Hardware design and implementation of a wavelet de-noising procedure for medical signal preprocessing

Automated Medical Care: Bradycardia Detection and Cardiac Monitoring of Preterm Infants

Background and Objectives: Prematurity of birth occurs before the 37th week of gestation and affects up to 10% of births worldwide. It is correlated with critical outcomes; therefore, constant monitoring in neonatal intensive care units or home environments is required. The aim of this work was to develop solutions for remote neonatal intensive supervision systems, which should assist medical diagnosis of premature infants and raise alarm at cardiac abnormalities, such as bradycardia. Additionally, the COVID-19 pandemic has put a worldwide stress upon the medical staff and the management of healthcare units. Materials and Methods: A traditional medical diagnosing scheme was set up, implemented with the aid of powerful mathematical operators. The algorithm was tailored to the infants' personal ECG characteristics and was tested on real ECG data from the publicly available PhysioNet database "Preterm Infant Cardio-Respiratory Signals Database". Different processing problems were solved: noise filtering, baseline drift removal, event detection and compression of medical data using the à trous wavelet transform. Results: In all 10 available clinical cases, the bradycardia events annotated by the physicians were correctly detected using the RR intervals. Compressing the ECG signals for remote transmission, we obtained compression ratios (CR) varying from 1.72 to 7.42, with the median CR value around 3. Conclusions: We noticed that a significant amount of noise can be added to a signal while monitoring using standard clinical sensors. We tried to offer solutions for these technical problems. Recent studies have shown that persons infected with the COVID-19 disease are frequently reported to develop cardiovascular symptoms and cardiac arrhythmias. An automatic surveillance system (both for neonates and adults) has a practical medical application. The proposed algorithm is personalized, no fixed reference value being applied, and the algorithm follows the neonate's cardiac rhythm changes. The performance depends on the characteristics of the input ECG. The signal-to-noise ratio of the processed ECG was improved, with a value of up to 10 dB.

Low Distortion of Noise Filter Realization with 6.34 V/μs Fast Slew Rate and 120 mVp-p Output Noise Signal

In order to reduce Gaussian noise, this paper proposes a method via taking the average of the upper and lower envelopes generated by capturing the high and low peaks of the input signal. The designed fast response filter has no cut-off frequency, so the high order harmonics of the actual signal remain unchanged. Therefore, it can immediately respond to the changes of input signal and retain the integrity of the actual signal. In addition, it has only a small phase delay. The slew rate, phase delay and frequency response can be confirmed from the simulation results of Multisim 13.0. The filter outlined in this article can retain the high order harmonics of the original signal, achieving a slew rate of 6.34 V/μs and an almost zero phase difference. When using our filter to physically test the input signal with a noise level of 3 Vp-p Gaussian noise, a reduced noise signal of 120 mVp-p is obtained. The noise can be suppressed by up to 4% of the raw signal.

A DSP Architecture for Distortion-Free Evoked Compound Action Potential Recovery in Neural Response Telemetry System

This paper presents a digital signal processing (DSP) architecture for real-time and distortion-free recovery of electrically-evoked compound action potentials (ECAPs) from stimulus artifacts and periodic noises in bidirectional neural response telemetry (NRT) system. In this DSP architecture, a low computation-cost bidirectional-filtered coherent averaging (BFCA) method is proposed for programmable linear-phase filtering of ECAPs, which can be easily combined with the alternating-polarity (AP) stimulation method to reject stimulus artifacts overlapped with ECAP responses. Design techniques including the configurable folded infinite-impulse response (IIR) filter and division-free averaging are also presented for efficient hardware implementation. Implemented in 180-nm CMOS process, the proposed DSP architecture consumes 10.03-mm² area and 2.35-mW post-layout simulated power. The efficacy of the DSP architecture in recovering ECAPs from recorded neural data contaminated by overlapped stimulus artifacts and periodic noises is validated in in-vivo electrical nerve stimulations. Experiment results show that compared with the previous coherent averaging technique, the proposed DSP architecture improves the signal-to-noise ratio (SNR) of ECAP responses by 11 dB and achieves a 3.1% waveform distortion that is 17.1× lower.

