Ionic Fragments and Clusters Produced by Electron Impact of Acetonitrile and Methanol Mixed Molecular Films

We report the interaction of anhydrous acetonitrile, CH3CN (ACN), and deuterated methanol, CD3OD (MeOD), in the condensed crystalline phase by electron impact with 2.3 keV of energy. Theoretical and experimental investigations are focused on fragments and aggregates formed as a result of electron-stimulated ion desorption. Positively charged fragments and aggregates were collected using time-of-flight mass spectrometry (TOF-MS) and temperature-programmed desorption based on quadrupole spectroscopy (TPD). The structures of clusters identified in the TOF spectra were studied by applying density functional theory combined with a global minimum search. Two different deposition methods were used for the formation of the condensed molecular films, bilayer and codeposition, and in a second step, the annealing process was performed. The ionic species released from the surface into the vacuum are highly dependent on the annealing. A discussion of the interaction between the molecules was made. The formation of complex organic species comes from the intermolecular or intramolecular interactions of pure MeOD and ACN molecules. Anhydrous compounds were used, and the background water content was minimized to inhibit caging of the ACN molecules by water molecules.

Formation of extraterrestrial peptides and their derivatives

The formation of protein precursors, due to the condensation of atomic carbon under the low-temperature conditions of the molecular phases of the interstellar medium, opens alternative pathways for the origin of life. We perform peptide synthesis under conditions prevailing in space and provide a comprehensive analytic characterization of its products. The application of 13C allowed us to confirm the suggested pathway of peptide formation that proceeds due to the polymerization of aminoketene molecules that are formed in the C + CO + NH3 reaction. Here, we address the question of how the efficiency of peptide production is modified by the presence of water molecules. We demonstrate that although water slightly reduces the efficiency of polymerization of aminoketene, it does not prevent the formation of peptides.

Temperature driven transformations of glycine molecules embedded in interstellar ice

The formation of glycine amino acid on ice grains in space raises fundamental questions about glycine chemistry in interstellar media. In this work, we studied glycine conformational space and the related tautomerization mechanisms in water media by means of QM/MM molecular dynamics simulations of four glycine conformational isomers (cc, ct, tc, and tt). Interstellar low density amorphous (LDA) ice and T = 20 K were considered as representative for a cold interstellar ice environment, while temperatures of 250 and 450 K were included to model rapid local heating in the ice. In addition to the LDA environment, water clusters with 4, 17, and 27 H2O molecules were subjected to QM/MM dynamics simulations that allowed glycine tautomerization behaviour to be evaluated in water surface-like environments. The tautomerization processes were found to be strongly dependent on the number of water molecules and specific isomer structure. All the glycine isomers mostly preserve their canonical "neutral" conformations under interstellar conditions.

Enantiodetermining processes in the synthesis of alanine, serine, and isovaline

In this study, quantum chemical calculations were used to explore the synthesis of three chiral α-amino acids, specifically alanine, serine, and isovaline, from reactants found in interstellar space. Our focus is on the crucial step in the synthesis pathway that determines the chirality of the amino acids. The results indicate that in the case of alanine, the determination of enantiomer is primarily influenced by the direction of the collision of molecules or functional groups, which leads to the formation of a chirality center in a crucial intermediate. However, contrary to chemical expectations, the enantiodetermining/enantioselection step for serine and isovaline synthesis occurs prior to the creation of a chirality center.

Chemistry and physics of dopants embedded in helium droplets

Helium droplets represent a cold inert matrix, free of walls with outstanding properties to grow complexes and clusters at conditions that are perfect to simulate cold and dense regions of the interstellar medium. At sub-Kelvin temperatures, barrierless reactions triggered by radicals or ions have been observed and studied by optical spectroscopy and mass spectrometry. The present review summarizes developments of experimental techniques and methods and recent results they enabled.

