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Akonyani ZP, Song F, Li Y, Qiqige S, Wu J. Comparative Analysis of the Microbiota Between Rumen and Duodenum of Twin Lambs Based on Diets of Ceratoides or Alfalfa. Pol J Microbiol 2021; 70:175-187. [PMID: 34349809 PMCID: PMC8326985 DOI: 10.33073/pjm-2021-015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2020] [Accepted: 03/06/2021] [Indexed: 11/06/2022] Open
Abstract
In our previous study, diet directly impacted the microbiota of the rumen in twin lambs. The duodenum is the first part of the small intestine, so we seek to determine whether there is a difference in the digesta between the two feed groups HFLP (high fiber, low protein) and LFHP (low fiber, high protein), and its impact on the biodiversity and metabolism of the duodenum. Results showed that the number of Operational Taxonomic Units (OTUs) in the duodenum (2,373 OTUs) was more than those in the rumen (1,230 OTUs), and 143 OTUs were significantly different in the duodenum between the two groups. The two most predominant phyla were Bacteriodetes and Firmicutes, but this ratio was reversed between the rumen and duodenum of lambs fed different feedstuffs. The difference in the digesta that greatly changed the biodiversity of the rumen and duodenum could affect the microbial community in the gastrointestinal tract (GIT). Sixteen metabolites were significantly different in the duodenum between the two groups based on the metabolome analysis. The relationships were built between the microbiome and the metabolome based on the correlation analysis. Some metabolites have a potential role in influencing meat quality, which indicated that the diet could affect the microbiota community and finally change meat quality. This study could explain how the diet affects the rumen and duodenum’s microbiota, lay a theoretical basis for controlling feed intake, and determine the relationship between the duodenum’s microbiota and metabolism.
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Affiliation(s)
| | - Feng Song
- College of Animal Science and Technology, Inner Mongolia University for the Nationalities, Tongliao, China
| | - Ying Li
- College of Animal Science and Technology, Inner Mongolia University for the Nationalities, Tongliao, China
| | - Sude Qiqige
- College of Animal Science and Technology, Inner Mongolia University for the Nationalities, Tongliao, China
| | - Jianghong Wu
- College of Animal Science and Technology, Inner Mongolia University for the Nationalities, Tongliao, China
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Jenkins CJR, Fernando SC, Anderson CL, Aluthge ND, Castillo-Lopez E, Zanton GI, Kononoff PJ. The effects of 2-hydroxy-4-methylthio-butanoic acid supplementation on the rumen microbial population and duodenal flow of microbial nitrogen. J Dairy Sci 2020; 103:10161-10174. [PMID: 32981728 DOI: 10.3168/jds.2019-17664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Accepted: 06/08/2020] [Indexed: 11/19/2022]
Abstract
Four multiparous, lactating Holstein cows (average DIM 169.5 ± 20.5 d), fitted with ruminal and duodenal cannulas, were used in a 4 × 4 Latin square with a 2 × 2 factorial arrangement of treatments to investigate the effects of 2-hydroxy-4-methylthio-butanoic acid (HMTBA) when fed with diets differing in metabolizable protein (MP) supply and equal levels of crude protein on milk production and composition, rumen microbial activity, duodenal protein flow, and rumen bacterial community composition in vivo and in vitro. Experimental periods were 28 d in length. Cows were housed in individual tie stalls and were randomly assigned to 4 dietary treatments: low MP or high MP, supplemented with or without 25 g of HMTBA, which was top-dressed once daily at 0930 h. No interactions were observed between HMTBA and level of dietary MP, with the exception of ruminal acetate-to-propionate ratio. Milk yield was not affected by treatment and averaged 23.8 ± 2.06 kg/d. There was a tendency for increased milk protein percent in cows receiving low MP diets, averaging 3.30 ± 0.09% and 3.21 ± 0.09% for low MP and high MP, respectively. The total-tract apparent digestibility of organic matter, neutral detergent fiber, and nitrogen were greater in cows consuming the low MP diet. Rumen pH was lower in cows consuming high MP diets as well as in those consuming HMTBA. Rumen ammonia concentrations tended to be greater in cows consuming HMTBA, and volatile fatty acid concentrations were greater in cows consuming HMTBA. Duodenal dry matter flow, nitrogen flow, and microbial nitrogen flow did not differ between treatments. The bacterial community structure of cows receiving HMTBA was not affected at the phylum level. The relative abundance of bacterial phyla in vivo differed when compared with in vitro conditions for Firmicutes, Bacteroidetes, Proteobacteria, TM7, Tenericutes, Spirochaetes, SR1, and Verrucomicrobia.
