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Monchatre-Leroy E, Sauvage F, Boué F, Augot D, Marianneau P, Hénaux V, Crespin L. Prevalence and Incidence of Puumala Orthohantavirus in its Bank Vole (Myodes glareolus) Host Population in Northeastern France: Between-site and Seasonal Variability. Epidemics 2022; 40:100600. [DOI: 10.1016/j.epidem.2022.100600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 05/02/2022] [Accepted: 06/14/2022] [Indexed: 11/03/2022] Open
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Szabó R, Radosa L, Ličková M, Sláviková M, Heroldová M, Stanko M, Pejčoch M, Osterberg A, Laenen L, Schex S, Ulrich RG, Essbauer S, Maes P, Klempa B. Phylogenetic analysis of Puumala virus strains from Central Europe highlights the need for a full-genome perspective on hantavirus evolution. Virus Genes 2017; 53:913-917. [PMID: 28664467 DOI: 10.1007/s11262-017-1484-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2017] [Accepted: 06/21/2017] [Indexed: 11/25/2022]
Abstract
Puumala virus (PUUV), carried by bank voles (Myodes glareolus), is the medically most important hantavirus in Central and Western Europe. In this study, a total of 523 bank voles (408 from Germany, 72 from Slovakia, and 43 from Czech Republic) collected between the years 2007-2012 were analyzed for the presence of hantavirus RNA. Partial PUUV genome segment sequences were obtained from 51 voles. Phylogenetic analyses of all three genome segments showed that the newfound strains cluster with other Central and Western European PUUV strains. The new sequences from Šumava (Bohemian Forest), Czech Republic, are most closely related to the strains from the neighboring Bavarian Forest, a known hantavirus disease outbreak region. Interestingly, the Slovak strains clustered with the sequences from Bohemian and Bavarian Forests only in the M but not S segment analyses. This well-supported topological incongruence suggests a segment reassortment event or, as we analyzed only partial sequences, homologous recombination. Our data highlight the necessity of sequencing all three hantavirus genome segments and of a broader bank vole screening not only in recognized endemic foci but also in regions with no reported human hantavirus disease cases.
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Affiliation(s)
- Róbert Szabó
- Biomedical Research Center, Institute of Virology, Slovak Academy of Sciences, Bratislava, Slovakia
- Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
- Department of Biomedical Sciences, University of Cagliari, Monserrato, CA, Italy
| | - Lukáš Radosa
- Institute of Virology, Charité University Hospital, Helmut-Ruska-Haus, Berlin, Germany
- Department of Infectious Diseases, Faculty of Life Sciences and Medicine, King's College London, London, UK
| | - Martina Ličková
- Biomedical Research Center, Institute of Virology, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Monika Sláviková
- Biomedical Research Center, Institute of Virology, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Marta Heroldová
- Department of Forest Ecology, Mendel University in Brno, Brno, Czech Republic
| | - Michal Stanko
- Institute of Parasitology, Slovak Academy of Sciences, Košice, Slovakia
| | - Milan Pejčoch
- National Institute of Public Health, Prague, Czech Republic
| | - Anja Osterberg
- Department of Virology & Rickettsiology, Bundeswehr Institute of Microbiology, Munich, Germany
| | - Lies Laenen
- Division of Clinical and Epidemiological Virology, Zoonotic Infectious Diseases Unit, KU Leuven, Rega Institute, Leuven, Belgium
| | - Susanne Schex
- Department of Virology & Rickettsiology, Bundeswehr Institute of Microbiology, Munich, Germany
| | - Rainer G Ulrich
- Institute for Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Sandra Essbauer
- Department of Virology & Rickettsiology, Bundeswehr Institute of Microbiology, Munich, Germany
| | - Piet Maes
- Division of Clinical and Epidemiological Virology, Zoonotic Infectious Diseases Unit, KU Leuven, Rega Institute, Leuven, Belgium
| | - Boris Klempa
- Biomedical Research Center, Institute of Virology, Slovak Academy of Sciences, Bratislava, Slovakia.
- Institute of Virology, Charité University Hospital, Helmut-Ruska-Haus, Berlin, Germany.
