1
|
Artunç T, Çetinkaya Y, Taslimi P, Menzek A. Investigation of cholinesterase and α-glucosidase enzyme activities, and molecular docking and dft studies for 1,2-disubstituted cyclopentane derivatives with phenyl and benzyl units. Mol Divers 2025; 29:1305-1321. [PMID: 38976121 PMCID: PMC11909056 DOI: 10.1007/s11030-024-10911-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 06/06/2024] [Indexed: 07/09/2024]
Abstract
Six known products (4-9) were prepared from reaction of adipoyl chloride with 1,2,3-trimethoxybenzene according to the literature. From (2,3,4-trimethoxyphenyl)(2-(2,3,4-trimethoxyphenyl)cyclopent-1-en-1-yl)methanone (4) of them, four new 1,2-disubstituted cyclopentane derivatives (10-13) with phenyl and benzyl units were synthesized by reactions such as hydrazonation, catalytic hydrogenation and bromination. The obtained compounds 4-13 were examined for their in vitro inhibitory activity against acetylcholinesterase (AChE), butyrylcholinesterase (BChE) and α-glucosidase enzymes. All compounds 4-13 showed inhibition at nanomolar level with Ki values in the range of 45.53 ± 7.35-631.96 ± 18.88 nM for AChE, 84.30 ± 9.92-622.10 ± 35.14 nM for BChE, and 25.47 ± 4.46-48.87 ± 7.33 for α-Glu. In silico molecular docking studies of the potent compounds were performed in the active sites of AChE (PDB: 1E66), BChE (PDB: 1P0I), and α-glucosidase (PDB: 5ZCC) to compare the effect of bromine atom on the inhibition mechanism. The optimized molecular structures, HOMO-LUMO energies and molecular electrostatic potential maps for the compounds were calculated by using density functional theory with B3LYP/6-31 + G(d,p).
Collapse
Affiliation(s)
- Tekin Artunç
- Department of Chemistry, Faculty of Science, Atatürk University, 25240, Erzurum, Turkey
| | - Yasin Çetinkaya
- Department of Chemistry, Faculty of Science, Atatürk University, 25240, Erzurum, Turkey.
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, 74100, Bartin, Turkey.
| | - Abdullah Menzek
- Department of Chemistry, Faculty of Science, Atatürk University, 25240, Erzurum, Turkey.
- Department of Emergency Aid and Disaster Management, Faculty of Health Sciences, Ardahan University, 75002, Ardahan, Turkey.
| |
Collapse
|
2
|
Olgun ME, Menzek A, Şahin E, Çetinkaya Y. Synthesis and photooxygenation of 3-( p-substituted phenyl)-3a,8a-dihydro- 4H-cyclohepta[d]isoxazoles: facial selectivity. Turk J Chem 2024; 48:691-700. [PMID: 39296785 PMCID: PMC11407366 DOI: 10.55730/1300-0527.3688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 08/20/2024] [Accepted: 05/28/2024] [Indexed: 09/21/2024] Open
Abstract
Two 3-(p-substituted phenyl)-3a,8a-dihydro-4H-cyclohepta[d]isoxazoles were synthesized by 1,3-dipolar cycloaddition of the corresponding nitrile oxides with cycloheptatriene. Two endoperoxides were synthesized as facially selective and single products in high yields (93%-95%) from the reactions of isoxazole derivatives with singlet oxygen. The exact configurations of the endoperoxide with a methyl group in the phenyl ring and the diol synthesized from it were confirmed by X-ray analysis. To elucidate the mechanism, the formation energy of the endoperoxide was investigated by simulations using the software package Gaussian 09 and density functional theory calculations via the M06-2X/6-311+G(d,p) level method in dichloromethane. The results were consistent with experimental findings showing the formation of isoxazole products.