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Affiliation(s)
- C J R Jenkins
- Department of Animal Science, University of Nebraska-Lincoln 68583
| | - S C Fernando
- Department of Animal Science, University of Nebraska-Lincoln 68583
| | - C L Anderson
- Department of Animal Science, University of Nebraska-Lincoln 68583
| | - N D Aluthge
- Department of Animal Science, University of Nebraska-Lincoln 68583
| | - E Castillo-Lopez
- Facultad de Estudios Superiores Cuautitlan, Universidad Nacional Autonoma de Mexico, Cuautitlan, Mexico 54714
| | - G I Zanton
- Novus International Inc., St. Charles, MO 63304
| | - P J Kononoff
- Department of Animal Science, University of Nebraska-Lincoln 68583.
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Shen J, Li Z, Yu Z, Zhu W. Effects of dietary replacement of soybean meal with dried distillers grains with solubles on the microbiota occupying different ecological niches in the rumen of growing Hu lambs. J Anim Sci Biotechnol 2020; 11:93. [PMID: 32939263 PMCID: PMC7487462 DOI: 10.1186/s40104-020-00499-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Accepted: 07/16/2020] [Indexed: 11/11/2022] Open
Abstract
Background Diet has a profound impact on the rumen microbiota, and the impact can vary among the different rumen ecological niches (REN). This study investigated the effects of dietary replacement of soybean meal (SBM) with dried distillers grains with solubles (DDGS) on the rumen microbiota occupying different REN of growing Hu lambs. After a 9-week feeding trial, 6 lambs from each dietary treatment (SBM vs. DDGS-based diets) were slaughtered for sample collection. The microbiota of the rumen solid, liquid, and epithelium fractions was examined using amplicon sequencing analysis of bacterial 16S rRNA gene, functional prediction, and qPCR. Results No interaction of dietary protein source (PS) and REN were detected for virtually all the measurements made in this study. The DDGS substitution resulted in very limited influence on bacterial community structure. However, the metabolic pathways predicted from 16S rRNA gene sequences varied greatly between SBM- and DDGS-based diets. The populations of rumen total bacteria, fungi, sulfate-reducing bacteria (SRB), and methanogens were not influenced by DDGS substitution, but the population of protozoa was reduced. The bacterial communities in rumen solid (RS) and liquid (RL) were similar in taxonomic composition but were different in relative abundance of some taxa. In contrast, the bacterial composition and relative abundance of rumen epithelium (RE) were greatly distinct from those of the RS and the RL. In alignment with the bacterial relative abundance, the metabolic pathways predicted from 16S rRNA genes also varied greatly among the different REN. The populations of total bacteria, protozoa, and methanogens attached to the RE were smaller than those in the RS and RL, and the fungal population on the rumen epithelium was smaller than that in the RS but similar to that in the RL. On the contrary, the SRB population on the RE was greater than that in the RS and RL. Conclusions Substitution of SBM with DDGS had greater impact to the protozoa than to the other microbes, and the microbial community structure and functions at different REN are distinct and niche-adapted.
