propose the use of a fast, direct, and simple approach using Fourier transform infrared spectroscopy (FT-IR) combined with chemometric techniques for the therapeutic monitoring of valproic acid (VPA).

METHOD

In this context, a database of FT-IR spectra was constructed from human plasma samples containing various concentrations of VPA; these samples were characterized by the reference method (immunoassay technique) to determine the VPA contents. The FT-IR spectra were processed by two chemometric regression methods: partial least-squares regression (PLS) and support vector regression (SVR).

RESULTS

The results provide good evidence for the effectiveness of the combination of FT-IR spectroscopy and SVR modeling for estimating VPA in human plasma. SVR models showed better predictive abilities than PLS models in terms of root-mean-square error of calibration and prediction RMSEC, RMSEP, R2Cal, R2Pred, and residual predictive deviation (RPD).

CONCLUSIONS

This analytical tool offers potential for real-time TDM in the clinical setting.

HIGHLIGHTS

FTIR spectroscopy was evaluated for the first time to predict VPA in human plasma for TDM. Two regressions were evaluated to predict VPA in human plasma, and the best-performing model was obtained using nonlinear SVR.

Optimization of sweet basil harvest time and cultivar characterization using near-infrared spectroscopy, liquid and gas chromatography, and chemometric statistical methods

BACKGROUND

Terpene, eugenol and polyphenolic contents of basil are major determinants of quality, which is affected by genetics, weather, growing practices, pests and diseases. Here, we aimed to develop a simple predictive analytical method for determining the polyphenol, eugenol and terpene content of the leaves of major Israeli sweet basil cultivars grown hydroponically, as a function of harvest time, through the use of near-infrared (NIR) spectroscopy, liquid/gas chromatography, and chemometric methods. We also wanted to identify the harvest time associated with the highest terpene, eugenol and polyphenol content.

RESULTS

Six different cultivars and four different harvest times were analyzed. Partial least square regression (PLS-R) analysis yielded an accurate, predictive model that explained more than 93% of the population variance for all of the analyzed compounds. The model yielded good/excellent prediction (R²  > 0.90, R² _cv and R² _pre  > 0.80) and very good residual predictive deviation (RPD > 2) for all of the analyzed compounds. Concentrations of rosmarinic acid, eugenol and terpenes increased steadily over the first 3 weeks, peaking in the fourth week in most of the cultivars. Our PLS-discriminant analysis (PLS-DA) model provided accurate harvest classification and prediction as compared to cultivar classification. The sensitivity, specificity and accuracy of harvest classification were larger than 0.82 for all harvest time points, whereas the cultivar classification, resulted in sensitivity values lower than 0.8 in three cultivars.

CONCLUSION

The PLS-R model provided good predictions of rosmarinic acid, eugenol and terpene content. Our NIR coupled with a PLS-DA demonstrated reasonable solution for harvest and cultivar classification. © 2021 Society of Chemical Industry.

Rapid Detection of Different Types of Soil Nitrogen Using Near-Infrared Hyperspectral Imaging

Rapid and accurate determination of soil nitrogen supply capacity by detecting nitrogen content plays an important role in guiding agricultural production activities. In this study, near-infrared hyperspectral imaging (NIR-HSI) combined with two spectral preprocessing algorithms, two characteristic wavelength selection algorithms and two machine learning algorithms were applied to determine the content of soil nitrogen. Two types of soils (laterite and loess, collected in 2020) and three types of nitrogen fertilizers, namely, ammonium bicarbonate (ammonium nitrogen, NH4-N), sodium nitrate (nitrate nitrogen, NO3-N) and urea (urea nitrogen, urea-N), were studied. The NIR characteristic peaks of three types of nitrogen were assigned and regression models were established. By comparing the model average performance indexes after 100 runs, the best model suitable for the detection of nitrogen in different types was obtained. For NH4-N, R2p = 0.92, RMSEP = 0.77% and RPD = 3.63; for NO3-N, R2p = 0.92, RMSEP = 0.74% and RPD = 4.17; for urea-N, R2p = 0.96, RMSEP = 0.57% and RPD = 5.24. It can therefore be concluded that HSI spectroscopy combined with multivariate models is suitable for the high-precision detection of various soil N in soils. This study provided a research basis for the development of precision agriculture in the future.

