1
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Feng S, Su R. Synthetic Chemistry in Flow: From Photolysis & Homogeneous Photocatalysis to Heterogeneous Photocatalysis. CHEMSUSCHEM 2024:e202400064. [PMID: 38608169 DOI: 10.1002/cssc.202400064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 03/08/2024] [Indexed: 04/14/2024]
Abstract
Photocatalytic synthesis of value-added chemicals has gained increasing attention in recent years owing to its versatility in driving many important reactions under ambient conditions. Selective hydrogenation, oxidation, coupling, and halogenation with a high conversion of the reactants have been realized using designed photocatalysts in batch reactors with small volumes at a laboratory scale; however, scaling-up remains a critical challenge due to inefficient utilization of incident light and active sites of the photocatalysts, resulting in poor catalytic performance that hinders its practical applications. Flow systems are considered one of the solutions for practical applications of light-driven reactions and have experienced great success in photolytic and homogeneous photocatalysis, yet their applications in heterogeneous photocatalysis are still under development. In this perspective, we have summarized recent progress in photolytic and photocatalytic synthetic chemistry performed in flow systems from the view of reactor design with a special focus on heterogeneous photocatalysis. The advantages and limitations of different flow systems, as well as some practical considerations of design strategies are discussed.
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Affiliation(s)
- Sitong Feng
- Soochow Institute for Energy and Materials Innovations (SIEMIS), Soochow University, 215006, Suzhou, China
| | - Ren Su
- Soochow Institute for Energy and Materials Innovations (SIEMIS), Soochow University, 215006, Suzhou, China
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2
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Gatarz S, Griffiths OM, Esteves HA, Jiao W, Morse P, Fisher EL, Blakemore DC, Ley SV. Nitro-sulfinate Reductive Coupling to Access (Hetero)aryl Sulfonamides. J Org Chem 2024; 89:1898-1909. [PMID: 38239107 PMCID: PMC10845164 DOI: 10.1021/acs.joc.3c02557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 12/30/2023] [Accepted: 01/03/2024] [Indexed: 02/03/2024]
Abstract
A method to assemble (hetero)aryl sulfonamides via the reductive coupling of aryl sulfinates and nitroarenes is reported. Various reducing conditions with sodium bisulfite and with or without tin(II) chloride in DMSO were developed using an ultrasound bath to improve reaction homogeneity and mixing. A range of (hetero)aryl sulfonamides bearing a selection of functional groups were prepared, and the mechanism of the transformation was investigated. These investigations have led us to propose the formation of nitrosoarene intermediates, which were established via an independent molecular coupling strategy.
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Affiliation(s)
- Sandra
E. Gatarz
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Cambridge CB2 1EW, U.K.
| | - Oliver M. Griffiths
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Cambridge CB2 1EW, U.K.
| | - Henrique A. Esteves
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Cambridge CB2 1EW, U.K.
| | - Wenhua Jiao
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Cambridge CB2 1EW, U.K.
| | - Peter Morse
- Medicine
Design, Pfizer, Inc., Groton, Connecticut 06340, United States
| | - Ethan L. Fisher
- Medicine
Design, Pfizer, Inc., Groton, Connecticut 06340, United States
| | | | - Steven V. Ley
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Cambridge CB2 1EW, U.K.
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3
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Yan C, Fyfe C, Minty L, Barrington H, Jamieson C, Reid M. Computer vision as a new paradigm for monitoring of solution and solid phase peptide synthesis. Chem Sci 2023; 14:11872-11880. [PMID: 37920332 PMCID: PMC10619640 DOI: 10.1039/d3sc01383a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 10/04/2023] [Indexed: 11/04/2023] Open
Abstract
We report a strategy for the camera-enabled non-contact colourimetric reaction monitoring and optimisation of amide bond formation, mediated by coupling reagents. For amide bond formation in solution phase, investigation of reactions mediated by HATU, PyAOP, and DIC/Oxyma evidenced correlations between colour parameters extracted from video data and conversion to amide product measured by off-line HPLC analysis of concentration. These correlations, supported by mutual information analysis, were further investigated using video recordings of solid phase peptide synthesis (SPPS), co-analysed by off-line HPLC to track remaining unreacted substrate in solution. An optimisation method of coupling time in SPPS was derived from ΔE (a measurement of colour contrast), giving comparable isolated peptide yield and purity at 65-95% reduced overall reaction time. The same colour data enabled data-rich monitoring of reaction rate attenuation, consisted with computationally-derived measures of amino acid steric bulk. These findings provide a foundation for exploring the use of camera technology and computer vision towards automated and online mechanistic profiling of SPPS.
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Affiliation(s)
- Chunhui Yan
- WestCHEM Department of Pure & Applied Chemistry, University of Strathclyde Glasgow UK
| | - Calum Fyfe
- WestCHEM Department of Pure & Applied Chemistry, University of Strathclyde Glasgow UK
| | - Laura Minty
- WestCHEM Department of Pure & Applied Chemistry, University of Strathclyde Glasgow UK
| | - Henry Barrington
- WestCHEM Department of Pure & Applied Chemistry, University of Strathclyde Glasgow UK
| | - Craig Jamieson
- WestCHEM Department of Pure & Applied Chemistry, University of Strathclyde Glasgow UK
| | - Marc Reid
- WestCHEM Department of Pure & Applied Chemistry, University of Strathclyde Glasgow UK
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4
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Buurma NJ, Bagley SW. A focus on computer vision for non-contact monitoring of catalyst degradation and product formation kinetics. Chem Sci 2023; 14:10994-10996. [PMID: 37860646 PMCID: PMC10583670 DOI: 10.1039/d3sc90145a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2023] Open
Abstract
Chemists know the value of looking at a reaction for clues about reaction progress and success, but what-it-looks-like has never been quantified. Reid and co-workers (C. Yan, M. Cowie, C. Howcutt, K. M. P. Wheelhouse, N. S. Hodnett, M. Kollie, M. Gildea, M. H. Goodfellow and M. Reid, Chem. Sci., 2023, 14, 5323-5331, https://doi.org/10.1039/d2sc05702f) have developed an approach that uses camera footage of reactions to obtain quantitative descriptors of changes in reaction mixtures to support kinetic analysis.
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Affiliation(s)
- Niklaas J Buurma
- Physical Organic Chemistry Centre, School of Chemistry, Cardiff University Main Building, Park Place Cardiff CF10 3AT UK
| | - Scott W Bagley
- Pfizer Medicine Design Eastern Point Road Groton CT 06340 USA
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5
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Bugeja N, Oliver C, McGrath N, McGuire J, Yan C, Carlysle-Davies F, Reid M. Teaching old presumptive tests new digital tricks with computer vision for forensic applications. DIGITAL DISCOVERY 2023; 2:1143-1151. [PMID: 38013815 PMCID: PMC10408571 DOI: 10.1039/d3dd00066d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 06/26/2023] [Indexed: 11/29/2023]
Abstract
Presumptive (or 'spot') tests have served forensic scientists, law enforcement, and legal practitioners for over a hundred years. Yet, the intended design of such tests, enabling quick identification of drugs by-eye, also hides their full potential. Here, we report the development and application of time-resolved imaging methods of reactions attending spot tests for amphetamines, barbiturates, and benzodiazepines. Analysis of the reaction videos helps distinguish drugs within the same structural class that, by-eye, are judged to give the same qualitative spot test result. It is envisaged that application of these results will bridge the existing suite of field and lab-based confirmatory forensic tests, and support a broader range of colorimetric sensing technologies.