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Affiliation(s)
- Junshi Shen
- Laboratory of Gastrointestinal Microbiology, Jiangsu Key Laboratory of Gastrointestinal Nutrition and Animal Health, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, 210095 China.,National Center for International Research on Animal Gut Nutrition, Nanjing Agricultural University, Nanjing, 210095 China
| | - Zhipeng Li
- Laboratory of Gastrointestinal Microbiology, Jiangsu Key Laboratory of Gastrointestinal Nutrition and Animal Health, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, 210095 China.,Department of Special Animal Nutrition and Feed Science, Institute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, 130112 China
| | - Zhongtang Yu
- Department of Animal Sciences, The Ohio State University, Columbus, OH 43210 USA
| | - Weiyun Zhu
- Laboratory of Gastrointestinal Microbiology, Jiangsu Key Laboratory of Gastrointestinal Nutrition and Animal Health, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, 210095 China.,National Center for International Research on Animal Gut Nutrition, Nanjing Agricultural University, Nanjing, 210095 China
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Smith PE, Waters SM, Kenny DA, Boland TM, Heffernan J, Kelly AK. Replacing Barley and Soybean Meal With By-products, in a Pasture Based Diet, Alters Daily Methane Output and the Rumen Microbial Community in vitro Using the Rumen Simulation Technique (RUSITEC). Front Microbiol 2020; 11:1614. [PMID: 32793146 PMCID: PMC7387412 DOI: 10.3389/fmicb.2020.01614] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Accepted: 06/19/2020] [Indexed: 01/04/2023] Open
Abstract
Plant based by-products (BP) produced from food and bioethanol industries are human inedible, but can be recycled into the global food chain by ruminant livestock. However, limited data is available on the methanogenesis potential associated with supplementing a solely BP formulated concentrate to a pastoral based diet. Therefore the objective of this in vitro study was to investigate the effects of BP inclusion rate (in a formulated concentrate) to a pasture based diet on dietary digestibility, rumen fermentation patterns, methane production and the prokaryotic microbial community composition. Diets consisted of perennial ryegrass and one of two supplementary concentrates, formulated to be isonitrogenous (16% CP) and isoenergetic (12.0 MJ/ME/kg), containing either 35% BP, barley and soybean meal (BP35) or 95% BP (BP95) offered on a 50:50 basis, however, starch, NDF and fat content varied. The BPs, included in equal proportions on a DM basis, were soyhulls, palm kernel expeller and maize dried distillers grains. The BP35 diet had greater (P < 0.05) digestibility of the chemical constituents DM, OM, CP, NDF, ADF. Greater total VFA production was seen in the BP35 diet (P < 0.05). Daily methane production (mmol/day; +22.7%) and methane output per unit of total organic matter digested (MPOMD; +20.8%) were greatest in the BP35 diet (P < 0.01). Dietary treatment influenced microbial composition (PERMANOVA; P = 0.023) with a greater relative abundance of Firmicutes (adj P < 0.01) observed in the BP35. The Firmicutes:Bacteroidetes ratio was significantly reduced in the BP95 diet (P < 0.01). The relative proportions of Proteobacteria (adj P < 0.01), Succinivibrionaceae (adj P < 0.03) and Succinivibrio (adj P = 0.053) increased in the BP95 diet. The abundance of Proteobacteria was found to be negatively associated with daily methane production (rs, −0.71; P < 0.01) and MPOMD (rs, −0.65; P < 0.01). Within Proteobacteria, the relationship of methane production was maintained with the mean abundance of Succinivibrio (rs, −0.69; P < 0.01). The abundance of the Firmicutes phyla was found to be positively correlated with both daily methane production (rs, 0.79; P < 0.001) and MPOMD (rs, 0.75; P < 0.01). Based on in vitro rumen simulation data, supplementation of an exclusively BP formulated concentrate was shown to reduce daily methane output by promoting a favorable alteration to the rumen prokaryotic community.