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Obiegala A, Woll D, Karnath C, Silaghi C, Schex S, Eßbauer S, Pfeffer M. Prevalence and Genotype Allocation of Pathogenic Leptospira Species in Small Mammals from Various Habitat Types in Germany. PLoS Negl Trop Dis 2016; 10:e0004501. [PMID: 27015596 PMCID: PMC4807814 DOI: 10.1371/journal.pntd.0004501] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 02/08/2016] [Indexed: 12/11/2022] Open
Abstract
Small mammals serve as most important reservoirs for Leptospira spp., the causative agents of Leptospirosis, which is one of the most neglected and widespread zoonotic diseases worldwide. The knowledge about Leptospira spp. occurring in small mammals from Germany is scarce. Thus, this study's objectives were to investigate the occurrence of Leptospira spp. and the inherent sequence types in small mammals from three different study sites: a forest in southern Germany (site B1); a National Park in south-eastern Germany (site B2) and a renaturalised area, in eastern Germany (site S) where small mammals were captured. DNA was extracted from kidneys of small mammals and tested for Leptospira spp. by real-time PCR. Positive samples were further analysed by duplex and conventional PCRs. For 14 positive samples, multi locus sequence typing (MLST) was performed. Altogether, 1213 small mammals were captured: 216 at site B1, 456 at site B2 and 541 at site S belonging to following species: Sorex (S.) araneus, S. coronatus, Apodemus (A.) flavicollis, Myodes glareolus, Microtus (Mi.) arvalis, Crocidura russula, Arvicola terrestris, A. agrarius, Mustela nivalis, Talpa europaea, and Mi. agrestis. DNA of Leptospira spp. was detected in 6% of all small mammals. At site B1, 25 small mammals (11.6%), at site B2, 15 small mammals (3.3%) and at site S, 33 small mammals (6.1%) were positive for Leptospira spp. Overall, 54 of the positive samples were further determined as L. kirschneri, nine as L. interrogans and four as L. borgpetersenii while five real-time PCR-positive samples could not be further determined by conventional PCR. MLST results revealed focal occurrence of L. interrogans and L. kirschneri sequence type (ST) 117 while L. kirschneri ST 110 was present in small mammals at all three sites. Further, this study provides evidence for a particular host association of L. borgpetersenii to mice of the genus Apodemus.
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Affiliation(s)
- Anna Obiegala
- Comparative Tropical Medicine and Parasitology, Ludwig-Maximilians-Universität München, Munich, Germany
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, Leipzig, Germany
- * E-mail:
| | - Dietlinde Woll
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, Leipzig, Germany
| | - Carolin Karnath
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, Leipzig, Germany
| | - Cornelia Silaghi
- Comparative Tropical Medicine and Parasitology, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Susanne Schex
- Department of Virology and Rickettsiology, Bundeswehr Institute of Microbiology, Munich, Germany
| | - Sandra Eßbauer
- Department of Virology and Rickettsiology, Bundeswehr Institute of Microbiology, Munich, Germany
| | - Martin Pfeffer
- Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, Leipzig, Germany
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Monchatre-Leroy E, Crespin L, Boué F, Marianneau P, Calavas D, Hénaux V. Spatial and Temporal Epidemiology of Nephropathia Epidemica Incidence and Hantavirus Seroprevalence in Rodent Hosts: Identification of the Main Environmental Factors in Europe. Transbound Emerg Dis 2016; 64:1210-1228. [PMID: 26996739 DOI: 10.1111/tbed.12494] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Indexed: 01/05/2023]
Abstract
In Europe, the increasing number of nephropathia epidemica (NE) infections in humans, caused by Puumala virus carried by bank voles (Myodes glareolus), has triggered studies of environmental factors driving these infections. NE infections have been shown to occur in specific geographical areas characterized by environmental factors that influence the distribution and dynamics of host populations and virus persistence in the soil. Here, we review the influence of environmental conditions (including climate factors, food availability and habitat conditions) with respect to incidence in humans and seroprevalence in rodents, considering both direct and indirect transmission pathways. For each type of environmental factor, results and discrepancies between studies are presented and examined in the light of biological hypotheses. Overall, food availability and temperature appear to be the main drivers of host seroprevalence and NE incidence, but data quality and statistical approaches varied greatly among studies. We highlight the issues that now need to be addressed and suggest improvements for study design in regard to the current knowledge on hantavirus epidemiology.
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Affiliation(s)
| | - L Crespin
- INRA, UR346 d'Epidémiologie Animale, F63122 Saint Genès Champanelle, Université de Lyon, Lyon, France.,Université Lyon 1, Lyon, France.,CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
| | - F Boué
- Laboratoire de la rage et de la faune sauvage, ANSES, Nancy, France
| | - P Marianneau
- Unité de virologie, Laboratoire de Lyon, ANSES, Lyon, France
| | - D Calavas
- Unité d'épidémiologie, Laboratoire de Lyon, ANSES, Lyon, France
| | - V Hénaux
- Unité d'épidémiologie, Laboratoire de Lyon, ANSES, Lyon, France
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Magnusson M, Ecke F, Khalil H, Olsson G, Evander M, Niklasson B, Hörnfeldt B. Spatial and temporal variation of hantavirus bank vole infection in managed forest landscapes. Ecosphere 2015. [DOI: 10.1890/es15-00039.1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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