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Affiliation(s)
- Nathalie Bugeja
- Department of Pure and Applied Chemistry, University of Strathclyde Glasgow UK
| | - Cameron Oliver
- Department of Pure and Applied Chemistry, University of Strathclyde Glasgow UK
| | - Nicole McGrath
- Department of Pure and Applied Chemistry, University of Strathclyde Glasgow UK
| | - Jake McGuire
- Department of Pure and Applied Chemistry, University of Strathclyde Glasgow UK
| | - Chunhui Yan
- Department of Pure and Applied Chemistry, University of Strathclyde Glasgow UK
| | | | - Marc Reid
- Department of Pure and Applied Chemistry, University of Strathclyde Glasgow UK
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6
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Yan C, Cowie M, Howcutt C, Wheelhouse KMP, Hodnett NS, Kollie M, Gildea M, Goodfellow MH, Reid M. Computer vision for non-contact monitoring of catalyst degradation and product formation kinetics. Chem Sci 2023; 14:5323-5331. [PMID: 37234891 PMCID: PMC10208035 DOI: 10.1039/d2sc05702f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 02/27/2023] [Indexed: 08/24/2023] Open
Abstract
We report a computer vision strategy for the extraction and colorimetric analysis of catalyst degradation and product-formation kinetics from video footage. The degradation of palladium(ii) pre-catalyst systems to form 'Pd black' is investigated as a widely relevant case study for catalysis and materials chemistries. Beyond the study of catalysts in isolation, investigation of Pd-catalyzed Miyaura borylation reactions revealed informative correlations between colour parameters (most notably ΔE, a colour-agnostic measure of contrast change) and the concentration of product measured by off-line analysis (NMR and LC-MS). The breakdown of such correlations helped inform conditions under which reaction vessels were compromised by air ingress. These findings present opportunities to expand the toolbox of non-invasive analytical techniques, operationally cheaper and simpler to implement than common spectroscopic methods. The approach introduces the capability of analyzing the macroscopic 'bulk' for the study of reaction kinetics in complex mixtures, in complement to the more common study of microscopic and molecular specifics.
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Affiliation(s)
- Chunhui Yan
- WestCHEM Department of Pure & Applied Chemistry University of Strathclyde Glasgow UK
| | - Megan Cowie
- WestCHEM Department of Pure & Applied Chemistry University of Strathclyde Glasgow UK
| | - Calum Howcutt
- WestCHEM Department of Pure & Applied Chemistry University of Strathclyde Glasgow UK
| | | | | | - Martin Kollie
- WestCHEM Department of Pure & Applied Chemistry University of Strathclyde Glasgow UK
| | - Martin Gildea
- WestCHEM Department of Pure & Applied Chemistry University of Strathclyde Glasgow UK
| | - Martin H Goodfellow
- WestCHEM Department of Pure & Applied Chemistry University of Strathclyde Glasgow UK
| | - Marc Reid
- WestCHEM Department of Pure & Applied Chemistry University of Strathclyde Glasgow UK
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7
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An Optical Approach for Cell Pellet Detection. SLAS Technol 2023; 28:32-42. [PMID: 36442729 DOI: 10.1016/j.slast.2022.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 11/22/2022] [Accepted: 11/24/2022] [Indexed: 11/27/2022]
Abstract
Cell-based screening methods are increasingly used in diagnostics and drug development. As a result, various research groups from around the world have been working on this topic to develop methods and algorithms that increase the degree of automation of various measurement techniques. The field of computer vision is becoming increasingly important and has therefore a significant influence on the development of various processes in modern laboratories. In this work we describe an approach for detecting two height information, the phase boundary of a cell pellet and the bottom edge of the tube, and thereby a method for determining the highest point of the topology. The starting point for the development of the method described are cells obtained by various procedures and stabilized by a fixative. Centrifugation of the tube causes the cells to settle to the bottom of the tube, resulting in a cell pellet with a clear phase boundary between the cells and the fixative. For further studies, the supernatant fixative has to be removed without reducing the number of cells. The fixative is to be extracted automatically by a liquid robot, which is only possible by accurately determining the cell pellet height. Due to centrifugation, an uneven topology is formed, which is why the entire phase boundary must be examined to detect the highest point of the cell pellet. For this approach, the tube to be examined, which contains the cells and the fixative, is rotated 360° in defined small steps after centrifugation. During rotation, an image is captured in each step, after which a defined image area is separated from the center of the image and merged into a panoramic image. This produces a panoramic image of the cell topology which represents the complete phase boundary, the boundary located on the outside of the tube. This panoramic image is modified through various image processing steps to extract and detect the phase boundary. Various image processing algorithms from the OpenCV library are used. In the first step, the panoramic image is convolved with a Gaussian blur filter to reduce noise. In the following step, a black and white image is generated by a thresholding process. This black and white image, or binary image, is convolved with a Sobel operator in the x and y directions and the results are superimposed. This overlaid image shows the top edge of the cell pellet and other edges located in the image. A logical exclusion method of the obtained boundaries is used for the detection of the phase boundary. To detect the tube bottom, a multilevel model was trained in advance with an appropriate data set. This model can detect and localize in near real time the tube bottom in an image. By using the two-height information of the different boundaries, phase boundary and tube bottom, the highest point of the cell pellet can be detected. This information is then passed on to a higher-level process so that the liquid robot can approach this point with the pipette tip to remove the excess fixative. By determining the highest point, the probability of being able to remove a larger amount of fixative without reducing the number of cells is highest. This ensures that post-processing studies have the largest possible number of cells available with complete automation.
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8
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Davies JC, Pattison D, Hirst JD. Machine learning for yield prediction for chemical reactions using in situ sensors. J Mol Graph Model 2023; 118:108356. [PMID: 36272195 DOI: 10.1016/j.jmgm.2022.108356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 09/30/2022] [Accepted: 09/30/2022] [Indexed: 11/28/2022]
Abstract
Machine learning models were developed to predict product formation from time-series reaction data for ten Buchwald-Hartwig coupling reactions. The data was provided by DeepMatter and was collected in their DigitalGlassware cloud platform. The reaction probe has 12 sensors to measure properties of interest, including temperature, pressure, and colour. Colour was a good predictor of product formation for this reaction and machine learning models were able to learn which of the properties were important. Predictions for the current product formation (in terms of % yield) had a mean absolute error of 1.2%. For predicting 30, 60 and 120 min ahead the error rose to 3.4, 4.1 and 4.6%, respectively. The work here presents an example into the insight that can be obtained from applying machine learning methods to sensor data in synthetic chemistry.