Study on hyperspectral estimation model of soil organic carbon content in the wheat field under different water treatments

Hyperspectral remote sensing technology can be used to monitor the soil nutrient changes in a rapid, real-time, and non-destructive manner, which is of great significance to promote the development of precision agriculture. In this paper, 225 soil samples were studied. The effects of different water treatments on soil organic carbon (SOC) content, and the relationship between SOC content and spectral reflectance (350-2500 nm) were studied. 17 kinds of preprocessing algorithm were performed on the original spectral (R), and the five allocation ratios of calibration to verification sets were set. Finally, the model was constructed by partial least squares regression (PLSR). The results showed that the effects of water treatment on SOC content were different in different growth stages of winter wheat. Results of correlation analysis showed that the differential transformation can refine the spectral characteristics, and improve the correlation between SOC content and spectral reflectance. Results of model construction showed that the models constructed by second-order differential transformation were not good. But the ratio of standard deviation to the standard prediction error (RPD) values of the models were constructed by simple mathematical transformation (T0-T5) and first-order differential transformation (T6-T11) can reach more than 1.4. The simple mathematical transformation (T0-T2, T4-T5) and the first-order differential transformation (T6-T10) resulted in the highest RPD in mode 5 and mode 2, respectively. Among all the models, the model of T7 in mode 2 reach the highest accuracy with a RPD value of 1.9861. Therefore, it is necessary to consider the data preprocessing algorithm and allocation ratio in the process of constructing the hyperspectral monitoring model of SOC.

Using a One-Dimensional Convolutional Neural Network on Visible and Near-Infrared Spectroscopy to Improve Soil Phosphorus Prediction in Madagascar

As a proximal soil sensing technique, laboratory visible and near-infrared (Vis-NIR) spectroscopy is a promising tool for the quantitative estimation of soil properties. However, there remain challenges for predicting soil phosphorus (P) content and availability, which requires a reliable model applicable for different land-use systems to upscale. Recently, a one-dimensional convolutional neural network (1D-CNN) corresponding to the spectral information of soil was developed to considerably improve the accuracy of soil property predictions. The present study investigated the predictive ability of a 1D-CNN model to estimate soil available P (oxalate-extractable P; Pox) content in soils by comparing it with partial least squares (PLS) and random forest (RF) regressions using soil samples (n = 318) collected from natural (forest and non-forest) and cultivated (upland and flooded rice fields) systems in Madagascar. Overall, the 1D-CNN model showed the best predictive accuracy (R2 = 0.878) with a highly accurate prediction ability (ratio of performance to the interquartile range = 2.492). Compared to the PLS model, the RF and 1D-CNN models indicated 4.37% and 23.77% relative improvement in root mean squared error values, respectively. Based on a sensitivity analysis, the important wavebands for predicting soil Pox were associated with iron (Fe) oxide, organic matter (OM), and water absorption, which were previously known wavelength regions for estimating P in soil. These results suggest that 1D-CNN corresponding spectral signatures can be expected to significantly improve the predictive ability for estimating soil available P (Pox) from Vis-NIR spectral data. Rapid and accurate estimation of available P content in soils using our results can be expected to contribute to effective fertilizer management in agriculture and the sustainable management of ecosystems. However, the 1D-CNN model will require a large dataset to extend its applicability to other regions of Madagascar. Thus, further updates should be tested in future studies using larger datasets from a wide range of ecosystems in the tropics.