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Affiliation(s)
- Paul E Smith
- UCD School of Agricultural and Food Science, University College Dublin, Dublin, Ireland.,Teagasc Animal and Bioscience Research Department, Teagasc Grange, Meath, Ireland
| | - Sinéad M Waters
- Teagasc Animal and Bioscience Research Department, Teagasc Grange, Meath, Ireland
| | - David A Kenny
- UCD School of Agricultural and Food Science, University College Dublin, Dublin, Ireland.,Teagasc Animal and Bioscience Research Department, Teagasc Grange, Meath, Ireland
| | - Tommy M Boland
- UCD School of Agricultural and Food Science, University College Dublin, Dublin, Ireland
| | - John Heffernan
- UCD School of Agricultural and Food Science, University College Dublin, Dublin, Ireland
| | - Alan K Kelly
- UCD School of Agricultural and Food Science, University College Dublin, Dublin, Ireland
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5
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Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation. PLoS One 2020; 15:e0231759. [PMID: 32330150 PMCID: PMC7182223 DOI: 10.1371/journal.pone.0231759] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 03/31/2020] [Indexed: 01/07/2023] Open
Abstract
Ruminant methane production is a significant energy loss to the animal and major contributor to global greenhouse gas emissions. However, it also seems necessary for effective rumen function, so studies of anti-methanogenic treatments must also consider implications for feed efficiency. Between-animal variation in feed efficiency represents an alternative approach to reducing overall methane emissions intensity. Here we assess the effects of dietary additives designed to reduce methane emissions on the rumen microbiota, and explore relationships with feed efficiency within dietary treatment groups. Seventy-nine finishing steers were offered one of four diets (a forage/concentrate mixture supplemented with nitrate (NIT), lipid (MDDG) or a combination (COMB) compared to the control (CTL)). Rumen fluid samples were collected at the end of a 56 d feed efficiency measurement period. DNA was extracted, multiplexed 16s rRNA libraries sequenced (Illumina MiSeq) and taxonomic profiles were generated. The effect of dietary treatments and feed efficiency (within treatment groups) was conducted both overall (using non-metric multidimensional scaling (NMDS) and diversity indexes) and for individual taxa. Diet affected overall microbial populations but no overall difference in beta-diversity was observed. The relative abundance of Methanobacteriales (Methanobrevibacter and Methanosphaera) increased in MDDG relative to CTL, whilst VadinCA11 (Methanomassiliicoccales) was decreased. Trimethylamine precursors from rapeseed meal (only present in CTL) probably explain the differences in relative abundance of Methanomassiliicoccales. There were no differences in Shannon indexes between nominal low or high feed efficiency groups (expressed as feed conversion ratio or residual feed intake) within treatment groups. Relationships between the relative abundance of individual taxa and feed efficiency measures were observed, but were not consistent across dietary treatments.
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Coons EM, Fredin SM, Cotanch KW, Dann HM, Ballard CS, Brouillette JP, Grant RJ. Influence of a novel bm3 corn silage hybrid with floury kernel genetics on lactational performance and feed efficiency of Holstein cows. J Dairy Sci 2019; 102:9814-9826. [PMID: 31447165 DOI: 10.3168/jds.2019-16786] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 06/28/2019] [Indexed: 11/19/2022]
Abstract
Dry matter intake, lactation performance, and chewing behavior of multiparous Holstein cows (n = 15) fed diets containing a novel bm3 corn silage hybrid with floury kernel genetics were compared with cows fed diets containing commercially available conventional and bm3 hybrids using a replicated 3 × 3 Latin square design with 28-d periods. Cows were housed in tiestalls, milked 3 times/d, and fed a total mixed ration containing 49.0% (dry matter basis) of (1) a conventional corn silage hybrid (CONV); (2) a brown midrib bm3 hybrid (BMR); or (3) a bm3 hybrid with floury kernel genetics (BMRFL). All diets contained 6.3% hay crop silage and 44.7% concentrate. Dietary nutrient composition averaged 32.7% neutral detergent fiber (NDF) and 26.3 starch (% of dry matter). Data were analyzed by ANOVA using the MIXED procedure in SAS (SAS Institute Inc., Cary, NC). The dry matter intake was greater for cows fed BMR (28.0 kg/d) compared with CONV (26.8 kg/d), whereas dry matter intake for cows fed BMRFL was intermediate (27.6 kg/d). Energy-corrected milk (ECM) yield was greater for cows fed BMR (50.3 kg/d) and BMRFL (51.8 kg/d) compared with CONV (47.2 kg/d). Milk fat yield was higher for cows fed BMRFL (1.87 kg/d) compared with CONV (1.74 kg/d) and BMR (1.80 kg/d). Milk protein yield was greater for cows fed BMR (1.49 kg/d) and BMRFL (1.54 kg/d) compared with CONV (1.36 kg/d). Milk urea-N was reduced for cows fed BMR (11.61 mg/dL) and BMRFL (11.16 mg/dL) compared with CONV (13.60 mg/dL). Feed efficiency (ECM/dry matter intake) was higher for cows fed BMRFL (1.87) compared with CONV (1.76) and BMR (1.79). Milk N efficiency was greatest for cows fed BMRFL (40.4%) followed by BMR (38.1%) and finally CONV (35.3%). Cows fed CONV chewed 5 min more per kilograms of NDF consumed than cows fed either of the BMR hybrids. No differences were observed among diets in apparent total-tract digestibility of NDF (58.1%) or starch (99.3%). Overall lactational performance was enhanced for cows fed diets containing both BMR and BMRFL hybrids versus CONV. In addition, feeding the BMRFL corn silage improved efficiency of component-corrected milk production and milk N efficiency compared with the CONV and BMR silages.