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Affiliation(s)
- Joseph C Davies
- School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | | | - Jonathan D Hirst
- School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, UK.
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9
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Wills AG, Charvet S, Battilocchio C, Scarborough CC, Wheelhouse KMP, Poole DL, Carson N, Vantourout JC. High-Throughput Electrochemistry: State of the Art, Challenges, and Perspective. Org Process Res Dev 2021. [DOI: 10.1021/acs.oprd.1c00167] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Alfie G. Wills
- Medicinal Chemistry, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
- Department of Pure & Applied Chemistry, University of Strathclyde, Thomas Graham Building, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
| | - Sylvain Charvet
- Univ Lyon, Université Lyon 1, CNRS, INSA, CPE-Lyon, ICBMS, UMR 5246, Bâtiment LEDERER, 1 rue Victor Grignard, 69622 Villeurbanne Cedex, France
| | - Claudio Battilocchio
- Research Chemistry, Syngenta Crop Protection, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | | | - Katherine M. P. Wheelhouse
- Chemical Development, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
| | - Darren L. Poole
- Medicinal Chemistry, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
| | - Nessa Carson
- Syngenta Jealott’s Hill International Research Centre, Bracknell, Berkshire RG42 6EY, United Kingdom
| | - Julien C. Vantourout
- Univ Lyon, Université Lyon 1, CNRS, INSA, CPE-Lyon, ICBMS, UMR 5246, Bâtiment LEDERER, 1 rue Victor Grignard, 69622 Villeurbanne Cedex, France
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10
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Raju CM, Yu KC, Shih CP, Elpa DP, Prabhu GRD, Urban PL. Catalytic Oxygenation-Mediated Extraction as a Facile and Green Way to Analyze Volatile Solutes. Anal Chem 2021; 93:8923-8930. [PMID: 34143609 DOI: 10.1021/acs.analchem.1c01354] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Sparging-based methods have long been used to liberate volatile organic compounds (VOCs) from liquid sample matrices prior to analysis. In these methods, a carrier gas is delivered from an external source. Here, we demonstrate "catalytic oxygenation-mediated extraction" (COME), which relies on biocatalytic production of oxygen occurring directly in the sample matrix. The newly formed oxygen (micro)bubbles extract the dissolved VOCs. The gaseous extract is immediately transferred to a separation or detection system for analysis. To start COME, dilute hydrogen peroxide is injected into the sample supplemented with catalase enzyme. The entire procedure is performed automatically-after pressing a "start" button, making a clapping sound, or triggering from a smartphone. The pump, valves, and detection system are controlled by a microcontroller board. For quality control and safety purposes, the reaction chamber is monitored by a camera linked to a single-board computer, which follows the enzymatic reaction progress by analyzing images of foam in real time. The data are instantly uploaded to the internet cloud for retrieval. The COME apparatus has been coupled on-line with the gas chromatography electron ionization mass spectrometry (MS) system, atmospheric pressure chemical ionization (APCI) MS system, and APCI ion-mobility spectrometry system. The three hyphenated variants have been tested in analyses of complex matrices (e.g., fruit-based drinks, whiskey, urine, and stored wastewater). In addition to the use of catalase, COME variants using crude potato pulp or manganese(IV) dioxide have been demonstrated. The technique is inexpensive, fast, reliable, and green: it uses low-toxicity chemicals and emits oxygen.
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Affiliation(s)
- Chamarthi Maheswar Raju
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu 30013, Taiwan
| | - Kai-Chiang Yu
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu 30013, Taiwan
| | - Chun-Pei Shih
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu 30013, Taiwan
| | - Decibel P Elpa
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu 30013, Taiwan.,Department of Applied Chemistry, National Yang Ming Chiao Tung University, 1001 University Road, Hsinchu 30010, Taiwan
| | - Gurpur Rakesh D Prabhu
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu 30013, Taiwan
| | - Pawel L Urban
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu 30013, Taiwan.,Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu 30013, Taiwan
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11
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Gambacorta G, Sharley JS, Baxendale IR. A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries. Beilstein J Org Chem 2021; 17:1181-1312. [PMID: 34136010 PMCID: PMC8182698 DOI: 10.3762/bjoc.17.90] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 04/22/2021] [Indexed: 12/28/2022] Open
Abstract
Due to their intrinsic physical properties, which includes being able to perform as volatile liquids at room and biological temperatures, fragrance ingredients/intermediates make ideal candidates for continuous-flow manufacturing. This review highlights the potential crossover between a multibillion dollar industry and the flourishing sub-field of flow chemistry evolving within the discipline of organic synthesis. This is illustrated through selected examples of industrially important transformations specific to the fragrances and flavours industry and by highlighting the advantages of conducting these transformations by using a flow approach. This review is designed to be a compendium of techniques and apparatus already published in the chemical and engineering literature which would constitute a known solution or inspiration for commonly encountered procedures in the manufacture of fragrance and flavour chemicals.
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Affiliation(s)
- Guido Gambacorta
- Department of Chemistry, University of Durham, Stockton Road, Durham, DH1 3LE, United Kingdom
| | - James S Sharley
- Department of Chemistry, University of Durham, Stockton Road, Durham, DH1 3LE, United Kingdom
| | - Ian R Baxendale
- Department of Chemistry, University of Durham, Stockton Road, Durham, DH1 3LE, United Kingdom
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12
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Neyt NC, Riley DL. Application of reactor engineering concepts in continuous flow chemistry: a review. REACT CHEM ENG 2021. [DOI: 10.1039/d1re00004g] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The adoption of flow technology for the manufacture of chemical entities, and in particular pharmaceuticals, has seen rapid growth over the past two decades with the technology now blurring the lines between chemistry and chemical engineering.
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Affiliation(s)
- Nicole C. Neyt
- Faculty of Natural and Agricultural Sciences
- Department of Chemistry
- University of Pretoria
- South Africa
| | - Darren L. Riley
- Faculty of Natural and Agricultural Sciences
- Department of Chemistry
- University of Pretoria
- South Africa
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13
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Eppel S, Xu H, Bismuth M, Aspuru-Guzik A. Computer Vision for Recognition of Materials and Vessels in Chemistry Lab Settings and the Vector-LabPics Data Set. ACS CENTRAL SCIENCE 2020; 6:1743-1752. [PMID: 33145411 PMCID: PMC7596871 DOI: 10.1021/acscentsci.0c00460] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Indexed: 06/11/2023]
Abstract
This work presents a machine learning approach for the computer vision-based recognition of materials inside vessels in the chemistry lab and other settings. In addition, we release a data set associated with the training of the model for further model development. The task to learn is finding the region, boundaries, and category for each material phase and vessel in an image. Handling materials inside mostly transparent containers is the main activity performed by human and robotic chemists in the laboratory. Visual recognition of vessels and their contents is essential for performing this task. Modern machine-vision methods learn recognition tasks by using data sets containing a large number of annotated images. This work presents the Vector-LabPics data set, which consists of 2187 images of materials within mostly transparent vessels in a chemistry lab and other general settings. The images are annotated for both the vessels and the individual material phases inside them, and each instance is assigned one or more classes (liquid, solid, foam, suspension, powder, ...). The fill level, labels, corks, and parts of the vessel are also annotated. Several convolutional nets for semantic and instance segmentation were trained on this data set. The trained neural networks achieved good accuracy in detecting and segmenting vessels and material phases, and in classifying liquids and solids, but relatively low accuracy in segmenting multiphase systems such as phase-separating liquids.