Application of the Lomb-Scargle Periodogram to InvestigateHeart Rate Variability during Haemodialysis

Short-term cardiovascular compensatory responses to perturbations in the circulatory system caused by haemodialysis can be investigated by the spectral analysis of heart rate variability, thus providing an important variable for categorising individual patients' response, leading to a more personalised treatment. This is typically accomplished by resampling the irregular heart rate to generate an equidistant time series prior to spectral analysis, but resampling can further distort the data series whose interpretation can already be compromised by the presence of artefacts. The Lomb-Scargle periodogram provides a more direct method of spectral analysis as this method is specifically designed for large, irregularly sampled, and noisy datasets such as those obtained in clinical settings. However, guidelines for preprocessing patient data have been established in combination with equidistant time-series methods and their validity when used in combination with the Lomb-Scargle approach is missing from literature. This paper examines the effect of common preprocessing methods on the Lomb-Scargle power spectral density estimate using both real and synthetic heart rate data and will show that many common techniques for identifying and editing suspect data points, particularly interpolation and replacement, will distort the resulting power spectrum potentially misleading clinical interpretations of the results. Other methods are proposed and evaluated for use with the Lomb-Scargle approach leading to the main finding that suspicious data points should be excluded rather than edited, and where required, denoising of the heart rate signal can be reliably accomplished by empirical mode decomposition. Some additional methods were found to be particularly helpful when used in conjunction with the Lomb-Scargle periodogram, such as the use of a false alarm probability metric to establish whether spectral estimates are valid and help automate the assessment of valid heart rate records, potentially leading to greater use of this powerful technique in a clinical setting.

SynSigGAN: Generative Adversarial Networks for Synthetic Biomedical Signal Generation

Automating medical diagnosis and training medical students with real-life situations requires the accumulation of large dataset variants covering all aspects of a patient's condition. For preventing the misuse of patient's private information, datasets are not always publicly available. There is a need to generate synthetic data that can be trained for the advancement of public healthcare without intruding on patient's confidentiality. Currently, rules for generating synthetic data are predefined and they require expert intervention, which limits the types and amount of synthetic data. In this paper, we propose a novel generative adversarial networks (GAN) model, named SynSigGAN, for automating the generation of any kind of synthetic biomedical signals. We have used bidirectional grid long short-term memory for the generator network and convolutional neural network for the discriminator network of the GAN model. Our model can be applied in order to create new biomedical synthetic signals while using a small size of the original signal dataset. We have experimented with our model for generating synthetic signals for four kinds of biomedical signals (electrocardiogram (ECG), electroencephalogram (EEG), electromyography (EMG), photoplethysmography (PPG)). The performance of our model is superior wheen compared to other traditional models and GAN models, as depicted by the evaluation metric. Synthetic biomedical signals generated by our approach have been tested while using other models that could classify each signal significantly with high accuracy.

An IoT Hardware Platform Architecture for Monitoring Power Grid Systems based on Heterogeneous Multi-Sensors

Partial discharge (PD) is a major indicator of various failures in power grid systems. PD exhibits a physical occurrence where a localized electrical discharge happens in insulation materials. This phenomenon causes damage to the insulating parts and, in various circumstances, leads to complete insulation breakdown. As a consequence, it can produce more costly outcomes such as abrupt outages or lost production. Therefore, PD detection plays a vital role in preventing insulation failure. In this work, we propose a system that utilizes heterogeneous sensors for the PD detection along with multi-sensor interface, real-time advanced denoise processing, flexible system operation, and Bluetooth-low-energy (BLE)-based ad hoc communication. Among the variety of heterogeneous sensors, several are developed by the application of nanomaterials and nanotechnology, thus outperforming the regular types. The proposed system successfully identifies the presence of PD from sensor signals using a microprocessor-based processing system and effectively performs an advanced denoising technique based on the wavelet transform through field-programmable-gate-array (FPGA)-based programmable logics. With the development of the system, we aim to achieve a solution with low cost, high flexibility and efficiency, and ease of deployment for the monitoring of power grid systems.