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Affiliation(s)
- E M Coons
- William H. Miner Agricultural Research Institute, Chazy, NY 12921
| | - S M Fredin
- William H. Miner Agricultural Research Institute, Chazy, NY 12921
| | - K W Cotanch
- William H. Miner Agricultural Research Institute, Chazy, NY 12921
| | - H M Dann
- William H. Miner Agricultural Research Institute, Chazy, NY 12921
| | - C S Ballard
- William H. Miner Agricultural Research Institute, Chazy, NY 12921
| | | | - R J Grant
- William H. Miner Agricultural Research Institute, Chazy, NY 12921.
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Ranathunga SD, Kalscheur KF, Herrick KJ. Ruminal fermentation, kinetics, and total-tract digestibility of lactating dairy cows fed distillers dried grains with solubles in low- and high-forage diets. J Dairy Sci 2019; 102:7980-7996. [PMID: 31255271 DOI: 10.3168/jds.2018-15771] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2018] [Accepted: 04/27/2019] [Indexed: 02/04/2023]
Abstract
The objective of this study was to investigate the effects of concentrations of forages and corn distillers dried grains with solubles (DDGS) on ruminal fermentation, ruminal kinetics, and total-tract digestibility of nutrients in lactating dairy cows. Four lactating Holstein cows with ruminal cannulas were assigned to a 4 × 4 Latin square in a 2 × 2 factorial arrangement of treatments. Diets were formulated to contain low forage [LF; 17% forage neutral detergent fiber (NDF)] or high forage (HF; 24.5% forage NDF) and DDGS at 0 or 18% (0DG or 18DG) of diet dry matter (DM). Intake of DM was not affected by the diets. Daily mean ruminal pH was affected by forage NDF × DDGS interactions, as the lowest ruminal pH was observed among cows fed LF18DG (6.02). Apparent total-tract digestibility for DM, organic matter, crude protein, NDF, acid detergent fiber, and starch was not affected by diets. Cows fed LF diets had a greater total volatile fatty acid concentration compared with cows fed HF (122 vs. 116 mM). Molar proportions of acetate were greater for HF compared with that of LF diets (62.6 vs. 57.5 mmol/100 mmol) and greater for 0DG diet compared with that of 18DG diets (61.3 vs. 58.7 mmol/100 mmol) diets. The molar proportion of propionate was affected by forage × DDGS interaction as the greatest propionate molar proportion was observed with cows fed LF18DG diet (27.7 mmol/100 mmol). Also, molar proportion of butyrate was affected by forage × DDGS interaction, as the greatest butyrate molar proportion was observed in cows fed HF18DG diet (13.5 mmol/100 mmol). Average fractional dilution rate for all diets was 11.9%/h and was not affected by diets. Fractional passage rate of the solid phase was greater for HF than for LF (4.40 vs. 3.76%/h). The ruminal retention time of solid phase was greater for LF compared with HF diets (27.3 vs. 23.3 h). Fractional passage rate of DDGS was affected by forage × DG interaction, as the highest fractional passage rate of DDGS was observed with cows fed HF18DG diet (7.72%/h). Our results demonstrated that concentrations of forage, DDGS, and their interaction influence ruminal degradation and kinetics of diets fed. Diets formulated at 17% forage NDF at 17% (DM basis) can decrease milk fat concentration compared with diets formulated at 25% forage NDF. Additionally, feeding DDGS at 18% DM basis to lactating dairy cows did not affect milk fat concentration or yield.