M3GPSpectra: A novel approach integrating variable selection/construction and MLR modeling for quantitative spectral analysis

Quantitative analysis of the physical or chemical properties of various materials by using spectral analysis technology combined with chemometrics has become an important method in the field of analytical chemistry. This method aims to build a model relationship (called prediction model) between feature variables acquired by spectral sensors and components to be measured. Feature selection or transformation should be conducted to reduce the interference of irrelevant information on the prediction model because original spectral feature variables contain redundant information and massive noise. Most existing feature selection and transformation methods are single linear or nonlinear operations, which easily lead to the loss of feature information and affect the accuracy of subsequent prediction models. This research proposes a novel spectroscopic technology-oriented, quantitative analysis model construction strategy named M3GPSpectra. This tool uses genetic programming algorithm to select and reconstruct the original feature variables, evaluates the performance of selected and reconstructed variables by using multivariate regression model (MLR), and obtains the best feature combination and the final parameters of MLR through iterative learning. M3GPSpectra integrates feature selection, linear/nonlinear feature transformation, and subsequent model construction into a unified framework and thus easily realizes end-to-end parameter learning to significantly improve the accuracy of the prediction model. When applied to six types of datasets, M3GPSpectra obtains 19 prediction models, which are compared with those obtained by seven linear or non-linear popular methods. Experimental results show that M3GPSpectra obtains the best performance among the eight methods tested. Further investigation verifies that the proposed method is not sensitive to the size of the training samples. Hence, M3GPSpectra is a promising spectral quantitative analytical tool.

Estimation of Glucosinolates and Anthocyanins in Kale Leaves Grown in a Plant Factory Using Spectral Reflectance

The spectral reflectance technique for the quantification of the functional components was applied in different studies for different crops, but related research on kale leaves is limited. This study was conducted to estimate the glucosinolate and anthocyanin components of kale leaves cultivated in a plant factory based on diffuse reflectance spectroscopy through regression methods. Kale was grown in a plant factory under different treatments. After specific periods of transplantation, leaf samples were collected, and reflectance spectra were measured immediately from nine different points on each leaf. The same leaf samples were freeze-dried and stored for analysis of the functional components. Regression procedures, such as principal component regression (PCR), partial least squares regression (PLSR), and stepwise multiple linear regression (SMLR), were applied to relate the functional components with the spectral data. In the laboratory analysis, progoitrin and glucobrassicin, as well as cyanidin and malvidin, were found to be dominating components in glucosinolates and anthocyanins, respectively. From the overall analysis, the SMLR model showed better performance, and the identified wavelengths for estimating the glucosinolates and anthocyanins were in the early near-infrared (NIR) region. Specifically, reflectance at 742, 761, 787, 796, 805, 833, 855, 932, 947, and 1000 nm showed a strong correlation.

Vis-NIR Spectroscopy and Satellite Landsat-8 OLI Data to Map Soil Nutrients in Arid Conditions: A Case Study of the Northwest Coast of Egypt

The mapping of soil nutrients is a key issue for numerous applications and research fields ranging from global changes to environmental degradation, from sustainable soil management to the precision agriculture concept. The characterization, modeling and mapping of soil properties at diverse spatial and temporal scales are key factors required for different environments. This paper is focused on the use and comparison of soil chemical analyses, Visible near infrared and shortwave infrared VNIR-SWIR spectroscopy, partial least-squares regression (PLSR), Ordinary Kriging (OK), and Landsat-8 operational land imager (OLI) images, to inexpensively analyze and predict the content of different soil nutrients (nitrogen (N), phosphorus (P), and potassium (K)), pH, and soil organic matter (SOM) in arid conditions. To achieve this aim, 100 surface samples of soil were gathered to a depth of 25 cm in the Wadi El-Garawla area (the northwest coast of Egypt) using chemical analyses and reflectance spectroscopy in the wavelength range from 350 to 2500 nm. PLSR was used firstly to model the relationship between the averaged values from the ASD spectroradiometer and the available N, P, and K, pH and SOM contents in soils in order to map the predicted value using Ordinary Kriging (OK) and secondly to retrieve N, P, K, pH, and SOM values from OLI images. Thirty soil samples were selected to verify the validity of the results. The randomly selected samples included the spatial diversity and characteristics of the study area. The prediction of available of N, P, K pH and SOM in soils using VNIR-SWIR spectroscopy showed high performance (where R2 was 0.89, 0.72, 0.91, 0.65, and 0.75, respectively) and quite satisfactory results from Landsat-8 OLI images (correlation R2 values 0.71, 0.68, 0.55, 0.62 and 0.7, respectively). The results showed that about 84% of the soils of Wadi El-Garawla are characterized by low-to-moderate fertility, while about 16% of the area is characterized by high soil fertility.