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Affiliation(s)
- Sagi Eppel
- Department
of Chemistry, University of Toronto, Toronto, Ontario M5G 1Z8, Canada
- Department
of Computer Science, University of Toronto, Toronto, Ontario M5G 1Z8, Canada
| | - Haoping Xu
- Department
of Computer Science, University of Toronto, Toronto, Ontario M5G 1Z8, Canada
- Vector
Institute for Artificial Intelligence, Toronto, Ontario M5S 1M1, Canada
| | - Mor Bismuth
- Department
of Cognitive Science, Open University of
Israel, Raanana 43107, Israel
| | - Alan Aspuru-Guzik
- Department
of Chemistry, University of Toronto, Toronto, Ontario M5G 1Z8, Canada
- Department
of Computer Science, University of Toronto, Toronto, Ontario M5G 1Z8, Canada
- Vector
Institute for Artificial Intelligence, Toronto, Ontario M5S 1M1, Canada
- Canadian
Institute for Advanced Research, Toronto, Ontario M5G 1M1, Canada
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14
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Abstract
With the rapid development of high technology, chemical science is not as it used to be a century ago. Many chemists acquire and utilize skills that are well beyond the traditional definition of chemistry. The digital age has transformed chemistry laboratories. One aspect of this transformation is the progressing implementation of electronics and computer science in chemistry research. In the past decade, numerous chemistry-oriented studies have benefited from the implementation of electronic modules, including microcontroller boards (MCBs), single-board computers (SBCs), professional grade control and data acquisition systems, as well as field-programmable gate arrays (FPGAs). In particular, MCBs and SBCs provide good value for money. The application areas for electronic modules in chemistry research include construction of simple detection systems based on spectrophotometry and spectrofluorometry principles, customizing laboratory devices for automation of common laboratory practices, control of reaction systems (batch- and flow-based), extraction systems, chromatographic and electrophoretic systems, microfluidic systems (classical and nonclassical), custom-built polymerase chain reaction devices, gas-phase analyte detection systems, chemical robots and drones, construction of FPGA-based imaging systems, and the Internet-of-Chemical-Things. The technology is easy to handle, and many chemists have managed to train themselves in its implementation. The only major obstacle in its implementation is probably one's imagination.
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Affiliation(s)
- Gurpur Rakesh D Prabhu
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan.,Department of Applied Chemistry, National Chiao Tung University, 1001 University Road, Hsinchu, 300, Taiwan
| | - Pawel L Urban
- Department of Chemistry, National Tsing Hua University, 101, Section 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan.,Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, 101, Section 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan
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15
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Gérardy R, Debecker DP, Estager J, Luis P, Monbaliu JCM. Continuous Flow Upgrading of Selected C 2-C 6 Platform Chemicals Derived from Biomass. Chem Rev 2020; 120:7219-7347. [PMID: 32667196 DOI: 10.1021/acs.chemrev.9b00846] [Citation(s) in RCA: 101] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The ever increasing industrial production of commodity and specialty chemicals inexorably depletes the finite primary fossil resources available on Earth. The forecast of population growth over the next 3 decades is a very strong incentive for the identification of alternative primary resources other than petro-based ones. In contrast with fossil resources, renewable biomass is a virtually inexhaustible reservoir of chemical building blocks. Shifting the current industrial paradigm from almost exclusively petro-based resources to alternative bio-based raw materials requires more than vibrant political messages; it requires a profound revision of the concepts and technologies on which industrial chemical processes rely. Only a small fraction of molecules extracted from biomass bears significant chemical and commercial potentials to be considered as ubiquitous chemical platforms upon which a new, bio-based industry can thrive. Owing to its inherent assets in terms of unique process experience, scalability, and reduced environmental footprint, flow chemistry arguably has a major role to play in this context. This review covers a selection of C2 to C6 bio-based chemical platforms with existing commercial markets including polyols (ethylene glycol, 1,2-propanediol, 1,3-propanediol, glycerol, 1,4-butanediol, xylitol, and sorbitol), furanoids (furfural and 5-hydroxymethylfurfural) and carboxylic acids (lactic acid, succinic acid, fumaric acid, malic acid, itaconic acid, and levulinic acid). The aim of this review is to illustrate the various aspects of upgrading bio-based platform molecules toward commodity or specialty chemicals using new process concepts that fall under the umbrella of continuous flow technology and that could change the future perspectives of biorefineries.
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Affiliation(s)
- Romaric Gérardy
- Center for Integrated Technology and Organic Synthesis, MolSys Research Unit, University of Liège, B-4000 Sart Tilman, Liège, Belgium
| | - Damien P Debecker
- Institute of Condensed Matter and Nanosciences (IMCN), Université catholique de Louvain (UCLouvain), B-1348 Louvain-la-Neuve, Belgium.,Research & Innovation Centre for Process Engineering (ReCIPE), Université catholique de Louvain (UCLouvain), B-1348 Louvain-la-Neuve, Belgium
| | - Julien Estager
- Certech, Rue Jules Bordet 45, Zone Industrielle C, B-7180 Seneffe, Belgium
| | - Patricia Luis
- Research & Innovation Centre for Process Engineering (ReCIPE), Université catholique de Louvain (UCLouvain), B-1348 Louvain-la-Neuve, Belgium.,Materials & Process Engineering (iMMC-IMAP), UCLouvain, B-1348 Louvain-la-Neuve, Belgium
| | - Jean-Christophe M Monbaliu
- Center for Integrated Technology and Organic Synthesis, MolSys Research Unit, University of Liège, B-4000 Sart Tilman, Liège, Belgium
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Flow Chemistry in Contemporary Chemical Sciences: A Real Variety of Its Applications. Molecules 2020; 25:molecules25061434. [PMID: 32245225 PMCID: PMC7146634 DOI: 10.3390/molecules25061434] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 03/14/2020] [Accepted: 03/16/2020] [Indexed: 12/15/2022] Open
Abstract
Flow chemistry is an area of contemporary chemistry exploiting the hydrodynamic conditions of flowing liquids to provide particular environments for chemical reactions. These particular conditions of enhanced and strictly regulated transport of reagents, improved interface contacts, intensification of heat transfer, and safe operation with hazardous chemicals can be utilized in chemical synthesis, both for mechanization and automation of analytical procedures, and for the investigation of the kinetics of ultrafast reactions. Such methods are developed for more than half a century. In the field of chemical synthesis, they are used mostly in pharmaceutical chemistry for efficient syntheses of small amounts of active substances. In analytical chemistry, flow measuring systems are designed for environmental applications and industrial monitoring, as well as medical and pharmaceutical analysis, providing essential enhancement of the yield of analyses and precision of analytical determinations. The main concept of this review is to show the overlapping of development trends in the design of instrumentation and various ways of the utilization of specificity of chemical operations under flow conditions, especially for synthetic and analytical purposes, with a simultaneous presentation of the still rather limited correspondence between these two main areas of flow chemistry.