A Sensor for Broken Wire Detection of Steel Wire Ropes Based on the Magnetic Concentrating Principle

Electromagnetic testing is the most widely used technique for the inspection of steel wire ropes. As one of the electromagnetic detecting approaches, the magnetic flux leakage (MFL) method has the best effect for the detection of broken wires. However, existing sensors based on MFL method still have some problems. (1) The size of the permanent magnet exciter is usually designed according to experience or rough calculation, and there is not enough depth analysis for its excitation performance; (2) Since the detectable angular range for a single Hall component is limited, Hall sensor arrays are often employed in the design of MFL sensors, which will increase the complexity of the subsequent signal processing due to the extensive use of Hall components; (3) Although the new magneto-resistance sensor has higher sensitivity, it is difficult to be applied in practice because of the requirement of the micron-level lift-off. To solve these problems, a sensor for the detection of broken wires of steel wire ropes based on the principle of magnetic concentration is developed. A circumferential multi-circuit permanent magnet exciter (CMPME) is employed to magnetize the wire rope to saturation. The traditional Hall sensor array is replaced by a magnetic concentrator to collect MFL. The structural parameters of the CMPME are optimized and the performance of the magnetic concentrator is analyzed by the finite element method. Finally, the effectiveness of the designed sensor is verified by wire breaking experiment. 1–5 external broken wires, handcrafted on the wire rope with a diameter of 24 mm, can be clearly identified, which shows great potential for the inspection of steel wire ropes.

The stationary wavelet transform as an efficient reductor of powerline interference for atrial bipolar electrograms in cardiac electrophysiology

OBJECTIVE

The most relevant source of signal contamination in the cardiac electrophysiology (EP) laboratory is the ubiquitous powerline interference (PLI). To reduce this perturbation, algorithms including common fixed-bandwidth and adaptive-notch filters have been proposed. Although such methods have proven to add artificial fractionation to intra-atrial electrograms (EGMs), they are still frequently used. However, such morphological alteration can conceal the accurate interpretation of EGMs, specially to evaluate the mechanisms supporting atrial fibrillation (AF), which is the most common cardiac arrhythmia. Given the clinical relevance of AF, a novel algorithm aimed at reducing PLI on highly contaminated bipolar EGMs and, simultaneously, preserving their morphology is proposed.

APPROACH

The method is based on the wavelet shrinkage and has been validated through customized indices on a set of synthesized EGMs to accurately quantify the achieved level of PLI reduction and signal morphology alteration. Visual validation of the algorithm's performance has also been included for some real EGM excerpts.

MAIN RESULTS

The method has outperformed common filtering-based and wavelet-based strategies in the analyzed scenario. Moreover, it possesses advantages such as insensitivity to amplitude and frequency variations in the PLI, and the capability of joint removal of several interferences.

SIGNIFICANCE

The use of this algorithm in routine cardiac EP studies may enable improved and truthful evaluation of AF mechanisms.

Fault Detection of a Spherical Tank Using a Genetic Algorithm-Based Hybrid Feature Pool and k-Nearest Neighbor Algorithm

Fault detection in metallic structures requires a detailed and discriminative feature pool creation mechanism to develop an effective condition monitoring system. Traditional fault detection methods incorporate handcrafted features either from the time, frequency or time-frequency domains. To explore the salient information provided by the acoustic emission (AE) signals, a hybrid of feature pool creation and an optimal features subset selection mechanism is proposed for crack detection in a spherical tank. The optimal hybrid feature pool creation process is composed of two major parts: (1) extraction of statistical features from time and frequency domains, as well as extraction of traditional features associated with the AE signals; and (2) genetic algorithm (GA)-based optimal features subset selection. The optimal features subset is then provided to the k-nearest neighbor (k-NN) classifier to distinguish between normal (NC) and crack conditions (CC). Experimental results show that the proposed approach yields an average 99.8% accuracy for heath state classification. To validate the effectiveness of the proposed approach, it is compared to conventional non-linear dimensionality reduction techniques, as well as those without feature selection schemes. Experimental results show that the proposed approach outperforms conventional non-linear dimensionality reduction techniques, achieving at least 2.55% higher classification accuracy.

Improving the Performance of Storage Tank Fault Diagnosis by Removing Unwanted Components and Utilizing Wavelet-Based Features

This paper proposes a reliable fault diagnosis model for a spherical storage tank. The proposed method first used a blind source separation (BSS) technique to de-noise the input signals so that the signals acquired from a spherical tank under two types of conditions (i.e., normal and crack conditions) were easily distinguishable. BSS split the signals into different sources that provided information about the noise and useful components of the signals. Therefore, an unimpaired signal could be restored from the useful components. From the de-noised signals, wavelet-based fault features, i.e., the relative energy (REWPN) and entropy (EWPN) of a wavelet packet node, were extracted. Finally, these features were used to train one-against-all multiclass support vector machines (OAA MCSVMs), which classified the instances of normal and faulty states of the tank. The efficiency of the proposed fault diagnosis model was examined by visualizing the de-noised signals obtained from the BSS method and its classification performance. The proposed fault diagnostic model was also compared to existing techniques. Experimental results showed that the proposed method outperformed conventional techniques, yielding average classification accuracies of 97.25% and 98.48% for the two datasets used in this study.