Non-Destructive Quality Assessment of Tomato Paste by Using Portable Mid-Infrared Spectroscopy and Multivariate Analysis

This research aims to provide simultaneous predictions of tomato paste's multiple quality traits without any sample preparation by using a field-deployable portable infrared spectrometer. A total of 1843 tomato paste samples were supplied by four different leading tomato processors in California, USA, over the tomato seasons of 2015, 2016, 2017, and 2019. The reference levels of quality traits including, natural tomato soluble solids (NTSS), pH, Bostwick consistency, titratable acidity (TA), serum viscosity, lycopene, glucose, fructose, ascorbic acid, and citric acid were determined by official methods. A portable FT-IR spectrometer with a triple-reflection diamond ATR sampling system was used to directly collect mid-infrared spectra. The calibration and external validation models were developed by using partial least square regression (PLSR). The evaluation of models was conducted on a randomly selected external validation set. A high correlation (RCV = 0.85-0.99) between the reference values and FT-IR predicted values was observed from PLSR models. The standard errors of prediction were low (SEP = 0.04-35.11), and good predictive performances (RPD = 1.8-7.3) were achieved. Proposed FT-IR technology can be ideal for routine in-plant assessment of the tomato paste quality that would provide the tomato processors with accurate results in shorter time and lower cost.

Prediction of Soil-Available Potassium Content with Visible Near-Infrared Ray Spectroscopy of Different Pretreatment Transformations by the Boosting Algorithms

The application of visible near-infrared (VIS-NIR) analysis technology to quantify the nutrients in soil has been widely recognized. It is important to improve the performance of regression models that can predict the soil-available potassium concentration. This study collected soil samples from southern Anhui, China, and concentrated on the modelling methods by using 29 pretreatment methods. The results show that a combination of three methods, Savitzky–Golay, standard normal variate, and dislodge tendency, exhibited better stability than others because it was the most capable of achieving levels A and B of the ratio of performance of deviation. The boosting algorithms that form an ensemble of multiple weak predictors exhibited better performance than partial least square (PLS) regression and support vector regression (SVR) for the prediction of soil-available potassium. These regression models could be employed to precisely predict the soil-available potassium concentration.

Nondestructive detection of apple crispness via optical fiber spectroscopy based on effective wavelengths

Crispness is regarded as a significant quality index for apples. Currently, destructive sensory evaluation is the accepted method used to detect apple crispness, making it essential to develop a method that can detect apple crispness in a nondestructive manner. In this study, spectroscopy was proposed as the nondestructive technique for detecting apples' crispness, ultimately obtaining a spectral reflectance curve between 450 nm and 1,000 nm. In order to simplify and improve modeling efficiency, successive projections algorithm (SPA) and x-loading weights (x-LW) methods were used to select the most effective wavelengths. Partial least squares (PLS) algorithm, radial basis neural networks (RBNN), and multilayer perceptron neural networks (MLPNN) methods were used to establish the models and to predict the crispness of "Fuji" and "Qinguan" apple varieties. Based on the full wavelength (FW), the prediction accuracy of the PLS model for "Fuji" and "Qinguan" apple varieties was 92.05% and 95.87%, respectively. The effective wavelengths selected via SPA for the "Fuji" apple variety were 450.41 nm, 476.80 nm, 677.75 nm, and 750.72 nm, and the effective wavelengths selected via x-LW for the "Qinguan" apple variety were 542.51 nm, 544.79 nm, 676.96 nm, and 718.29 nm. The prediction accuracy of the PLS model based on effective wavelengths for "Fuji" and "Qinguan" apple varieties reached 91.31% and 96.41%, respectively. Compared with the RBNN model, the MLPNN model achieved better prediction results for both "Fuji" and "Qinguan" apples, with the prediction accuracy reaching 97.8% and 99.9%, respectively. Based on the above findings, effective wavelength selection and MLPNN modeling were able to detect apple crispness with the highest accuracy. Overall, it can be concluded that the less effective wavelengths are conducive to developing an instrument for crispness detection.