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Affiliation(s)
| | - Kenneth F Kalscheur
- Dairy and Food Science Department, South Dakota State University, Brookings 57007; US Dairy Forage Research Center, USDA-Agricultural Research Service, Madison, WI 53706.
| | - Kevin J Herrick
- Dairy and Food Science Department, South Dakota State University, Brookings 57007
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8
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Ranathunga SD, Kalscheur KF, Anderson JL, Herrick KJ. Production of dairy cows fed distillers dried grains with solubles in low- and high-forage diets. J Dairy Sci 2018; 101:10886-10898. [PMID: 30292550 DOI: 10.3168/jds.2017-14258] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Accepted: 08/20/2018] [Indexed: 12/17/2023]
Abstract
The objective of the study was to investigate the effects of dietary forage and distillers dried grains with solubles (DDGS) concentration on the performance of lactating dairy cows. Twelve Holstein cows were blocked by parity and milk production and assigned to replicated 4 × 4 Latin squares with a 2 × 2 factorial arrangement of treatments. Diets were formulated to contain low forage [LF; 17% forage neutral detergent fiber (NDF)] or high forage (HF; 24.5% forage NDF) and DDGS at 0 or 18% of diet dry matter. The forage portion of the diet consisted of 80% corn silage and 20% alfalfa hay (dry matter basis). A portion of the ground corn and all of the expeller soybean meal and extruded soybeans from 0% DDGS diets were replaced with DDGS to formulate 18% DDGS diets. Overall, we found no interactions of forage × DDGS concentrations for any of the production measures. We observed no effect of diet on dry matter intake. Milk yield was greater when cows were fed LF diets compared with HF diets (43.3 vs. 41.5 kg/d). Milk fat concentration (3.03 vs. 3.38%) was lower for cows fed LF diets compared with HF diets, whereas protein concentration (3.11 vs. 2.98%) and yield (1.34 vs. 1.24 kg/d) were greater for cows fed LF diets compared with HF diets. Yields of fat, total solids, energy-corrected milk, and feed efficiency were not affected by diets. Cows partitioned equally for milk, maintenance, and body reserves. Replacing starch from ground corn and protein from soybean feeds with DDGS at either 17 or 24.5% of forage NDF concentration in the diet was cost-effective and did not affect the production performance of lactating dairy cows.
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Affiliation(s)
| | - Kenneth F Kalscheur
- Dairy and Food Science Department, South Dakota State University, Brookings 57007.
| | - Jill L Anderson
- Dairy and Food Science Department, South Dakota State University, Brookings 57007
| | - Kevin J Herrick
- Dairy and Food Science Department, South Dakota State University, Brookings 57007
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9
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Castillo-Lopez E, Jenkins CJR, Aluthge ND, Tom W, Kononoff PJ, Fernando SC. The effect of regular or reduced-fat distillers grains with solubles on rumen methanogenesis and the rumen bacterial community. J Appl Microbiol 2017; 123:1381-1395. [PMID: 28891118 DOI: 10.1111/jam.13583] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2017] [Revised: 08/16/2017] [Accepted: 09/02/2017] [Indexed: 12/18/2022]
Abstract
AIMS The effect of feeding dried distillers grains with solubles (DDGS) or reduced-fat DDGS (RFDG) on ruminal methanogenesis and the rumen bacterial community of dairy cattle was evaluated. METHODS AND RESULTS Treatments were CONT, a diet with no distillers grains; DG, inclusion of 20% DDGS; rfDG, inclusion of 20% RFDG; and MIX, inclusion of 10% DDGS and 10% RFDG. Methane emission was measured; rumen bacterial community was evaluated by sequencing the V4 region of the 16S rRNA gene. Total methane production remained unaffected. However, feeding distillers grains tended to reduce methanogenesis per unit of feed intake, decreased the abundance of the phylum Bacteroidetes and tended to increase Firmicutes. The abundance of Prevotellaceae positively correlated with feed intake; methane emission was positively correlated with the abundance of Prevotellaceae and was negatively correlated with the abundance of Succinivibrionaceae. CONCLUSIONS DDGS or RFDG may reduce methanogenesis per unit of feed intake; shifts in the abundance of predominant ruminal bacterial families may influence methane formation, likely because of their role on hydrogen liberation and utilization pathways. SIGNIFICANCE AND IMPACT OF THE STUDY Replacing corn and soybean meal with DDGS or RFDG in dairy rations may reduce the proportion of dietary energy wasted as methane, without detrimental effects on the overall bacterial population.
