Quencher-Free Fluorescence Method for the Detection of Mercury(II) Based on Polymerase-Aided Photoinduced Electron Transfer Strategy

Advances in mercury ion sensing using BODIPY-based compounds: a sexennial update

Pollution from mercury ions (Hg2+) continues to pose a significant threat to the environment and public health because of its extreme toxicity and bioaccumulative nature. BODIPY-based compounds are emerging as strong candidates for creating selective and sensitive chemosensors for mercury ion detection. Their structural tunability facilitates the introduction of various functional groups, improving their binding affinity and specificity toward mercury ions. This review elucidates various sensing mechanisms and provides comprehensive insights into the performance of these sensors, particularly with regard to selectivity, sensitivity, and detection limits. The synthetic routes for synthesizing the chemosensors are mentioned in detail. Given their reliability and flexibility, BODIPY-based sensors are poised to make significant contributions in the fields of both sensors and analytical chemistry.

An Efficient Fluorescent Chemosensing Probe for Total Determination and Speciation of Ultra-Trace Levels of Mercury (II) Species in Water

The current study reports a novel fluorescent chemosensor based on the tagging agent 4,5,6,7-tetrachloro-2',4',5',7'-tetraiodofluorescein (Rose Bengal, RB) for detection of trace levels of Hg2+in environmental water. The established probe has been based upon liquid-liquid extraction (LLE) of the developed ternary complex ion associate {[Hg (bpy)2]2+.[RB]2-} of Hg2+ -2,2- bipyridyl complex [Hg (bpy)2]2+ and RB at pH 9.0 onto chloroform and measuring the resulting fluorescence enhancement signal intensity at λex/em = 570/ (580-600) nm. The limits of detection (LOD) and quantification (LOQ) of for Hg2+ was calculated to be 6.06 and 20 nM with a linear dynamic range (LDR) of 0.02-20µM, respectively. The stability constant, stoichiometry, chemical equilibria, and the thermodynamic parameters (ΔH, ΔS, and ΔG) of the developed ion associate were evaluated and assigned. Student's t and F tests at 95% confidence were fruitfully used for validation of the proposed methodology for Hg2+ detection in water samples with the aid of inductively coupled plasma-optical emission spectrometry (ICP-OES). The established strategy was successfully applied for detection of trace levels of Hg2+ in water samples with acceptable results. The proposed probe was satisfactorily applied for total determination and speciation of Hg in various water samples. Integrating the functional chelating agent onto associate formation to improve the selectivity and sensing properties of the LLE combining sensing probe towards target analyte in water represent the main interest.

Detection of ochratoxin A using a "turn-on" fluorescence assay based on guanine quenching of the aptamer

Ochratoxin A (OTA) is a common mycotoxin with high carcinogenicity; therefore, it is crucial to establish a simple, rapid, and sensitive method for its detection. In this study, we developed a "turn-on" fluorescence assay for detecting OTA based on guanine quenching of the aptamer. The method uses fluorescein (FAM) fluorophore to label the complementary strand of the OTA aptamer, Fc-DNA. In the absence of OTA, the Fc-DNA hybridizes with the aptamer to form a double strand. Due to the occurrence of photo-induced electron transfer (PET), the FAM fluorescence signal is quenched as the FAM on the Fc-DNA approaches the guanine of the aptamer at the 5' end. When OTA is present, the aptamer binds to it and thus, is unable to hybridize with Fc-DNA to form a double strand; the FAM fluorescence signal is restored as FAM moves away from the guanine of the aptamer. The assay achieved OTA detection at a detection limit of 28.4 nM. The application of the original guanine of the aptamer as the quenching agent helps avoid the complex designing and labeling of the aptamer, which ensures the high affinity of the aptamer for OTA. Meanwhile, this "turn-on" detection mode helps avoid potential false-positive results as in the "turn-off" mode and improves the assay's sensitivity. Additionally, the method has good selectivity and can be used to detect OTA in traditional Chinese medicine. This method provides a simple, low-cost, and rapid method for OTA detection.

