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Modestov M, Khomenko E, Vitas N, de Vicente A, Navarro A, González-Morales PA, Collados M, Felipe T, Martínez-Gómez D, Hunana P, Luna M, Koll Pistarini M, Popescu Braileanu B, Perdomo García A, Liakh V, Santamaria I, Gomez Miguez MM. Mancha3D Code: Multipurpose Advanced Nonideal MHD Code for High-Resolution Simulations in Astrophysics. SOLAR PHYSICS 2024; 299:23. [PMID: 38390515 PMCID: PMC10879365 DOI: 10.1007/s11207-024-02267-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 01/31/2024] [Indexed: 02/24/2024]
Abstract
The Mancha3D code is a versatile tool for numerical simulations of magnetohydrodynamic (MHD) processes in solar/stellar atmospheres. The code includes nonideal physics derived from plasma partial ionization, a realistic equation of state and radiative transfer, which allows performing high-quality realistic simulations of magnetoconvection, as well as idealized simulations of particular processes, such as wave propagation, instabilities or energetic events. The paper summarizes the equations and methods used in the Mancha3D (Multifluid (-purpose -physics -dimensional) Advanced Non-ideal MHD Code for High resolution simulations in Astrophysics 3D) code. It also describes its numerical stability and parallel performance and efficiency. The code is based on a finite difference discretization and a memory-saving Runge-Kutta (RK) scheme. It handles nonideal effects through super-time-stepping and Hall diffusion schemes, and takes into account thermal conduction by solving an additional hyperbolic equation for the heat flux. The code is easily configurable to perform different kinds of simulations. Several examples of the code usage are given. It is demonstrated that splitting variables into equilibrium and perturbation parts is essential for simulations of wave propagation in a static background. A perfectly matched layer (PML) boundary condition built into the code greatly facilitates a nonreflective open boundary implementation. Spatial filtering is an important numerical remedy to eliminate grid-size perturbations enhancing the code stability. Parallel performance analysis reveals that the code is strongly memory bound, which is a natural consequence of the numerical techniques used, such as split variables and PML boundary conditions. Both strong and weak scalings show adequate performance up to several thousands of processors (CPUs).
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Affiliation(s)
- M. Modestov
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - E. Khomenko
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - N. Vitas
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - A. de Vicente
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - A. Navarro
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - P. A. González-Morales
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - M. Collados
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - T. Felipe
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - D. Martínez-Gómez
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - P. Hunana
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - M. Luna
- Departament de Física, Universitat de les Illes Balears, E-07122 Palma, Spain
- Institute of Applied Computing and Community Code (IAC3), UIB, Palma, Spain
| | - M. Koll Pistarini
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | | | - A. Perdomo García
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - V. Liakh
- Centre for Mathematical Plasma Astrophysics, KU Leuven, 3001 Leuven, Belgium
| | - I. Santamaria
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
| | - M. M. Gomez Miguez
- Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife Spain
- Dpto. de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife Spain
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Felipe T, Braun DC, Birch AC. Helioseismic Holography of Simulated Sunspots: dependence of the travel time on magnetic field strength and Wilson depression. ASTRONOMY AND ASTROPHYSICS 2017; 604:A126. [PMID: 29670298 PMCID: PMC5901911 DOI: 10.1051/0004-6361/201730798] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Improving methods for determining the subsurface structure of sunspots from their seismic signature requires a better understanding of the interaction of waves with magnetic field concentrations. We aim to quantify the impact of changes in the internal structure of sunspots on local helioseismic signals. We have numerically simulated the propagation of a stochastic wave field through sunspot models with different properties, accounting for changes in the Wilson depression between 250 and 550 km and in the photospheric umbral magnetic field between 1500 and 3500 G. The results show that travel-time shifts at frequencies above approximately 3.50 mHz (depending on the phase-speed filter) are insensitive to the magnetic field strength. The travel time of these waves is determined exclusively by the Wilson depression and sound-speed perturbation. The travel time of waves with lower frequencies is affected by the direct effect of the magnetic field, although photospheric field strengths below 1500 G do not leave a significant trace on the travel-time measurements. These results could potentially be used to develop simplified travel-time inversion methods.
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Affiliation(s)
- T Felipe
- Instituto de Astrofísica de Canarias, 38205, C/Vía Láctea, s/n, La Laguna, Tenerife, Spain
- Departamento de Astrofísica, Universidad de La Laguna, 38205, La Laguna, Tenerife, Spain
| | - D C Braun
- NorthWest Research Associates, Boulder, CO 80301, USA
| | - A C Birch
- Max-Planck-Institut für Sonnensystemforschung, Justus-von-Liebig-Weg 3, 37077 Göttingen, Germany
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