Computational studies on the possible formation of glycine via open shell gas-phase chemistry in the interstellar medium

Glycine is the simplest proteinogenic amino acid. It has significant astrobiological implications owing to the ongoing investigation for its detection in the interstellar medium (ISM). Hence, a suitable mechanistic elucidation for its formation in the ISM is of current research interest. In the present work, by employing electronic structure calculations [UCCSD(T) and density functional theory (DFT)], various plausible chemical pathways in the gas phase have been examined for the formation of glycine (whose existence has been indirectly proposed in the ISM) and other simple amino acids (yet to be detected in the ISM) from some simpler molecules present in the ISM. This work suggests that step 1: HO-CO (radical) + CH₂NH → NHCH₂COOH (radical) and step 2a: NHCH₂COOH (radical) + H₂ → glycine + H (radical) have very small barriers of 0.14 kcal mol^-1 and ∼3 kcal mol^-1, respectively (easily surmountable at a temperature of ∼50 K under putative interstellar conditions). Hence this should likely be feasible in interstellar gas-phase chemistry. Therefore, HO-CO (radical), CH₂NH, and H₂ could be the possible precursors for the formation of glycine (subject to the presence of the HO-CO radical). The energetic information related to the interstellar reactions, and how this work takes the putative interstellar conditions into account are presented. This paper also highlights how a reaction found to be unsuitable for interstellar molecular evolution via surface chemistry could nonetheless occur via gas-phase chemistry. Based on our results, this work also recommends detecting three new open-shell molecules, HO-CO radical, NHCH₂COOH radical, and NH₂CHCOOH radical, in the ISM.

Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations

Glycine (Gly), NH2CH2COOH, is the simplest amino acid. Although it has not been directly detected in the interstellar gas-phase medium, it has been identified in comets and meteorites, and its synthesis in these environments has been simulated in terrestrial laboratory experiments. Likewise, condensation of Gly to form peptides in scenarios resembling those present in a primordial Earth has been demonstrated experimentally. Thus, Gly is a paradigmatic system for biomolecular building blocks to investigate how they can be synthesized in astrophysical environments, transported and delivered by fragments of asteroids (meteorites, once they land on Earth) and comets (interplanetary dust particles that land on Earth) to the primitive Earth, and there react to form biopolymers as a step towards the emergence of life. Quantum chemical investigations addressing these Gly-related events have been performed, providing fundamental atomic-scale information and quantitative energetic data. However, they are spread in the literature and difficult to harmonize in a consistent way due to different computational chemistry methodologies and model systems. This review aims to collect the work done so far to characterize, at a quantum mechanical level, the chemical life of Gly, i.e., from its synthesis in the interstellar medium up to its polymerization on Earth.

Non-energetic Formation of Ethanol via CCH Reaction with Interstellar H2O Ices. A Computational Chemistry Study

Ethanol (CH₃CH₂OH) is a relatively common molecule, often found in star-forming regions. Recent studies suggest that it could be a parent molecule of several so-called interstellar complex organic molecules (iCOMs). However, the formation route of this species remains under debate. In the present work, we study the formation of ethanol through the reaction of CCH with one H₂O molecule belonging to the ice as a test case to investigate the viability of chemical reactions based on a "radical + ice component" scheme as an alternative mechanism for the synthesis of iCOMs, beyond the usual radical-radical coupling. This has been done by means of DFT calculations adopting two clusters of 18 and 33 water molecules as ice models. Results indicate that CH₃CH₂OH can potentially be formed by this proposed reaction mechanism. The reaction of CCH with H₂O on the water ice clusters can be barrierless (because of the help of boundary icy water molecules acting as proton-transfer assistants), leading to the formation of vinyl alcohol precursors (H₂CCOH and CHCHOH). Subsequent hydrogenation of vinyl alcohol yielding ethanol is the only step presenting a low activation energy barrier. We finally discuss the astrophysical implications of these findings.

Integrated Molar Absorptivity of Mid- and Far-Infrared Spectra of Glycine and Other Selected Amino Acids

A selection of five proteinogenic amino acids-glycine, isoleucine, phenylalanine, tyrosine, and tryptophan-were studied in the mid-infrared and in the far-infrared with the purpose to facilitate the search and identification of these astrobiologically and astrochemically relevant molecules in space environments. The molar extinction coefficients (ɛ) of all mid- and far-infrared bands were determined as well as the integrated molar absorptivities (ψ). The mid-infrared spectra of the five selected amino acids were recorded also at three different temperatures from -180°C to ambient temperature to +200°C. We measured the wavelength shift of the infrared bands caused by temperature; and for the most relevant or temperature-sensitive infrared bands, a series of linear equations were determined relating wavelength position with temperature. Such equations may provide estimates of the temperature of these molecules once detected in astrophysical objects; and with the reported values of ɛ and ψ, it will be possible to estimate the relative abundance of these molecules in space environments.