Design of a Quencher-Free Fluorescent Aptasensor for Ochratoxin A Detection in Red Wine Based on the Guanine-Quenching Ability

This study describes a quencher-free fluorescent aptasensor for ochratoxin A (OTA) detection using the specific quenching ability of guanine for fluorescein (FAM) molecules based on photo-induced electron transfer (PIET). In this strategy, OTA is detected by monitoring the fluorescence change induced by the conformational change of the aptamer after target binding. A new shorter OTA aptamer compromising three guanine bases at the 5' end was used in this study. This new aptamer, named G3-OTAapt1-FAM (F1), was labeled with FAM on the 3' end as a fluorophore. In order to increase the binding affinity of the aptamer and OTA, G3-OTAapt2-FAM (F2) was designed; this added a pair of complementary bases at the end compared with F1. To prevent the strong self-quenching of F2, a complementary chain, A13, was added. Although the F1 aptasensor was simpler to implement, the sensitivity of the F2 aptasensor with A13 was better than that of F1. The proposed F1 and F2 sensors can detect OTA with a concentration as low as 0.69 nmol/L and 0.36 nmol/L, respectively.

Fluorescence Anisotropy as a Temperature-Sensing Molecular Probe Using Fluorescein

Fluorescence anisotropy, a technique to study the folding state of proteins or affinity of ligands, is used in this present work as a temperature sensor, to measure the microfluidic temperature field, by adding fluorophore in the liquid. Fluorescein was used as a temperature-sensing probe, while glycerol-aq. ammonia solution was used as a working fluid. Fluorescence anisotropy of fluorescein was measured by varying various parameters. Apart from this, a comparison of fluorescence anisotropy and fluorescence intensity is also performed to demonstrate the validity of anisotropy to be applied in a microfluidic field with non-uniform liquid thickness. Viscosity dependence and temperature dependence on the anisotropy are also clarified; the results indicate an appropriate selection of relation between molecule size and viscosity is important to obtain a large temperature coefficient in anisotropy. Furthermore, a practical calibration procedure of the apparatus constant is proposed. In addition, the potential of temperature imaging is confirmed by the measurement of temperature distribution under focused laser heating.

Organomercury Nucleic Acids: Past, Present and Future

Synthetic efforts towards nucleosides, nucleotides, oligonucleotides and nucleic acids covalently mercurated at one or more of their base moieties are summarized, followed by a discussion of the proposed, realized and abandoned applications of this unique class of compounds. Special emphasis is given to fields in which active research is ongoing, notably the use of HgII -mediated base pairing to improve the hybridization properties of oligonucleotide probes. Finally, this minireview attempts to anticipate potential future applications of organomercury nucleic acids.

A review on nanostructure-based mercury (II) detection and monitoring focusing on aptamer and oligonucleotide biosensors

Heavy metal ion pollution is a severe problem in environmental protection and especially in human health due to their bioaccumulation in organisms. Mercury (II) (Hg²⁺), even at low concentrations, can lead to DNA damage and give permanent harm to the central nervous system by easily passing through biological membranes. Therefore, sensitive detection and monitoring of Hg²⁺ is of particular interest with significant specificity. In this review, aptamer-based strategies in combination with nanostructures as well as several other strategies to solve addressed problems in sensor development for Hg²⁺ are discussed in detail. In particular, the analytical performance of different aptamer and oligonucleotide-based strategies using different signal improvement approaches based on nanoparticles were compared within each strategy and in between. Although quite a number of the suggested methodologies analyzed in this review fulfills the standard requirements, further development is still needed on real sample analysis and analytical performance parameters.