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17
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Fitzpatrick DE, O'Brien M, Ley SV. A tutored discourse on microcontrollers, single board computers and their applications to monitor and control chemical reactions. REACT CHEM ENG 2020. [DOI: 10.1039/c9re00407f] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
This Tutored Discourse constitutes a preliminary exposure on how synthesis chemists can engage positively with inexpensive, low-power microcontrollers to aid control, monitoring and optimisation of chemical reactions.
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Affiliation(s)
| | - Matthew O'Brien
- Department of Chemistry
- Keele University
- Staffordshire ST5 5BG
- UK
| | - Steven V. Ley
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
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18
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Aka EC, Wimmer E, Barré E, Vasudevan N, Cortés-Borda D, Ekou T, Ekou L, Rodriguez-Zubiri M, Felpin FX. Reconfigurable Flow Platform for Automated Reagent Screening and Autonomous Optimization for Bioinspired Lignans Synthesis. J Org Chem 2019; 84:14101-14112. [PMID: 31568728 DOI: 10.1021/acs.joc.9b02263] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Naturally occurring benzoxanthenones, which belong to the vast family of lignans, are promising biologically relevant targets. They are biosynthetically produced by the oxidative dimerization of 2-propenyl phenols. In this manuscript, we disclose a powerful automated flow-based strategy for identifying and optimizing a cobalt-catalyzed oxidizing system for the bioinspired dimerization of 2-propenyl phenols. We designed a reconfigurable flow reactor associating online monitoring and process control instrumentation. Our machine was first configured as an automated screening platform to evaluate a matrix of 4 catalysts (plus the blank) and 5 oxidants (plus the blank) at two different temperatures, resulting in an array of 50 reactions. The automated screening was conducted on micromole scale at a rate of one fully characterized reaction every 26 min. After having identified the most promising cobalt-catalyzed oxidizing system, the automated screening platform was straightforwardly reconfigured to an autonomous self-optimizing flow reactor by implementation of an optimization algorithm in the closed-loop system. The optimization campaign allowed the determination of very effective experimental conditions in a limited number of experiments, which allowed us to prepare the natural products carpanone and polemannone B as well as synthetic analogues.
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Affiliation(s)
- Ehu Camille Aka
- Université de Nantes , CEISAM, CNRS UMR 6230 , 2 rue de la Houssinière , 44322 Cedex 3 Nantes , France
| | - Eric Wimmer
- Université de Nantes , CEISAM, CNRS UMR 6230 , 2 rue de la Houssinière , 44322 Cedex 3 Nantes , France
| | - Elvina Barré
- Université de Nantes , CEISAM, CNRS UMR 6230 , 2 rue de la Houssinière , 44322 Cedex 3 Nantes , France
| | - Natarajan Vasudevan
- Université de Nantes , CEISAM, CNRS UMR 6230 , 2 rue de la Houssinière , 44322 Cedex 3 Nantes , France
| | - Daniel Cortés-Borda
- Université de Nantes , CEISAM, CNRS UMR 6230 , 2 rue de la Houssinière , 44322 Cedex 3 Nantes , France
| | - Tchirioua Ekou
- Université Nangui Abrogoua , Laboratoire de Thermodynamique et de Physico-Chimie du Milieu , 02 BP 801 Abidjan 02 , Côte d'Ivoire
| | - Lynda Ekou
- Université Nangui Abrogoua , Laboratoire de Thermodynamique et de Physico-Chimie du Milieu , 02 BP 801 Abidjan 02 , Côte d'Ivoire
| | - Mireia Rodriguez-Zubiri
- Université de Nantes , CEISAM, CNRS UMR 6230 , 2 rue de la Houssinière , 44322 Cedex 3 Nantes , France
| | - François-Xavier Felpin
- Université de Nantes , CEISAM, CNRS UMR 6230 , 2 rue de la Houssinière , 44322 Cedex 3 Nantes , France
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19
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Riley DL, Strydom I, Chikwamba R, Panayides JL. Landscape and opportunities for active pharmaceutical ingredient manufacturing in developing African economies. REACT CHEM ENG 2019. [DOI: 10.1039/c8re00236c] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This review will highlight the opportunities that exist in the localization of cutting-edge manufacturing technologies within an African context.
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Affiliation(s)
- Darren L. Riley
- Department of Chemistry
- Faculty of Natural and Agricultural Sciences
- University of Pretoria, Pretoria
- South Africa
| | - Ian Strydom
- Department of Chemistry
- Faculty of Natural and Agricultural Sciences
- University of Pretoria, Pretoria
- South Africa
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20
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Sousa DM, Alves LC, Marques A, Gaspar G, Lima JC, Ferreira I. Facile Microwave-assisted Synthesis Manganese Doped Zinc Sulfide Nanoparticles. Sci Rep 2018; 8:15992. [PMID: 30375422 PMCID: PMC6207788 DOI: 10.1038/s41598-018-34268-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Accepted: 10/12/2018] [Indexed: 11/09/2022] Open
Abstract
Undoped and manganese doped zinc sulfide nanoparticles were produced by a fast, one-step and two-component microwave-assisted synthesis method. The solid phase retains around 78% of the initial Mn concentration, as revealed by Particle Induced X-ray Emission analysis. X-ray diffraction patterns confirmed zinc blende structure and in the transmission electron microscopy images, nanoparticles with triangular prism and cube shapes were observed, respectively with an average particle size around 7 nm and 13 nm. Dried powders of zinc sulfide nanoparticles, doped with 0.1 mol% and 0.7 mol% of Mn ions, show highest brilliance of luminescence under UV light. Increasing dopant levels resulted in a diminishing emission that vanishes above 4% of dopant concentration. The synthesis of ZnS was monitored and two main events were detected, one at 145 °C corresponding to the sol-gel phase formation and another after ~3 min at 300 °C where the precipitation of the zinc sulfide nanoparticles occurs.