Application of PROSPECT for estimating total petroleum hydrocarbons in contaminated soils from leaf optical properties

Recent advances in hyperspectral spectroscopy suggest making use of leaf optical properties for monitoring soil contamination in oil production regions by detecting pigment alterations induced by Total Petroleum Hydrocarbons (TPH). However, this provides no quantitative information about the level of contamination. To achieve this, we propose an approach based on the inversion of the PROSPECT model. 1620 leaves from five species were collected on a site contaminated by 16 to 77 g.kg^-1 of TPH over a 14-month period. Their spectral signature was measured and used in PROSPECT model inversions to retrieve leaf biochemistry. The model performed well for simulating the spectral signatures (RMSE < 2%) and for estimating leaf pigment contents (RMSE ≤ 2.95 μg.cm^-2 for chlorophylls). Four out of the five species exhibited alterations in pigment contents when exposed to TPH. A strong correlation was established between leaf chlorophyll content and soil TPH concentrations (R² ≥ 0.74) for three of them, allowing accurate predictions of TPH (RMSE =3.20 g.kg^-1 and RPD = 5.17). The accuracy of predictions varied by season and improved after the growing period. This study demonstrates the capacity of PROSPECT to estimate oil contamination and opens up promising perspectives for larger-scale applications.

Rapid detection of carbon-nitrogen ratio for anaerobic fermentation feedstocks using near-infrared spectroscopy combined with BiPLS and GSA

Near-infrared spectroscopy (NIRS) is an efficient method for detecting the content of carbon and nitrogen in many materials, which solves the problems of the time-consuming and high-cost traditional chemical analysis method. To quickly detect the carbon-nitrogen ratio (C/N) for the anaerobic fermentation (AF) feedstock using NIRS, a genetic simulated annealing algorithm (GSA) is presented based on a genetic algorithm combined with a simulated annealing algorithm. By combining GSA with backward interval partial least squares (BiPLS), we construct a BiPLS-GSA algorithm to optimize the characteristic wavelength variables of NIRS; this algorithm significantly reduced the number of wavelength variables involved in modeling and effectively improved the detection accuracy and efficiency of the model. The determination coefficients, root mean squared error, mean relative error (MRE) and residual predictive deviation for the validation set in the BiPLS-GSA regression model were 0.9067, 7.6676, 5.5274%, and 3.5626, respectively. Meanwhile, compared to the entire spectrum model, the MRE was decreased by 16.54% in the BiPLS-GSA-based model. The research in this paper improves the adaptability of the prediction model based on optimizing sensitive wavelength variables for C/N, which provides a new way for rapid and accurate measurement of the C/N of AF feedstock.

Rapid-Detection Sensor for Rice Grain Moisture Based on NIR Spectroscopy

Rice grain moisture has a great impact on th production and storage storage quality of rice. The main objective of this study was to design and develop a rapid-detection sensor for rice grain moisture based on the Near-infrared spectroscopy (NIR) characteristic band, aiming to realize its accurate and on-line measurement. In this paper, the NIR spectral information of grain samples with different moisture content was obtained using a portable NIR spectrometer. Then, the partial least squares (PLS) and competitive adaptive reweighted squares (CARS) were applied to model and analyze the spectral data to find the rice grain moisture NIR spectroscopy. As a result, the 1450 nm band was sensitive to the rice grain moisture and a rapid-detection sensor was developed with a 1450 nm light emitting diode (LED) light source, InGaAs photodiode, lens and filter, whose basic principle is to establish the relationship between the rice grain moisture and the measured voltage signal. To evaluate the sensor performance, rice grain samples with 13–30% moisture content were detected, the coefficient of determination R2 was 0.936, and the sum of squares for error (SSE) was 23.44. It is concluded that this study provides a spectroscopic measuring method, as well as developing an effective and accurate sensor for the rapid determination of rice grain moisture, which is of great significance for monitoring the quality of rice grain during its production, transportation and storage process.