Two-stage motion artefact reduction algorithm for electrocardiogram using weighted adaptive noise cancelling and recursive Hampel filter

The presence of motion artefacts in ECG signals can cause misleading interpretation of cardiovascular status. Recently, reducing the motion artefact from ECG signal has gained the interest of many researchers. Due to the overlapping nature of the motion artefact with the ECG signal, it is difficult to reduce motion artefact without distorting the original ECG signal. However, the application of an adaptive noise canceler has shown that it is effective in reducing motion artefacts if the appropriate noise reference that is correlated with the noise in the ECG signal is available. Unfortunately, the noise reference is not always correlated with motion artefact. Consequently, filtering with such a noise reference may lead to contaminating the ECG signal. In this paper, a two-stage filtering motion artefact reduction algorithm is proposed. In the algorithm, two methods are proposed, each of which works in one stage. The weighted adaptive noise filtering method (WAF) is proposed for the first stage. The acceleration derivative is used as motion artefact reference and the Pearson correlation coefficient between acceleration and ECG signal is used as a weighting factor. In the second stage, a recursive Hampel filter-based estimation method (RHFBE) is proposed for estimating the ECG signal segments, based on the spatial correlation of the ECG segment component that is obtained from successive ECG signals. Real-World dataset is used to evaluate the effectiveness of the proposed methods compared to the conventional adaptive filter. The results show a promising enhancement in terms of reducing motion artefacts from the ECG signals recorded by a cost-effective single lead ECG sensor during several activities of different subjects.

Adaptive Noise Reduction Algorithm to Improve R Peak Detection in ECG Measured by Capacitive ECG Sensors

Electrocardiograms (ECGs) can be conveniently obtained using capacitive ECG sensors. However, motion noise in measured ECGs can degrade R peak detection. To reduce noise, properties of reference signal and ECG measured by the sensors are analyzed and a new method of active noise cancellation (ANC) is proposed in this study. In the proposed algorithm, the original ECG signal at QRS interval is regarded as impulsive noise because the adaptive filter updates its weight as if impulsive noise is added. As the proposed algorithm does not affect impulsive noise, the original signal is not reduced during ANC. Therefore, the proposed algorithm can conserve the power of the original signal within the QRS interval and reduce only the power of noise at other intervals. The proposed algorithm was verified through comparisons with recent research using data from both indoor and outdoor experiments. The proposed algorithm will benefit a noise reduction of noisy biomedical signal measured from sensors.

ECG Signal De-noising and Baseline Wander Correction Based on CEEMDAN and Wavelet Threshold

A novel electrocardiogram (ECG) signal de-noising and baseline wander correction method based on complete ensemble empirical mode decomposition with adaptive noise (CEEMDAN) and wavelet threshold is proposed. Although CEEMDAN is based on empirical mode decomposition (EMD), it represents a significant improvement of the original EMD by overcoming the mode-mixing problem. However, there has been no previous study on using CEEMDAN to de-noise ECG signals, to the authors’ best knowledge. In the proposed method, the original noisy ECG signal is decomposed into a series of intrinsic mode functions (IMFs) sorted from high to low frequency by CEEMDAN. Each IMF is then analyzed by the autocorrelation method to find out the first few high frequency IMFs containing random noise, and these IMFs should be de-noised by the wavelet threshold. The zero-crossing rate (ZCR) of all IMFs, including final residue, are computed, and the IMFs with ZCR less than a certain value are removed. Finally, the remaining IMFs are reconstructed to obtain the clean ECG signal. The proposed algorithm is validated through experiments using the MIT–BIH ECG databases, and the results show that the random noise in the ECG signal can be effectively suppressed, and at the same time the baseline wander can be corrected efficiently.