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Affiliation(s)
- David Magalhães Sousa
- CENIMAT/I3N, Departamento de Ciência dos Materiais Universidade Nova de Lisboa Quinta da Torre, Campus Universitário, 2829-516, Caparica, Portugal.
| | - Luís Cerqueira Alves
- Centro de Ciências e Tecnologias Nucleares Instituto Superior Técnico Estrada Nacional 10 (km 139,7), 2695-066, Bobadela, LRS, Portugal
| | - Ana Marques
- CENIMAT/I3N, Departamento de Ciência dos Materiais Universidade Nova de Lisboa Quinta da Torre, Campus Universitário, 2829-516, Caparica, Portugal
| | - Guilherme Gaspar
- CENIMAT/I3N, Departamento de Ciência dos Materiais Universidade Nova de Lisboa Quinta da Torre, Campus Universitário, 2829-516, Caparica, Portugal
| | - João Carlos Lima
- LAQV-REQUIMTE, Departamento de Química, CQF B Universidade Nova de Lisboa Quinta da Torre, Campus Universitário, 2829-516, Caparica, Portugal
| | - Isabel Ferreira
- CENIMAT/I3N, Departamento de Ciência dos Materiais Universidade Nova de Lisboa Quinta da Torre, Campus Universitário, 2829-516, Caparica, Portugal
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21
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Fitzpatrick DE, Maujean T, Evans AC, Ley SV. Across‐the‐World Automated Optimization and Continuous‐Flow Synthesis of Pharmaceutical Agents Operating Through a Cloud‐Based Server. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201809080] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Timothé Maujean
- Département de ChimieEcole Normale Supérieure Paris Saclay 94235 Cachan Cedex France
| | - Amanda C. Evans
- Department of Chemistry & BiochemistryCalifornia State University Fullerton 800 N. State College Blvd. Fullerton CA 92831 USA
| | - Steven V. Ley
- Department of ChemistryUniversity of Cambridge Lensfield Road Cambridge UK
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22
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Fitzpatrick DE, Maujean T, Evans AC, Ley SV. Across-the-World Automated Optimization and Continuous-Flow Synthesis of Pharmaceutical Agents Operating Through a Cloud-Based Server. Angew Chem Int Ed Engl 2018; 57:15128-15132. [PMID: 30272384 PMCID: PMC6391944 DOI: 10.1002/anie.201809080] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Indexed: 11/08/2022]
Abstract
The power of the Cloud has been harnessed for pharmaceutical compound production with remote servers based in Tokyo, Japan being left to autonomously find optimal synthesis conditions for three active pharmaceutical ingredients (APIs) in laboratories in Cambridge, UK. A researcher located in Los Angeles, USA controlled the entire process via an internet connection. The constituent synthetic steps for Tramadol, Lidocaine, and Bupropion were thus optimized with minimal intervention from operators within hours, yielding conditions satisfying customizable evaluation functions for all examples.
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Affiliation(s)
| | - Timothé Maujean
- Département de Chimie, Ecole Normale Supérieure Paris Saclay, 94235, Cachan Cedex, France
| | - Amanda C Evans
- Department of Chemistry & Biochemistry, California State University Fullerton, 800 N. State College Blvd., Fullerton, CA, 92831, USA
| | - Steven V Ley
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, UK
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23
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Cortés-Borda D, Wimmer E, Gouilleux B, Barré E, Oger N, Goulamaly L, Peault L, Charrier B, Truchet C, Giraudeau P, Rodriguez-Zubiri M, Le Grognec E, Felpin FX. An Autonomous Self-Optimizing Flow Reactor for the Synthesis of Natural Product Carpanone. J Org Chem 2018; 83:14286-14299. [DOI: 10.1021/acs.joc.8b01821] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Daniel Cortés-Borda
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Eric Wimmer
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Boris Gouilleux
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Elvina Barré
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Nicolas Oger
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Lubna Goulamaly
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Louis Peault
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Benoît Charrier
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Charlotte Truchet
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6241, LINA, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Patrick Giraudeau
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
- Institut Universitaire de France, 1 rue Descartes, 75231 Paris Cedex 05, France
| | - Mireia Rodriguez-Zubiri
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Erwan Le Grognec
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - François-Xavier Felpin
- Université de Nantes, UFR des Sciences et des Techniques, CNRS UMR 6230, CEISAM, 2 rue de la Houssinière, 44322 Nantes Cedex 3, France
- Institut Universitaire de France, 1 rue Descartes, 75231 Paris Cedex 05, France
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24
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An open-source approach to automation in organic synthesis: The flow chemical formation of benzamides using an inline liquid-liquid extraction system and a homemade 3-axis autosampling/product-collection device. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.02.043] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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25
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26
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Fitzpatrick DE, Mutton RJ, Ley SV. In-line separation of multicomponent reaction mixtures using a new semi-continuous supercritical fluid chromatography system. REACT CHEM ENG 2018. [DOI: 10.1039/c8re00107c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new bespoke semi-continuous parallel column supercritical fluid chromatography unit has been developed that solves the problem of effective separation of continuous, multicomponent reaction mixtures.
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Affiliation(s)
- Daniel E. Fitzpatrick
- Innovative Technology Centre
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
| | - Robbie J. Mutton
- Innovative Technology Centre
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
| | - Steven V. Ley
- Innovative Technology Centre
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
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27
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Abstract
The development of batch–flow hybrid processes is becoming an attractive prospect through which chemists can make use of the best aspects of both technologies.
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Affiliation(s)
- N. C. Neyt
- Department of Natural and Agricultural Sciences
- University of Pretoria
- Pretoria
- South Africa
| | - D. L. Riley
- Department of Natural and Agricultural Sciences
- University of Pretoria
- Pretoria
- South Africa
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28
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O’Brien M. An automated colorimetric inline titration of CO2 concentrations in solvent flow streams using a Teflon AF-2400 tube-in-tube device. J CO2 UTIL 2017. [DOI: 10.1016/j.jcou.2017.08.020] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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29
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Battilocchio C, Bosica F, Rowe SM, Abreu BL, Godineau E, Lehmann M, Ley SV. Continuous Preparation and Use of Dibromoformaldoxime as a Reactive Intermediate for the Synthesis of 3-Bromoisoxazolines. Org Process Res Dev 2017. [DOI: 10.1021/acs.oprd.7b00229] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Claudio Battilocchio
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Francesco Bosica
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Sam M. Rowe
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Bruna L. Abreu
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Edouard Godineau
- Syngenta Crop Protection AG, Crop Protection Research, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - Matthias Lehmann
- Syngenta Crop Protection AG, Crop Protection Research, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - Steven V. Ley
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
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30
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Groves LM, Schotten C, Beames J, Platts JA, Coles SJ, Horton PN, Browne DL, Pope SJA. From Ligand to Phosphor: Rapid, Machine-Assisted Synthesis of Substituted Iridium(III) Pyrazolate Complexes with Tuneable Luminescence. Chemistry 2017; 23:9407-9418. [DOI: 10.1002/chem.201701551] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Indexed: 12/12/2022]
Affiliation(s)
- Lara M. Groves
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Christiane Schotten
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Joseph Beames
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - James A. Platts
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Simon J. Coles
- UK National Crystallographic Service, Chemistry; University of Southampton, Highfield; Southampton SO17 1BJ UK
| | - Peter N. Horton
- UK National Crystallographic Service, Chemistry; University of Southampton, Highfield; Southampton SO17 1BJ UK
| | - Duncan L. Browne
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Simon J. A. Pope
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
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31
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Harnessing open-source technology for low-cost automation in synthesis: Flow chemical deprotection of silyl ethers using a homemade autosampling system. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2017.05.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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32
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Shukla CA, Kulkarni AA. Automating multistep flow synthesis: approach and challenges in integrating chemistry, machines and logic. Beilstein J Org Chem 2017; 13:960-987. [PMID: 28684977 PMCID: PMC5480366 DOI: 10.3762/bjoc.13.97] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Accepted: 03/31/2017] [Indexed: 12/30/2022] Open
Abstract
The implementation of automation in the multistep flow synthesis is essential for transforming laboratory-scale chemistry into a reliable industrial process. In this review, we briefly introduce the role of automation based on its application in synthesis viz. auto sampling and inline monitoring, optimization and process control. Subsequently, we have critically reviewed a few multistep flow synthesis and suggested a possible control strategy to be implemented so that it helps to reliably transfer the laboratory-scale synthesis strategy to a pilot scale at its optimum conditions. Due to the vast literature in multistep synthesis, we have classified the literature and have identified the case studies based on few criteria viz. type of reaction, heating methods, processes involving in-line separation units, telescopic synthesis, processes involving in-line quenching and process with the smallest time scale of operation. This classification will cover the broader range in the multistep synthesis literature.