Laboratory Visible and Near-Infrared Spectroscopy with Genetic Algorithm-Based Partial Least Squares Regression for Assessing the Soil Phosphorus Content of Upland and Lowland Rice Fields in Madagascar

As a laboratory proximal sensing technique, the capability of visible and near-infrared (Vis-NIR) diffused reflectance spectroscopy with partial least squares (PLS) regression to determine soil properties has previously been demonstrated. However, the evaluation of the soil phosphorus (P) content—a major nutrient constraint for crop production in the tropics—is still a challenging task. PLS regression with waveband selection can improve the predictive ability of a calibration model, and a genetic algorithm (GA) has been widely applied as a suitable method for selecting wavebands in laboratory calibrations. To develop a laboratory-based proximal sensing method, this study investigated the potential to use GA-PLS regression analyses to estimate oxalate-extractable P in upland and lowland soils from laboratory Vis-NIR reflectance data. In terms of predictive ability, GA-PLS regression was compared with iterative stepwise elimination PLS (ISE-PLS) regression and standard full-spectrum PLS (FS-PLS) regression using soil samples collected in 2015 and 2016 from the surface of upland and lowland rice fields in Madagascar (n = 103). Overall, the GA-PLS model using first derivative reflectance (FDR) had the best predictive accuracy (R2 = 0.796) with a good prediction ability (residual predictive deviation (RPD) = 2.211). Selected wavebands in the GA-PLS model did not perfectly match wavelengths of previously known absorption features of soil nutrients, but in most cases, the selected wavebands were within 20 nm of previously known wavelength regions. Bootstrap procedures (N = 10,000 times) using selected wavebands also confirmed the improvements in accuracy and robustness of the GA-PLS model compared to those of the ISE-PLS and FS-PLS models. These results suggest that soil oxalate-extractable P can be predicted from Vis-NIR spectroscopy and that GA-PLS regression has the advantage of tuning optimum bands for PLS regression, contributing to a better predictive ability.

Canopy Hyperspectral Sensing of Paddy Fields at the Booting Stage and PLS Regression can Assess Grain Yield

Canopy hyperspectral (HS) sensing is a promising tool for estimating rice (Oryza sativa L.) yield. However, the timing of HS measurements is crucial for assessing grain yield prior to harvest because rice growth stages strongly influence the sensitivity to different wavelengths and the evaluation performance. To clarify the optimum growth stage for HS sensing-based yield assessments, the grain yield of paddy fields during the reproductive phase to the ripening phase was evaluated from field HS data in conjunction with iterative stepwise elimination partial least squares (ISE-PLS) regression. The field experiments involved three different transplanting dates (12 July, 26 July, and 9 August) in 2017 for six cultivars with three replicates (n = 3 × 6 × 3 = 54). Field HS measurements were performed on 2 October 2017, during the panicle initiation, booting, and ripening growth stages. The predictive accuracy of ISE-PLS was compared with that of the standard full-spectrum PLS (FS-PLS) via coefficient of determination (R2) values and root mean squared errors of cross-validation (RMSECV), and the robustness was evaluated by the residual predictive deviation (RPD). Compared with the FS-PLS models, the ISE-PLS models exhibited higher R2 values and lower RMSECV values for all data sets. Overall, the highest R2 values and the lowest RMSECV values were obtained from the ISE-PLS model at the booting stage (R2 = 0.873, RMSECV = 22.903); the RPD was >2.4. Selected HS wavebands in the ISE-PLS model were identified in the red-edge (710–740 nm) and near-infrared (830 nm) regions. Overall, these results suggest that the booting stage might be the best time for in-season rice grain assessment and that rice yield could be evaluated accurately from the HS sensing data via the ISE-PLS model.