Detection of coralyne and heparin by polymerase extension reaction using SYBR Green I

Polydeoxyadenosine (poly (dA)) has been extensively applied for detecting many drug molecules. Herein, we developed a sensitive method for detecting coralyne and heparin using a modified DNA probe with poly (dA) at one end. In the absence of coralyne, the DNA probe was digested by the Exonuclease I (Exo I), and therefore the SYBR Green I (SG I) emitted an extremely low fluorescent signal. While coralyne specifically binding to poly (dA) with strong propensity could remarkably restrain the disintegration of the DNA probe, through which as a template the second strand of DNA sequence was formed with the introduction of DNA polymerase. Therefore, the fluorescent signal of SG I was intensified to quantify coralyne. Based on this method, heparin can be determined due to its strong affinity towards coralyne. This method showed a linear range from 2 to 500 nM for coralyne with a low detection limit of 0.98 nM, and the linear range of heparin was from 1 to 100 nM when 1.25 nm was the detection limit. The proposed method was also implemented successfully in biological samples and showed a potential application for screening potential therapeutic molecules.

An Anthracene Excimer Fluorescence Probe on Mesoporous Silica for Dual Functions of Detection and Adsorption of Mercury (II) and Copper (II) with Biological In Vivo Applications

Dual functional activity by the same organic-inorganic hybrid material toward selective metal ion detection and its adsorption has drawn more attraction in the field of sensing. However, most of the hybrid materials in the literature are either for sensing studies or adsorption studies. In this manuscript, a fluorescent active hybrid material SiO₂ @PBATPA is synthesized by covalent coupling of anthracene-based chelating ligand N,N'-(propane-1,3-diyl) bis(N-(anthracen-9-ylmethyl)-2-((3-(triethoxysilyl)propyl) amino) acetamide) (PBATPA) within the mesopores of newly synthesized cubic mesoporous silica. The synthetic strategy is designed to form an exclusively intramolecular excimer on a solid surface, which is then used as a sensory tool for selective detection of metal ions through fluorescence quenching by the destruction of excimer upon metal ion binding. The dual functions of sensing and adsorption studies show selectivity toward Hg²⁺ and Cu²⁺ among various metal ions with detection limits of 37 and 6 ppb, respectively, and adsorption capacities of 482 and 246 mg g^-1 , respectively. This material can be used as a sensory cum adsorbent material in real food samples and living organisms such as the brine shrimp Artemia salina without any toxic effects from the material.

Aptamer-Based Fluorometric Ochratoxin A Assay Based on Photoinduced Electron Transfer

This study describes a novel quencher-free fluorescent method for ochratoxin A (OTA) detection based on the photoinduced electron transfer (PIET) between guanine and fluorophore. In the absence of OTA, carboxyfluorescein (FAM)-labeled aptamer can partly hybridize with the complementary strand of OTA aptamer (OTA-cAPT), which contains four guanines at its 3′-end. As a result, the fluorescence of FAM is quenched due to PIET and stacked guanines. In the presence of OTA, FAM-labeled OTA aptamer can bind specifically to OTA, and thereby the high fluorescence intensity of the dye can be maintained. Under the optimal conditions, the method had a detection limit of 1.3 nM. In addition, the method we proposed is highly sensitive and specific for OTA. Furthermore, the method was proven to be reliable based on its successful application in the detection of OTA in red wine samples. Therefore, this promising, facile, and quencher-free method may be applied to detect other toxins by using other appropriate aptamers.

Highly Sensitive and Selective Colorimetric Detection of Methylmercury Based on DNA Functionalized Gold Nanoparticles

A new colorimetric detection of methylmercury (CH₃Hg⁺) was developed, which was based on the surface deposition of Hg enhancing the catalytic activity of gold nanoparticles (AuNPs). The AuNPs were functionalized with a specific DNA strand (H_T7) recognizing CH₃Hg⁺, which was used to capture and separate CH₃Hg⁺ by centrifugation. It was found that the CH₃Hg⁺ reduction resulted in the deposition of Hg onto the surface of AuNPs. As a result, the catalytic activity of the AuNPs toward the chromogenic reaction of 3,3,5,5-tetramethylbenzidine (TMB)-H₂O₂ was remarkably enhanced. Under optimal conditions, a limit of detection of 5.0 nM was obtained for CH₃Hg⁺ with a linear range of 10–200 nM. We demonstrated that the colorimetric method was fairly simple with a low cost and can be conveniently applied to CH₃Hg⁺ detection in environmental samples.