Collapse
Affiliation(s)
- Mahire Emel Olgun
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
| | - Abdullah Menzek
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
- Department of Emergency Aid and Disaster Management, Faculty of Health Sciences, Ardahan University, Ardahan, Turkiye
| | - Ertan Şahin
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
| | - Yasin Çetinkaya
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
| |
Collapse
|
3
|
Özcan E, Vagolu SK, Gündüz MG, Stevanovic M, Kökbudak Z, Tønjum T, Nikodinovic-Runic J, Çetinkaya Y, Doğan ŞD. Novel Quinoline-Based Thiosemicarbazide Derivatives: Synthesis, DFT Calculations, and Investigation of Antitubercular, Antibacterial, and Antifungal Activities. ACS OMEGA 2023; 8:40140-40152. [PMID: 37929089 PMCID: PMC10620885 DOI: 10.1021/acsomega.3c03018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 09/12/2023] [Indexed: 11/07/2023]
Abstract
The discovery of new antimicrobial agents as a means of treating drug-resistant microbial pathogens is of utmost significance to overcome their immense risk to human well-being. The current investigation involves the development, synthesis, and assessment of the antimicrobial efficacy of novel quinoline derivatives incorporating a thiosemicarbazide functionality. To design the target compounds (QST1-QST14), we applied the molecular hybridization approach to link various thiosemicarbazides to the quinoline core with a sulfonyl group. Upon the synthesis and completion of structural characterization via spectroscopic techniques (1H NMR, 13C NMR, 15N NMR, IR, and HRMS), the title molecules were extensively evaluated for their potential antitubercular, antibacterial, and antifungal activities. N-(3-Chlorophenyl)-2-(quinolin-8-ylsulfonyl)hydrazine-1-carbothioamide (QST4), the most effective compound against Mycobacterium tuberculosis H37Rv, was also tested on isoniazid-resistant clinical isolates with katG and inhA promoter mutations. Based on molecular docking studies, QST4 was also likely to demonstrate its antimycobacterial activity through inhibition of the InhA enzyme. Furthermore, three derivatives (QST3, QST4, and QST10) with preferable antimicrobial and drug-like profiles were also shown to be nontoxic against human embryonic kidney (HEK) cells. All compounds were optimized by the density functional theory method using B3LYP with the 6-31+G(d,p) basis set. Structural analysis, natural bond orbital calculations of donor-acceptor interactions, molecular electrostatic potential analysis, and frontier molecular orbital analysis were carried out. Quantum chemical descriptors and charges on the atoms were determined to compare the strengths of the intramolecular hydrogen bonds formed and their stabilities. We determined that the sulfur atom forms a stronger intramolecular hydrogen bond than the nitrogen, oxygen, and fluorine atoms in these sulfonyl thiosemicarbazide derivatives.
Collapse
Affiliation(s)
- Esma Özcan
- Department
of Chemistry, Faculty of Science, Erciyes
University, 38039 Kayseri, Turkey
- Department
of Basic Sciences, Faculty of Pharmacy, Erciyes University, 38039 Kayseri, Turkey
| | - Siva Krishna Vagolu
- Unit
for Genome Dynamics, Department of Microbiology, University of Oslo, 0316 Oslo, Norway
| | - Miyase Gözde Gündüz
- Department
of Pharmaceutical Chemistry, Faculty of Pharmacy, Hacettepe University, Sıhhiye, 06100 Ankara, Turkey
| | - Milena Stevanovic
- Institute
of Molecular Genetics and Genetic Engineering, University of Belgrade, 11000 Belgrade, Serbia
| | - Zülbiye Kökbudak
- Department
of Chemistry, Faculty of Science, Erciyes
University, 38039 Kayseri, Turkey
| | - Tone Tønjum
- Unit
for Genome Dynamics, Department of Microbiology, University of Oslo, 0316 Oslo, Norway
- Unit for
Genome Dynamics, Department of Microbiology, Oslo University Hospital, 0316 Oslo, Norway
| | - Jasmina Nikodinovic-Runic
- Institute
of Molecular Genetics and Genetic Engineering, University of Belgrade, 11000 Belgrade, Serbia
| | - Yasin Çetinkaya
- Department
of Chemistry, Faculty of Science, Atatürk
University, 25240 Erzurum, Turkey
| | - Şengül Dilem Doğan
- Department
of Basic Sciences, Faculty of Pharmacy, Erciyes University, 38039 Kayseri, Turkey
| |
Collapse
|
4
|
Srinivasappa PM, Prasad D, Chaudhari NK, Samal AK, Thapa R, Siddharthan EE, Jadhav AH. Trimetallic Oxide Foam as an Efficient Catalyst for Fixation of CO 2 into Oxazolidinone: An Experimental and Theoretical Approach. ACS APPLIED MATERIALS & INTERFACES 2023; 15:21994-22011. [PMID: 37114882 DOI: 10.1021/acsami.2c23019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