Quantitative Determination of Thiabendazole in Soil Extracts by Surface-Enhanced Raman Spectroscopy

Thiabendazole (TBZ) is widely used in sclerotium blight, downy mildew as well as root rot disease prevention and treatment in plant. The indiscriminate use of TBZ causes the excess pesticide residues in soil, which leads to soil hardening and environmental pollution. Therefore, it is important to accurately monitor whether the TBZ residue in soil exceeds the standard. For this study, density functional theory (DFT) was used to theoretically analyze the molecular structure of TBZ, gold nanoparticles (AuNPs) were used to enhance the detection signal of surface-enhanced Raman spectroscopy (SERS) and the TBZ residue in red soil extracts was quantitatively determined by SERS. As a result, the theoretical Raman peaks of TBZ calculated by DFT were basically consistent with the measured results. Moreover, 784, 1008, 1270, 1328, 1406 and 1576 cm^-1 could be determined as the TBZ characteristic peaks in soil and the limits of detection (LOD) could reach 0.1 mg/L. Also, there was a good linear correlation between the intensity of Raman peaks and TBZ concentration in soil (784 cm^-1: y = 672.26x + 5748.4, R² = 0.9948; 1008 cm^-1: y = 1155.4x + 8740.2, R² = 0.9938) and the limit of quantification (LOQ) of these two linear models can reach 1 mg/L. The relative standard deviation (RSD) ranged from 1.36% to 8.02% and the recovery was ranging from 95.90% to 116.65%. In addition, the 300⁻1700 cm^-1 SERS of TBZ were analyzed by the partial least squares (PLS) and backward interval partial least squares (biPLS). Also, the prediction accuracy of TBZ in soil (R_p² = 0.9769, RMSE_P = 0.556 mg/L, RPD = 5.97) was the highest when the original spectra were pretreated by standard normal variation (SNV) and then modeled by PLS. In summary, the TBZ in red soil extracts could be quantitatively determined by SERS based on AuNPs, which was beneficial to provide a new, rapid and accurate scheme for the detection of pesticide residues in soil.

Density Functional Theory Analysis of Deltamethrin and Its Determination in Strawberry by Surface Enhanced Raman Spectroscopy

Deltamethrin is widely used in pest prevention and control such as red spiders, aphids, and grubs in strawberry. It is important to accurately monitor whether the deltamethrin residue in strawberry exceeds the standard. In this paper, density functional theory (DFT) was used to theoretically analyze the molecular structure of deltamethrin, gold nanoparticles (AuNPs) and silver nanoparticles (AgNPs) were used to enhance the surface enhanced Raman spectroscopy (SERS) detection signal. As a result, the theoretical Raman peaks of deltamethrin calculated by DFT were basically similar to the measured results, and the enhancing effects based on AuNPs was better than that of AgNPs. Moreover, 554, 736, 776, 964, 1000, 1166, 1206, 1593, 1613, and 1735 cm⁻¹ could be determined as deltamethrin characteristic peaks, among which only three Raman peaks (736, 1000, and 1166 cm⁻¹) could be used as the deltamethrin characteristic peaks in strawberry when the detection limit reached 0.1 mg/L. In addition, the 500⁻1800 cm⁻¹ SERS of deltamethrin were analyzed by the partial least squares (PLS) and backward interval partial least squares (BIPLS). The prediction accuracy of deltamethrin in strawberry (Rp2 = 0.93, RMSE_p = 4.66 mg/L, RPD = 3.59) was the highest when the original spectra were pretreated by multiplicative scatter correction (MSC) and then modeled by BIPLS. In conclusion, the deltamethrin in strawberry could be qualitatively analyzed and quantitatively determined by SERS based on AuNPs enhancement, which provides a new detection scheme for deltamethrin residue determination in strawberry.

