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Esquerré D, Ramírez-Álvarez D, Pavón-Vázquez CJ, Troncoso-Palacios J, Garín CF, Keogh JS, Leaché AD. Speciation across mountains: Phylogenomics, species delimitation and taxonomy of the Liolaemus leopardinus clade (Squamata, Liolaemidae). Mol Phylogenet Evol 2019; 139:106524. [DOI: 10.1016/j.ympev.2019.106524] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2018] [Revised: 02/14/2019] [Accepted: 05/29/2019] [Indexed: 11/30/2022]
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2
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Kelly CD. Rate and success of study replication in ecology and evolution. PeerJ 2019; 7:e7654. [PMID: 31565572 PMCID: PMC6743472 DOI: 10.7717/peerj.7654] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 08/10/2019] [Indexed: 01/06/2023] Open
Abstract
The recent replication crisis has caused several scientific disciplines to self-reflect on the frequency with which they replicate previously published studies and to assess their success in such endeavours. The rate of replication, however, has yet to be assessed for ecology and evolution. Here, I survey the open-access ecology and evolution literature to determine how often ecologists and evolutionary biologists replicate, or at least claim to replicate, previously published studies. I found that approximately 0.023% of ecology and evolution studies are described by their authors as replications. Two of the 11 original-replication study pairs provided sufficient statistical detail for three effects so as to permit a formal analysis of replication success. Replicating authors correctly concluded that they replicated an original effect in two cases; in the third case, my analysis suggests that the finding by the replicating authors was consistent with the original finding, contrary the conclusion of “replication failure” by the authors.
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Affiliation(s)
- Clint D Kelly
- Département des Sciences biologiques, Université du Québec à Montréal, Montréal, Quebec, Canada
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Borczyk B, Skawiński T. Tracking down the lizards from Gravenhorst's collection at the University of Wrocław: type specimens of Callopistes maculatus Gravenhorst, 1838 and three Liolaemus species rediscovered. PeerJ 2019; 7:e6525. [PMID: 30809465 PMCID: PMC6388667 DOI: 10.7717/peerj.6525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 01/26/2019] [Indexed: 11/30/2022] Open
Abstract
Johann Ludwig Christian Gravenhorst's herpetological collection at the Museum of Natural History, University of Wrocław included numerous important specimens of amphibians and reptiles. The majority, if not the entirety, of this collection has long been thought to be lost. However, we were able to rediscover some type specimens of lizards. The rediscovered specimens include the holotypes of Liolaemus conspersus and L. hieroglyphicus, one syntype of Callopistes maculatus (here designated as the lectotype) and two syntypes of L. lineatus (one of which is herein designated as the lectotype). Reexamination of these specimens indicates that previous synonymies proposed for L. conspersus and two syntypes of L. hieroglyphicus are problematic; furthermore, more complex taxonomic work is needed to resolve this issue. Two rediscovered syntypes of L. lineatus differ in several scalation traits and are possibly not conspecific. The type specimens of several other species of lizards from Gravenhorst's collection (Liolaemus marmoratus, L. unicolor and two other syntypes of L. lineatus, Leiocephalus schreibersii and Chalcides viridanus) were not found and are probably lost.
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Affiliation(s)
- Bartosz Borczyk
- Department of Evolutionary Biology and Conservation of Vertebrates, University of Wrocław, Wrocław, Poland
| | - Tomasz Skawiński
- Department of Evolutionary Biology and Conservation of Vertebrates, University of Wrocław, Wrocław, Poland
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The True Identity of the New World Iguanid Lizard Liolaemus chillanensis Müller and Hellmich 1932 (Iguania: Liolaemidae) and Description of a New Species in the Liolaemus elongatus Group. Zool Stud 2018; 57:e22. [PMID: 31966262 DOI: 10.6620/zs.2018.57-22] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2017] [Accepted: 04/19/2018] [Indexed: 11/18/2022]
Abstract
Jaime Troncoso-Palacios, Damien Esquerré, Félix A. Urra, Hugo A. Díaz, Carlos Castro-Pastene, and María Soledad Ruiz (2018) Liolaemus is a particularly species-rich radiation of New World iguanid lizards from southern South America. Thanks to intense systematic and taxonomic research, the knowledge on its species- level diversity has increased rapidly over the past several years. The L. elongatus species-complex has received considerable attention and a remarkable case is Liolaemus chillanensis, a name that has been used for two different species that are sympatric in Termas de Chillán, central Chile. Since the holotype is lost, we propose that the first step to identify the true L. chillanensis is through the analysis of the original description. Then we provide a morphological and molecular characterization of L. chillanensis based on topotypes and a description of the taxon previously confused with it.