The excess anthropogenic CO2 depletion via the catalytic approach to produce valuable chemicals is an industrially challenging, demanding, and encouraging strategy for CO2 fixation. Herein, we demonstrate a selective one-pot strategy for CO2 fixation into "oxazolidinone" by employing stable porous trimetallic oxide foam (PTOF) as a new catalyst. The PTOF catalyst was synthesized by a solution combustion method using transition metals Cu, Co, and Ni and systematically characterized by X-ray diffraction (XRD), thermogravimetric analysis (TGA), field emission scanning electron microscopy (FE-SEM), high-resolution transmission electron microscopy (HR-TEM), N2 sorption, temperature-programmed desorption (TPD), and X-ray photoelectron spectroscopy (XPS) analysis. Due to the distinctive synthesis method and unique combination of metal oxides and their percentage, the PTOF catalyst displayed highly interconnected porous channels along with uniformly distributed active sites on its surface. Well ahead, the PTOF catalyst was screened for the fixation of CO2 into oxazolidinone. The screened and optimized reaction parameters revealed that the PTOF catalyst showed highly efficient and selective activity with 100% conversion of aniline along with 96% selectivity and yield toward the oxazolidinone product at mild and solvent-free reaction conditions. The superiority of the catalytic performance could be due to the presence of surface active sites and acid-base cooperative synergistic properties of the mixed metal oxides. A doubly synergistic plausible reaction mechanism was proposed for the oxazolidinone synthesis experimentally with the support of DFT calculations along with bond lengths, bond angles, and binding energies. In addition, stepwise intermediate formations with the free energy profile were also proposed. Also, the PTOF catalyst displayed good tolerance toward substituted aromatic amines and terminal epoxides for the fixation of CO2 into oxazolidinones. Very interestingly, the PTOF catalyst could be significantly reused for up to 15 consecutive cycles with stable activity and retention in physicochemical properties.
Collapse
Affiliation(s)
- Puneethkumar M Srinivasappa
- Centre for Nano and Material Science, JAIN University, Jain Global Campus, Bangalore 562112, Karnataka, India
| | - Divya Prasad
- Centre for Nano and Material Science, JAIN University, Jain Global Campus, Bangalore 562112, Karnataka, India
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
| | - Nitin K Chaudhari
- Department of Chemistry, School of Technology, Pandit Deendayal Petroleum University, Gandhinagar 382007, Gujarat, India
| | - Akshaya K Samal
- Centre for Nano and Material Science, JAIN University, Jain Global Campus, Bangalore 562112, Karnataka, India
| | - Ranjit Thapa
- Department of Physics, SRM University─AP, Amaravati 522240, Andhra Pradesh, India
| | | | - Arvind H Jadhav
- Centre for Nano and Material Science, JAIN University, Jain Global Campus, Bangalore 562112, Karnataka, India
| |
Collapse
|
5
|
Çetinkaya Y, Artunç T, Menzek A. AlCl 3-Catalyzed Cascade Reactions of 1,2,3-Trimethoxybenzene and Adipoyl Chloride: Spectroscopic Investigations and Density Functional Theory Studies. ACS OMEGA 2022; 7:38882-38893. [PMID: 36340161 PMCID: PMC9631882 DOI: 10.1021/acsomega.2c04612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
The reaction of 1,2,3-trimethoxybenzene with adipoyl chloride in the presence of AlCl3 gave two isomeric cyclopentene derivatives, 1,6-bis(2,3,4-trimethoxyphenyl)hexane-1,6-dione, and two demethylation products of aryl methyl ethers. The cyclopentene derivatives including unconjugated or conjugated enones are products formed in a cascade reaction resulting from first the Friedel-Crafts acylation reaction and then aldol condensation. All compounds were optimized by density functional theory calculated using two functional levels, B3LYP and M06-2X, with the 6-311+G(d,p) basis set. The structural properties were established, natural bond orbital analysis of donor-acceptor interactions was carried out, and charges on the atoms and quantum chemical reactivity identifiers were determined to compare the strength of the intramolecular hydrogen bonds formed and their stabilities. To compare the experimental 1H and 13C NMR chemical shifts with the calculated values, NMR chemical shift calculations were carried out using the gauge-invariant atomic orbital method.