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Affiliation(s)
- Chinmay A Shukla
- Academy of Scientific and Innovative Research (AcSIR), CSIR-National Chemical Laboratory (NCL) Campus, Pune 411008, India
- Chem. Eng. & Proc. Dev. Div., CSIR-National Chemical Laboratory, Dr. Homi Bhaba Road, Pashan, Pune 411008, India
| | - Amol A Kulkarni
- Academy of Scientific and Innovative Research (AcSIR), CSIR-National Chemical Laboratory (NCL) Campus, Pune 411008, India
- Chem. Eng. & Proc. Dev. Div., CSIR-National Chemical Laboratory, Dr. Homi Bhaba Road, Pashan, Pune 411008, India
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33
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O'Brien M, Cooper DA, Dolan J. Continuous flow iodination using an automated computer-vision controlled liquid-liquid extraction system. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2017.01.029] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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34
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The continuous-flow synthesis of carbazate hydrazones using a simplified computer-vision controlled liquid–liquid extraction system. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.10.018] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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35
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Fitzpatrick D, Battilocchio C, Ley SV. Enabling Technologies for the Future of Chemical Synthesis. ACS CENTRAL SCIENCE 2016; 2:131-8. [PMID: 27163040 PMCID: PMC4827522 DOI: 10.1021/acscentsci.6b00015] [Citation(s) in RCA: 96] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Indexed: 05/07/2023]
Abstract
Technology is evolving at breakneck pace, changing the way we communicate, travel, find out information, and live our lives. Yet chemistry as a science has been slower to adapt to this rapidly shifting world. In this Outlook we use highlights from recent literature reports to describe how progresses in enabling technologies are altering this trend, permitting chemists to incorporate new advances into their work at all levels of the chemistry development cycle. We discuss the benefits and challenges that have arisen, impacts on academic-industry relationships, and future trends in the area of chemical synthesis.
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36
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Fabry DC, Sugiono E, Rueping M. Online monitoring and analysis for autonomous continuous flow self-optimizing reactor systems. REACT CHEM ENG 2016. [DOI: 10.1039/c5re00038f] [Citation(s) in RCA: 102] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
In this review the recent progress in the field of self-optimizing reactor systems for continuous flow chemistry is presented.
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Affiliation(s)
- D. C. Fabry
- Institute of Organic Chemistry
- RWTH Aachen
- Landoltweg 1
- 52074 Aachen
- Germany
| | - E. Sugiono
- Institute of Organic Chemistry
- RWTH Aachen
- Landoltweg 1
- 52074 Aachen
- Germany
| | - M. Rueping
- Institute of Organic Chemistry
- RWTH Aachen
- Landoltweg 1
- 52074 Aachen
- Germany
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37
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Trojanowicz M. Flow chemistry vs. flow analysis. Talanta 2016; 146:621-40. [DOI: 10.1016/j.talanta.2015.07.043] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Revised: 07/07/2015] [Accepted: 07/13/2015] [Indexed: 11/28/2022]
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38
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Close AJ, Kemmitt P, Mark Roe S, Spencer J. Regioselective routes to orthogonally-substituted aromatic MIDA boronates. Org Biomol Chem 2016; 14:6751-6. [DOI: 10.1039/c6ob01141a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A series of tetrasubstituted aromatics has been synthesized, many of which are based on elaborated N-methyliminodiacetic acid (MIDA)-boronates.
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Affiliation(s)
- Adam J. Close
- Dept of Chemistry
- School of Life Sciences
- University of Sussex
- Falmer
- UK
| | | | - S. Mark Roe
- Dept of Biochemistry
- School of Life Sciences
- University of Sussex
- Falmer
- UK
| | - John Spencer
- Dept of Chemistry
- School of Life Sciences
- University of Sussex
- Falmer
- UK
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39
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Fitzpatrick DE, Ley SV. Engineering chemistry: integrating batch and flow reactions on a single, automated reactor platform. REACT CHEM ENG 2016. [DOI: 10.1039/c6re00160b] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Synthesis chemistry need not be limited to either only batch or only flow; rather, in the future we expect that it will consist of an amalgamation of the best and most appropriate methods.
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Affiliation(s)
| | - S. V. Ley
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
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40
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Fitzpatrick DE, Battilocchio C, Ley SV. A Novel Internet-Based Reaction Monitoring, Control and Autonomous Self-Optimization Platform for Chemical Synthesis. Org Process Res Dev 2015. [DOI: 10.1021/acs.oprd.5b00313] [Citation(s) in RCA: 125] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Daniel E. Fitzpatrick
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Claudio Battilocchio
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Steven V. Ley
- Innovative
Technology Centre, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
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41
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Brzozowski M, O’Brien M, Ley SV, Polyzos A. Flow chemistry: intelligent processing of gas-liquid transformations using a tube-in-tube reactor. Acc Chem Res 2015; 48:349-62. [PMID: 25611216 DOI: 10.1021/ar500359m] [Citation(s) in RCA: 177] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
CONSPECTUS: The previous decade has witnessed the expeditious uptake of flow chemistry techniques in modern synthesis laboratories, and flow-based chemistry is poised to significantly impact our approach to chemical preparation. The advantages of moving from classical batch synthesis to flow mode, in order to address the limitations of traditional approaches, particularly within the context of organic synthesis are now well established. Flow chemistry methodology has led to measurable improvements in safety and reduced energy consumption and has enabled the expansion of available reaction conditions. Contributions from our own laboratories have focused on the establishment of flow chemistry methods to address challenges associated with the assembly of complex targets through the development of multistep methods employing supported reagents and in-line monitoring of reaction intermediates to ensure the delivery of high quality target compounds. Recently, flow chemistry approaches have addressed the challenges associated with reactions utilizing reactive gases in classical batch synthesis. The small volumes of microreactors ameliorate the hazards of high-pressure gas reactions and enable improved mixing with the liquid phase. Established strategies for gas-liquid reactions in flow have relied on plug-flow (or segmented flow) regimes in which the gas plugs are introduced to a liquid stream and dissolution of gas relies on interfacial contact of the gas bubble with the liquid phase. This approach confers limited control over gas concentration within the liquid phase and is unsuitable for multistep methods requiring heterogeneous catalysis or solid supported reagents. We have identified the use of a gas-permeable fluoropolymer, Teflon AF-2400, as a simple method of achieving efficient gas-liquid contact to afford homogeneous solutions of reactive gases in flow. The membrane permits the transport of a wide range of gases with significant control of the stoichiometry of reactive gas in a given reaction mixture. We have developed a tube-in-tube reactor device consisting of a pair of concentric capillaries in which pressurized gas permeates through an inner Teflon AF-2400 tube and reacts with dissolved substrate within a liquid phase that flows within a second gas impermeable tube. This Account examines our efforts toward the development of a simple, unified methodology for the processing of gaseous reagents in flow by way of development of a tube-in-tube reactor device and applications to key C-C, C-N, and C-O bond forming and hydrogenation reactions. We further describe the application to multistep reactions using solid-supported reagents and extend the technology to processes utilizing multiple gas reagents. A key feature of our work is the development of computer-aided imaging techniques to allow automated in-line monitoring of gas concentration and stoichiometry in real time. We anticipate that this Account will illustrate the convenience and benefits of membrane tube-in-tube reactor technology to improve and concomitantly broaden the scope of gas/liquid/solid reactions in organic synthesis.