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Affiliation(s)
- E Castillo-Lopez
- Facultad de Estudios Superiores Cuautitlan, Universidad Nacional Autonoma de Mexico, Cuautitlan, Mexico
| | - C J R Jenkins
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - N D Aluthge
- Food Science and Technology Department, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - W Tom
- Department of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - P J Kononoff
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - S C Fernando
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, USA
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10
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Johnson ACB, Reed KF, Kebreab E. Short communication: Evaluation of nitrogen excretion equations from cattle. J Dairy Sci 2016; 99:7669-7678. [PMID: 27320670 DOI: 10.3168/jds.2015-10730] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2015] [Accepted: 04/30/2016] [Indexed: 01/20/2023]
Abstract
Nitrogen excretion in dairy manure is a precursor for N2O and NH3 formation in livestock housing, manure storage facilities, and after manure is applied to land. Nitrous oxide is a major contributor to greenhouse gas emissions, and reducing N output from dairy production facilities can reduce the amount of anthropogenic N2O entering the atmosphere. The objective of the study was to conduct a comprehensive evaluation of extant prediction models for N excretion in feces and urine using extensive literature data. A total of 45 N excretion equations were evaluated for lactating cows, heifers, and nonlactating cows and steers. These equations were evaluated with 215 treatment means from 69 published studies collected over 20 yr from 1995 to 2015. Two evaluation methods were used: the root mean square prediction error and the concordance correlation coefficient. Equations constructed using a more rigorous development process fared better than older extant equations. Equations for heifers and nonlactating cows had greater error of prediction compared with equations used for lactating cows. This could be due to limited amount of data available for construction and evaluation of the equations. Urinary N equations had greater prediction errors than other forms of excretion, possibly due to high variability in urinary N excretion and challenges in urine collection. Fecal N equations had low error bias and reached an acceptable level of precision and accuracy.
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Affiliation(s)
- A C B Johnson
- Department of Animal Science, University of California, Davis 95616
| | - K F Reed
- Department of Animal Science, University of California, Davis 95616
| | - E Kebreab
- Department of Animal Science, University of California, Davis 95616.
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11
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Ramirez-Ramirez H, Castillo Lopez E, Jenkins C, Aluthge N, Anderson C, Fernando S, Harvatine K, Kononoff P. Reduced-fat dried distillers grains with solubles reduces the risk for milk fat depression and supports milk production and ruminal fermentation in dairy cows. J Dairy Sci 2016; 99:1912-1928. [DOI: 10.3168/jds.2015-9712] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2015] [Accepted: 10/24/2015] [Indexed: 11/19/2022]
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Granja-Salcedo YT, Ribeiro Júnior CS, de Jesus RB, Gomez-Insuasti AS, Rivera AR, Messana JD, Canesin RC, Berchielli TT. Effect of different levels of concentrate on ruminal microorganisms and rumen fermentation in Nellore steers. Arch Anim Nutr 2015; 70:17-32. [DOI: 10.1080/1745039x.2015.1117562] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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13
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Ferraretto L, Shaver R. Effects of whole-plant corn silage hybrid type on intake, digestion, ruminal fermentation, and lactation performance by dairy cows through a meta-analysis. J Dairy Sci 2015; 98:2662-75. [DOI: 10.3168/jds.2014-9045] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Accepted: 12/23/2014] [Indexed: 12/22/2022]
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First insights into the microbial diversity in the omasum and reticulum of bovine using Illumina sequencing. J Appl Genet 2015; 56:393-401. [PMID: 25604266 PMCID: PMC4543427 DOI: 10.1007/s13353-014-0258-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Revised: 11/11/2014] [Accepted: 11/16/2014] [Indexed: 10/26/2022]
