Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3)

Removal of denatured protein particles enhanced UASB treatment of oxytetracycline production wastewater

Enhanced hydrolysis, which can selectively destroy antibiotic potency, has been previously demonstrated to be an effective pretreatment technology for the biological treatment of antibiotic production wastewater. However, full-scale application of enhanced hydrolysis to the treatment of real oxytetracycline production wastewater showed that the up-flow anaerobic sludge blanket (UASB) reactors treating the pretreated wastewater could only be stable under a low organic loading rate (OLR) of 1.8 ± 0.4 g·COD/L/d. Deterioration of UASB was also confirmed in treating the same wastewater using a bench-scale reactor (R1) at an OLR of 4.4 ± 0.3 g·COD/L/d. Assuming that the particles formed due to the denaturation of soluble proteins under the hydrolysis temperature (110 °C), resulting in the significant increase of suspended solids (SS) in oxytetracycline production wastewater from less than 200 mg/L to 1200 ± 500 mg/L, were responsible for the deterioration of UASB, the pretreated wastewater was filtered using polypropylene cotton fiber and ultrafiltration membrane, and then fed into two parallel bench-scale UASB reactors (R2 and R3). Both reactors maintained a stable COD removal (53.2% ~ 61.1%) even at an OLR as high as 8.0 g·COD/L/d. When the feed of R3 was switched to unfiltered wastewater, however, deterioration of the reactor occurred again. Microscopic observation showed that the granules in R3 were fully covered by protein particles after the switch of the feed. It was possible that the tight layer of the denatured protein particles blocked the inner pores of the granules, resulting in the obstruction of substrate transfer and biogas emission, while removing the protein particles could abate such blockage problem. This study provides a scientific basis for the efficient treatment of antibiotic production wastewater.

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio

Thermanaerovibrio velox Zavarzina et al. 2000 is a member of the Synergistaceae, a family in the phylum Synergistetes that is already well-characterized at the genome level. Members of this phylum were described as Gram-negative staining anaerobic bacteria with a rod/vibrioid cell shape and possessing an atypical outer cell envelope. They inhabit a large variety of anaerobic environments including soil, oil wells, wastewater treatment plants and animal gastrointestinal tracts. They are also found to be linked to sites of human diseases such as cysts, abscesses, and areas of periodontal disease. The moderately thermophilic and organotrophic T. velox shares most of its morphologic and physiologic features with the closely related species, T. acidaminovorans. In addition to Su883(T), the type strain of T. acidaminovorans, stain Z-9701(T) is the second type strain in the genus Thermanaerovibrio to have its genome sequence published. Here we describe the features of this organism, together with the non-contiguous genome sequence and annotation. The 1,880,838 bp long chromosome (non-contiguous finished sequence) with its 1,751 protein-coding and 59 RNA genes is a part of the G enomic E ncyclopedia of Bacteria and Archaea project.

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T))

Anaerobaculum mobile Menes and Muxí 2002 is one of three described species of the genus Anaerobaculum, family Synergistaceae, phylum Synergistetes. This anaerobic and motile bacterium ferments a range of carbohydrates and mono- and dicarboxylic acids with acetate, hydrogen and CO2 as end products. A. mobile NGA(T) is the first member of the genus Anaerobaculum and the sixth member of the phylum Synergistetes with a completely sequenced genome. Here we describe the features of this bacterium, together with the complete genome sequence, and annotation. The 2,160,700 bp long single replicon genome with its 2,053 protein-coding and 56 RNA genes is part of the G enomic E ncyclopedia of Bacteria and Archaea project.

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T))

Thermovirga lienii Dahle and Birkeland 2006 is a member of the genus Thermovirga in the genomically moderately well characterized phylum 'Synergistetes'. Members of this relatively recently proposed phylum 'Synergistetes' are of interest because of their isolated phylogenetic position and their diverse habitats, e.g. from humans to oil wells. The genome of T. lienii Cas60314(T) is the fifth genome sequence (third completed) from this phylum to be published. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,999,646 bp long genome (including one plasmid) with its 1,914 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Complete chloroform dechlorination by organochlorine respiration and fermentation

Chloroform (CF, CHCl(3)) is a recalcitrant and toxic environmental pollutant. In this communication we report for the first time a microbial community capable of complete CF dechlorination by metabolic processes. Cultures derived from subsurface soil (3.5 m) could sustain complete dechlorination of CF at levels of least 360 µM at a rate of 40 µM per day. Scrutiny of CF dechlorination revealed two metabolic processes at work. First, CF was respired to dichloromethane (DCM, CH(2) Cl(2)), which was then fermented to acetate, hydrogen and carbon dioxide. Elevated hydrogen partial pressures were found to inhibit the fermentation process. Interspecies hydrogen transfer was observed in the form of methanogenesis and acetogenesis. This suggests that the dechlorination process required syntrophic partners to maintain low hydrogen partial pressures. (13)C-labelled DCM was employed to help elucidate the chemistry of the process and identify bacterial community members involved. CF respiring cultures, where emulsified vegetable oil was supplied as the electron donor and DCM fermenting cultures, where DCM was supplied as the sole organic carbon source were studied separately. Pyrosequencing of these cultures revealed Dehalobacter lineages as a predominant community member in both. Subsequent growth experiments confirmed that the proliferation of Dehalobacter was linked directly to both the dehalorespiration and dehalofermentation processes.