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Alternative methods of phylogenetic inference for the Patagonian lizard group Liolaemus elongatus-kriegi (Iguania: Liolaemini) based on mitochondrial and nuclear markers. Mol Phylogenet Evol 2018; 120:158-169. [DOI: 10.1016/j.ympev.2017.11.017] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Revised: 11/07/2017] [Accepted: 11/27/2017] [Indexed: 11/18/2022]
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Andrade-Díaz MS, Hibbard TN, Díaz-Gómez JM. Identifying Endemism Areas: An Example Using Neotropical Lizards. SOUTH AMERICAN JOURNAL OF HERPETOLOGY 2017. [DOI: 10.2994/sajh-d-16-00038.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Affiliation(s)
- María Soledad Andrade-Díaz
- Instituto de Bio y Geociencias del Noroeste Argentino, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Salta, Avenida 9 de julio 14, CP 4405, Rosario de Lerma, Salta, Argentina
| | - Thomas Nathaniel Hibbard
- Instituto de Bio y Geociencias del Noroeste Argentino, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Salta, Avenida 9 de julio 14, CP 4405, Rosario de Lerma, Salta, Argentina
| | - Juan Manuel Díaz-Gómez
- Instituto de Bio y Geociencias del Noroeste Argentino, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Salta, Avenida 9 de julio 14, CP 4405, Rosario de Lerma, Salta, Argentina
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Troncoso-Palacios J, Diaz HA, Puas GI, Riveros-Riffo E, Elorza AA. Two new Liolaemus lizards from the Andean highlands of Southern Chile (Squamata, Iguania, Liolaemidae). Zookeys 2016:121-146. [PMID: 27920609 PMCID: PMC5126550 DOI: 10.3897/zookeys.632.9528] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2016] [Accepted: 10/16/2016] [Indexed: 11/12/2022] Open
Abstract
Liolaemus is a diverse genus of lizards, subdivided into two subgenera: Liolaemus (sensu stricto) and Eulaemus, distributed mainly in Chile and Argentina. The Liolaemus elongatus-kriegi complex is the most diverse group within Liolaemus (sensu stricto), especially the species closely related to Liolaemus elongatus, which form a clade currently comprising nine species. Several Chilean species of this group have been recently described, mainly from volcanoes and poorly explored mountains. Here molecular and morphological evidence are provided for a new species of the Liolaemus elongatus clade, which is characterized by its small size and lack of dorsal pattern, unusual features for the species of this group of lizards. Additionally, the lack of precloacal pores in males of Liolaemus (sensu stricto) is a trait found in few species, which do not constitute a monophyletic group. A second new southern Chilean species is also described, without precloacal pores and supported by molecular phylogenetics to be related to Liolaemus villaricensis. Both new species were found in the same locality, near a lake located in a pre-Andean zone with Araucaria and Nothofagus forest. The two species are dedicated to prominent Lonkos (tribal chiefs) of the Mapuche and Pehuenche people: Janequeo and Leftraru. Additionally, the phylogenetic results suggest that Liolaemus lonquimayensis is a synonym of Liolaemus elongatus.
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Affiliation(s)
- Jaime Troncoso-Palacios
- Programa de Fisiologia y Biofisica, Instituto de Ciencias Biomedicas (ICBM), Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
| | - Hugo A Diaz
- Departamento de Ciencias Ecologicas, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Santiago, Chile; Departamento de Ciencias Biologicas Animales, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santa Rosa 11735, Santiago, Chile
| | - German I Puas
- Centro de Investigaciones Biomedicas, Facultad de Ciencias Biologicas y Facultad de Medicina, Universidad Andres Bello, Republica 239, Santiago, Chile; Instituto Milenio de Inmunologia e Inmunoterapia, Portugal 49, Santiago, Chile
| | - Edvin Riveros-Riffo
- Red de Observadores de Aves y Vida Silvestre de Chile, Julio Prado 1144 Dpto. 31, Providencia, Chile
| | - Alvaro A Elorza
- Centro de Investigaciones Biomedicas, Facultad de Ciencias Biologicas y Facultad de Medicina, Universidad Andres Bello, Republica 239, Santiago, Chile; Instituto Milenio de Inmunologia e Inmunoterapia, Portugal 49, Santiago, Chile
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Troncoso-Palacios J, Elorza AA, Puas GI, Alfaro-Pardo E. A new species of Liolaemus related to L. nigroviridis from the Andean highlands of Central Chile (Iguania, Liolaemidae). Zookeys 2016:91-114. [PMID: 26877688 PMCID: PMC4740823 DOI: 10.3897/zookeys.555.6011] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2015] [Accepted: 11/26/2015] [Indexed: 11/12/2022] Open
Abstract
The Liolaemusnigroviridis group is a clade of highland lizards endemic to Chile. These species are distributed from northern to central Chile, and currently there are no cases of sympatric distribution. This study describes a new species, Liolaemusuniformissp. n., from this group, and provides a detailed morphological characterization and mitochondrial phylogeny using cytochrome-b. Liolaemusuniformis was found in sympatry with Liolaemusnigroviridis but noticeably differed in size, scalation, and markedly in the color pattern, without sexual dichromatism. This new species has probably been confused with Liolaemusmonticola and Liolaemusbellii, both of which do not belong to the nigroviridis group. The taxonomic issues of this group that remain uncertain are also discussed.
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Affiliation(s)
- Jaime Troncoso-Palacios
- Programa de Fisiologia y Biofisica, Instituto de Ciencias Biomedicas (ICBM), Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
| | - Alvaro A Elorza
- Centro de Investigaciones Biomedicas, Facultad de Ciencias Biologicas y Facultad de Medicina, Universidad Andres Bello, Republica 239, Santiago, Chile; Instituto Milenio de Inmunologia e Inmunoterapia, Portugal 49, Santiago, Chile
| | - German I Puas
- Centro de Investigaciones Biomedicas, Facultad de Ciencias Biologicas y Facultad de Medicina, Universidad Andres Bello, Republica 239, Santiago, Chile; Instituto Milenio de Inmunologia e Inmunoterapia, Portugal 49, Santiago, Chile
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