Collapse
Affiliation(s)
- Yasin Çetinkaya
- Department of Chemistry,
Faculty of Science, Atatürk University, 25240Erzurum, Turkey
| | - Tekin Artunç
- Department of Chemistry,
Faculty of Science, Atatürk University, 25240Erzurum, Turkey
| | - Abdullah Menzek
- Department of Chemistry,
Faculty of Science, Atatürk University, 25240Erzurum, Turkey
| |
Collapse
|
6
|
Chemam Y, Aouf Z, Amira A, K’tir H, Bentoumi H, Ghodbane R, Zerrouki R, Aouf NE. Recent advances in the chemistry of chlorosulfonyl isocyanate: a review. PHOSPHORUS SULFUR 2022. [DOI: 10.1080/10426507.2022.2056738] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Yasmine Chemam
- Bioorganic Chemistry Group, Laboratory of Applied Organic Chemistry, Department of Chemistry, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria
| | - Zineb Aouf
- Bioorganic Chemistry Group, Laboratory of Applied Organic Chemistry, Department of Chemistry, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria
| | - Aϊcha Amira
- Bioorganic Chemistry Group, Laboratory of Applied Organic Chemistry, Department of Chemistry, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria
- National Higher School of Mining and Metallurgy Amar Laskri Annaba, Annaba, Algeria
| | - Hacene K’tir
- Bioorganic Chemistry Group, Laboratory of Applied Organic Chemistry, Department of Chemistry, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria
| | - Houria Bentoumi
- Bioorganic Chemistry Group, Laboratory of Applied Organic Chemistry, Department of Chemistry, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria
| | - Racha Ghodbane
- Bioorganic Chemistry Group, Laboratory of Applied Organic Chemistry, Department of Chemistry, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria
| | - Rachida Zerrouki
- Laboratory of Natural Substances Chemistry, Faculty of Sciences and Technologies, Limoges Cedex, France
| | - Nour-Eddine Aouf
- Bioorganic Chemistry Group, Laboratory of Applied Organic Chemistry, Department of Chemistry, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria
| |
Collapse
|
7
|
Wolf ME, Vandezande JE, Schaefer HF. Catalyzed reaction of isocyanates (RNCO) with water. Phys Chem Chem Phys 2021; 23:18535-18546. [PMID: 34612391 DOI: 10.1039/d1cp03302f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The reactions between substituted isocyanates (RNCO) and other small molecules (e.g. water, alcohols, and amines) are of significant industrial importance, particularly for the development of novel polyurethanes and other useful polymers. We present very high-level ab initio computations on the HNCO + H2O reaction, with results targeting the CCSDT(Q)/CBS//CCSD(T)/cc-pVQZ level of theory. Our results affirm that hydrolysis can occur across both the N[double bond, length as m-dash]C and C[double bond, length as m-dash]O bonds of HNCO via concerted mechanisms to form carbamate or imidic acid with ΔH0K barrier heights of 38.5 and 47.5 kcal mol-1. A total of 24 substituted RNCO + H2O reactions were studied. Geometries obtained with a composite method and refined with CCSD(T)/CBS single point energies determine that substituted RNCO species have a significant influence on these barrier heights, with an extreme case like fluorine lowering both barriers by close to 15 kcal mol-1 and most common alkyl substituents lowering both by approximately 3 kcal mol-1. Natural Bond Orbital (NBO) analysis provides evidence that the predicted barrier heights are strongly associated with the occupation of the in-plane C-O* orbital of the RNCO reactant. Key autocatalytic mechanisms are considered in the presence of excess water and RNCO species. Additional waters (one or two) are predicted to lower both barriers significantly at the CCSD(T)/aug-cc-pV(T+d)Z level of theory with strongly electron withdrawing RNCO substituents also increasing these effects, similar to the uncatalyzed case. The 298 K Gibbs energies are only marginally lowered by a second catalyst water molecule, indicating that the decreasing ΔH0K barriers are offset by loss of translational entropy with more than one catalyst water. Two-step 2RNCO + H2O mechanisms are characterized for the formation of carbamate and imidic acid. The second step of these two pathways exhibits the largest barrier and presents no clear pattern with respect to substituent choice. Our results indicate that an additional RNCO molecule might catalyze imidic acid formation but have less influence on the efficiency of carbamate formation. We expect that these results lay a firm foundation for the experimental study of substituted isocyanates and their relationship to the energetic pathways of related systems.
Collapse
Affiliation(s)
- Mark E Wolf
- Center for Computational Quantum Chemistry, University of Georgia, 140 Cedar Street, Athens, Georgia 30602, USA.
| | | | | |
Collapse
|
8
|
Çetinkaya Y, Maraş A, Göksu S. Insight into the intramolecular interactions of trans-2-azidocycloalk-3-en-1-ols and trans-2-azidocycloalk-3-en-1-yl acetates: A theoretical study. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.132272] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|