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Affiliation(s)
- Martin Brzozowski
- CSIRO Manufacturing Flagship, Bayview Avenue, Clayton 3168, Victoria Australia
| | - Matthew O’Brien
- Lennard-Jones Laboratories,
School of Physical and Geographical Sciences, Keele University, Staffordshire ST5 5BG, U.K
| | - Steven V. Ley
- Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, U.K
| | - Anastasios Polyzos
- CSIRO Manufacturing Flagship, Bayview Avenue, Clayton 3168, Victoria Australia
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42
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Rodríguez-Escrich C, Pericàs MA. Organocatalysis on Tap: Enantioselective Continuous Flow Processes Mediated by Solid-Supported Chiral Organocatalysts. European J Org Chem 2015. [DOI: 10.1002/ejoc.201403042] [Citation(s) in RCA: 99] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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43
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Ley SV, Fitzpatrick DE, Ingham RJ, Myers RM. Organic synthesis: march of the machines. Angew Chem Int Ed Engl 2015; 54:3449-64. [PMID: 25586940 DOI: 10.1002/anie.201410744] [Citation(s) in RCA: 309] [Impact Index Per Article: 34.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Indexed: 12/12/2022]
Abstract
Organic synthesis is changing; in a world where budgets are constrained and the environmental impacts of practice are scrutinized, it is increasingly recognized that the efficient use of human resource is just as important as material use. New technologies and machines have found use as methods for transforming the way we work, addressing these issues encountered in research laboratories by enabling chemists to adopt a more holistic systems approach in their work. Modern developments in this area promote a multi-disciplinary approach and work is more efficient as a result. This Review focuses on the concepts, procedures and methods that have far-reaching implications in the chemistry world. Technologies have been grouped as topics of opportunity and their recent applications in innovative research laboratories are described.
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Affiliation(s)
- Steven V Ley
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW (UK).
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44
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Ley SV, Fitzpatrick DE, Ingham RJ, Myers RM. Organische Synthese: Vormarsch der Maschinen. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201410744] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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45
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Kabeshov MA, Śliwiński É, Fitzpatrick DE, Musio B, Newby JA, Blaylock WDW, Ley SV. Development of a web-based platform for studying lithiation reactions in silico. Chem Commun (Camb) 2015; 51:7172-5. [PMID: 25811168 DOI: 10.1039/c5cc00782h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel integrated web-based system has been developed to rationalise and predict lithiation reactions in silico.
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Affiliation(s)
| | - Éric Śliwiński
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
| | | | - Biagia Musio
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
| | - James A. Newby
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
| | | | - Steven V. Ley
- Department of Chemistry
- University of Cambridge
- Cambridge CB2 1EW
- UK
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46
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Herwig G, Hornung CH, Peeters G, Ebdon N, Savage GP. Porous double-layer polymer tubing for the potential use in heterogeneous continuous flow reactions. ACS APPLIED MATERIALS & INTERFACES 2014; 6:22838-22846. [PMID: 25419902 DOI: 10.1021/am5070427] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Functional polymer tubing with an OD of 1/16 or 1/8 in. was fabricated by a simple polymer coextrusion process. The tubing was made of an outer impervious polypropylene layer and an inner layer, consisting of a blend of a functional polymer, polyethylene-co-methacrylic acid, and a sacrificial polymer, polystyrene. After a simple solvent leaching step using common organic solvents, the polystyrene was removed, leaving behind a porous inner layer that contains functional carboxylic acid groups, which could then be used for the immobilization of target molecules. Solution-phase reactions using amines or isocyanates have proven successful for the immobilization of a series of small molecules and polymers. This flexible multilayered functional tubing can be easily cut to the desired length and connected via standard microfluidic fittings.
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Affiliation(s)
- Gordon Herwig
- Manufacturing Flagship, CSIRO , Bag 10, Clayton South, Victoria 3169, Australia
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47
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Ingham RJ, Battilocchio C, Fitzpatrick DE, Sliwinski E, Hawkins JM, Ley SV. A Systems Approach towards an Intelligent and Self‐Controlling Platform for Integrated Continuous Reaction Sequences. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201409356] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Richard J. Ingham
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW (UK)
| | - Claudio Battilocchio
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW (UK)
| | - Daniel E. Fitzpatrick
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW (UK)
| | - Eric Sliwinski
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW (UK)
| | - Joel M. Hawkins
- Pfizer Worldwide Research and Development, Eastern Point Road, Groton, CT 06340 (USA)
| | - Steven V. Ley
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW (UK)
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48
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Ingham RJ, Battilocchio C, Fitzpatrick DE, Sliwinski E, Hawkins JM, Ley SV. A systems approach towards an intelligent and self-controlling platform for integrated continuous reaction sequences. Angew Chem Int Ed Engl 2014; 54:144-8. [PMID: 25377747 PMCID: PMC4502965 DOI: 10.1002/anie.201409356] [Citation(s) in RCA: 104] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Indexed: 12/15/2022]
Abstract
Performing reactions in flow can offer major advantages over batch methods. However, laboratory flow chemistry processes are currently often limited to single steps or short sequences due to the complexity involved with operating a multi-step process. Using new modular components for downstream processing, coupled with control technologies, more advanced multi-step flow sequences can be realized. These tools are applied to the synthesis of 2-aminoadamantane-2-carboxylic acid. A system comprising three chemistry steps and three workup steps was developed, having sufficient autonomy and self-regulation to be managed by a single operator.
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Affiliation(s)
- Richard J Ingham
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW (UK)
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49
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Myers RM, Fitzpatrick DE, Turner RM, Ley SV. Flow Chemistry Meets Advanced Functional Materials. Chemistry 2014; 20:12348-66. [DOI: 10.1002/chem.201402801] [Citation(s) in RCA: 102] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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50
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Newton S, Carter CF, Pearson CM, de C. Alves L, Lange H, Thansandote P, Ley SV. Accelerating Spirocyclic Polyketide Synthesis using Flow Chemistry. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201402056] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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