Rapid Determination of Thiabendazole Pesticides in Rape by Surface Enhanced Raman Spectroscopy

Thiabendazole is widely used in sclerotium blight, downy mildew and black rot prevention and treatment in rape. Accurate monitoring of thiabendazole pesticides in plants will prevent potential adverse effects to the Environment and human health. Surface Enhanced Raman Spectroscopy (SERS) is a highly sensitive fingerprint with the advantages of simple operation, convenient portability and high detection efficiency. In this paper, a rapid determination method of thiabendazole pesticides in rape was conducted combining SERS with chemometric methods. The original SERS were pretreated and the partial least squares (PLS) was applied to establish the prediction model between SERS and thiabendazole pesticides in rape. As a result, the SERS enhancing effect based on silver Nano-substrate was better than that of gold Nano-substrate, where the detection limit of thiabendazole pesticides in rape could reach 0.1 mg/L. Moreover, 782, 1007 and 1576 cm⁻¹ could be determined as thiabendazole pesticides Raman characteristic peaks in rape. The prediction effect of thiabendazole pesticides in rape was the best (Rp2 = 0.94, RMSEP = 3.17 mg/L) after the original spectra preprocessed with 1st-Derivative, and the linear relevance between thiabendazole pesticides concentration and Raman peak intensity at 782 cm⁻¹ was the highest (R² = 0.91). Furthermore, five rape samples with unknown thiabendazole pesticides concentration were used to verify the accuracy and reliability of this method. It was showed that prediction relative standard deviation was 0.70–9.85%, recovery rate was 94.71–118.92% and t value was −1.489. In conclusion, the thiabendazole pesticides in rape could be rapidly and accurately detected by SERS, which was beneficial to provide a rapid, accurate and reliable scheme for the detection of pesticides residues in agriculture products.

Spectral Analysis and Sensitive Waveband Determination Based on Nitrogen Detection of Different Soil Types Using Near Infrared Sensors

Compared with the chemical analytical technique, the soil nitrogen acquisition method based on near infrared (NIR) sensors shows significant advantages, being rapid, nondestructive, and convenient. Providing an accurate grasp of different soil types, sensitive wavebands could enhance the nitrogen estimation efficiency to a large extent. In this paper, loess, calcium soil, black soil, and red soil were used as experimental samples. The prediction models between soil nitrogen and NIR spectral reflectance were established based on three chemometric methods, that is, partial least squares (PLS), backward interval partial least squares (BIPLS), and back propagation neural network (BPNN). In addition, the sensitive wavebands of four kinds of soils were selected by competitive adaptive reweighted sampling (CARS) and BIPLS. The predictive ability was assessed by the coefficient of determination R² and the root mean square error (RMSE). As a result, loess (0.93<Rp2<0.95,0.066 g/kg<RMSEp<0.075 g/kg) and calcium soil (0.95<Rp2<0.96, 0.080 g/kg<RMSEp<0.102 g/kg) achieved a high prediction accuracy regardless of which algorithm was used, while black soil (0.79<Rp2<0.86, 0.232 g/kg<RMSEp<0.325 g/kg) obtained a relatively lower prediction accuracy caused by the interference of high humus content and strong absorption. The prediction accuracy of red soil (0.86<Rp2<0.87, 0.231 g/kg<RMSEp<0.236 g/kg) was similar to black soil, partly due to the high content of iron–aluminum oxide. Compared with PLS and BPNN, BIPLS performed well in removing noise and enhancing the prediction effect. In addition, the determined sensitive wavebands were 1152 nm–1162 nm and 1296 nm–1309 nm (loess), 1036 nm–1055 nm and 1129 nm–1156 nm (calcium soil), 1055 nm, 1281 nm, 1414 nm–1428 nm and 1472 nm–1493 nm (black soil), 1250 nm, 1480 nm and 1680 nm (red soil). It is of great value to investigate the differences among the NIR spectral characteristics of different soil types and determine sensitive wavebands for the more efficient and portable NIR sensors in practical application.