Waveform Integrity in Atrial Fibrillation: The Forgotten Issue of Cardiac Electrophysiology

Atrial fibrillation (AF) is the most common arrhythmia in clinical practice with an increasing prevalence of about 15% in the elderly. Despite other alternatives, catheter ablation is currently considered as the first-line therapy for the treatment of AF. This strategy relies on cardiac electrophysiology systems, which use intracardiac electrograms (EGM) as the basis to determine the cardiac structures contributing to sustain the arrhythmia. However, the noise-free acquisition of these recordings is impossible and they are often contaminated by different perturbations. Although suppression of nuisance signals without affecting the original EGM pattern is essential for any other later analysis, not much attention has been paid to this issue, being frequently considered as trivial. The present work introduces the first thorough study on the significant fallout that regular filtering, aimed at reducing acquisition noise, provokes on EGM pattern morphology. This approach has been compared with more refined denoising strategies. Performance has been assessed both in time and frequency by well established parameters for EGM characterization. The study comprised synthesized and real EGMs with unipolar and bipolar recordings. Results reported that regular filtering altered substantially atrial waveform morphology and was unable to remove moderate amounts of noise, thus turning time and spectral characterization of the EGM notably inaccurate. Methods based on Wavelet transform provided the highest ability to preserve EGM morphology with improvements between 20 and beyond 40%, to minimize dominant atrial frequency estimation error with up to 25% reduction, as well as to reduce huge levels of noise with up to 10 dB better reduction. Consequently, these algorithms are recommended as a replacement of regular filtering to avoid significant alterations in the EGMs. This could lead to more accurate and truthful analyses of atrial activity dynamics aimed at understanding and locating the sources of AF.

A Small Leak Detection Method Based on VMD Adaptive De-Noising and Ambiguity Correlation Classification Intended for Natural Gas Pipelines

In this study, a small leak detection method based on variational mode decomposition (VMD) and ambiguity correlation classification (ACC) is proposed. The signals acquired from sensors were decomposed using the VMD, and numerous components were obtained. According to the probability density function (PDF), an adaptive de-noising algorithm based on VMD is proposed for noise component processing and de-noised components reconstruction. Furthermore, the ambiguity function image was employed for analysis of the reconstructed signals. Based on the correlation coefficient, ACC is proposed to detect the small leak of pipeline. The analysis of pipeline leakage signals, using 1 mm and 2 mm leaks, has shown that proposed detection method can detect a small leak accurately and effectively. Moreover, the experimental results have shown that the proposed method achieved better performances than support vector machine (SVM) and back propagation neural network (BP) methods.

Embedded Implementation of VHR Satellite Image Segmentation

Processing and analysis of Very High Resolution (VHR) satellite images provide a mass of crucial information, which can be used for urban planning, security issues or environmental monitoring. However, they are computationally expensive and, thus, time consuming, while some of the applications, such as natural disaster monitoring and prevention, require high efficiency performance. Fortunately, parallel computing techniques and embedded systems have made great progress in recent years, and a series of massively parallel image processing devices, such as digital signal processors or Field Programmable Gate Arrays (FPGAs), have been made available to engineers at a very convenient price and demonstrate significant advantages in terms of running-cost, embeddability, power consumption flexibility, etc. In this work, we designed a texture region segmentation method for very high resolution satellite images by using the level set algorithm and the multi-kernel theory in a high-abstraction C environment and realize its register-transfer level implementation with the help of a new proposed high-level synthesis-based design flow. The evaluation experiments demonstrate that the proposed design can produce high quality image segmentation with a significant running-cost advantage.

Reduction of Motion Artifacts and Improvement of R Peak Detecting Accuracy Using Adjacent Non-Intrusive ECG Sensors

Non-intrusive electrocardiogram (ECG) monitoring has many advantages: easy to measure and apply in daily life. However, motion noise in the measured signal is the major problem of non-intrusive measurement. This paper proposes a method to reduce the noise and to detect the R peaks of ECG in a stable manner in a sitting arrangement using non-intrusive sensors. The method utilizes two capacitive ECG sensors (cECGs) to measure ECG, and another two cECGs located adjacent to the sensors for ECG are added to obtain the information on motion. Then, active noise cancellation technique and the motion information are used to reduce motion noise. To verify the proposed method, ECG was measured indoors and during driving, and the accuracy of the detected R peaks was compared. After applying the method, the sum of sensitivity and positive predictivity increased 8.39% on average and 26.26% maximally in the data. Based on the results, it was confirmed that the motion noise was reduced and that more reliable R peak positions could be obtained by the proposed method. The robustness of the new ECG measurement method will elicit benefits to various health care systems that require noninvasive heart rate or heart rate variability measurements.