Abstract
The digestive systems of mammals harbor a complex gut microbiome, comprising bacteria and other microorganisms that confer metabolic and immunological benefits to the host. Ruminants that digest plant-based foods have a four-compartment stomach consisting of the rumen, reticulum, omasum, and abomasum. The microorganisms in the stomach are essential for providing the host with critical nutrients. However, the majority of these microorganisms are unknown species. The microbiome of the stomach is diverse, and the majority of these organisms cannot be cultured. Next-generation sequencing (NGS) combined with bioinformatic analysis tools have allowed the dissection of the composition of the microbiome in samples collected from a specific environment. In this study, for the first time, the bacterial composition in two compartments, the reticulum and the omasum, of bovine were analyzed using a metagenomic approach and compared to the bacterial composition of the rumen. These data will assist in understanding the biology of ruminants and benefit the agricultural industry. The diversity and composition of the bacterial community in samples collected from the rumen, reticulum, and omasum of bovines in the Changchun Region of Northeast China were analyzed by sequencing the V3 region of the 16S rRNA gene using a barcoded Illumina paired-end sequencing technique, and the primary composition of the microbiome in the rumen, reticulum, and omasum of the bovines was determined. These microbiomes contained 17 phyla and 107 genera in all three samples. Five phyla, Bacteroidetes, Firmicutes, Proteobacteria, Spirochaetes, and Lentisphaerae, were the most abundant taxonomic groups. Additionally, the different stomach compartments harbored different compositions of the microorganisms.
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Ferraretto L, Fonseca A, Sniffen C, Formigoni A, Shaver R. Effect of corn silage hybrids differing in starch and neutral detergent fiber digestibility on lactation performance and total-tract nutrient digestibility by dairy cows. J Dairy Sci 2015; 98:395-405. [DOI: 10.3168/jds.2014-8232] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Accepted: 10/08/2014] [Indexed: 11/19/2022]
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Sousa DO, Mesquita BS, Diniz-Magalhães J, Bueno ICS, Mesquita LG, Silva LFP. Effect of fiber digestibility and conservation method on feed intake and the ruminal ecosystem of growing steers1. J Anim Sci 2014; 92:5622-34. [DOI: 10.2527/jas.2014-8016] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- D. O. Sousa
- Department of Animal Science, School of Veterinary Medicine, Universidade de São Paulo, Pirassununga, São Paulo, Brazil
| | | | - J. Diniz-Magalhães
- Department of Animal Science, School of Veterinary Medicine, Universidade de São Paulo, Pirassununga, São Paulo, Brazil
| | - I. C. S. Bueno
- Department of Animal Science, Faculty of Animal Science and Food Engineering, Universidade de São Paulo, Pirassununga, São Paulo, Brazil
| | - L. G. Mesquita
- Department of Animal Science, School of Veterinary Medicine, Universidade de São Paulo, Pirassununga, São Paulo, Brazil
| | - L. F. P. Silva
- Department of Animal Science, School of Veterinary Medicine, Universidade de São Paulo, Pirassununga, São Paulo, Brazil
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17
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Golder HM, Denman SE, McSweeney C, Wales WJ, Auldist MJ, Wright MM, Marett LC, Greenwood JS, Hannah MC, Celi P, Bramley E, Lean IJ. Effects of partial mixed rations and supplement amounts on milk production and composition, ruminal fermentation, bacterial communities, and ruminal acidosis. J Dairy Sci 2014; 97:5763-85. [PMID: 24997657 DOI: 10.3168/jds.2014-8049] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Accepted: 05/16/2014] [Indexed: 11/19/2022]
Abstract
Late-lactation Holstein cows (n=144) that were offered 15kg dry matter (DM)/cow per day of perennial ryegrass to graze were randomized into 24 groups of 6. Each group contained a fistulated cow and groups were allocated to 1 of 3 feeding strategies: (1) control (10 groups): cows were fed crushed wheat grain twice daily in the milking parlor and ryegrass silage at pasture; (2) partial mixed ration (PMR; 10 groups): PMR that was isoenergetic to the control diet and fed twice daily on a feed pad; (3) PMR+canola (4 groups): a proportion of wheat in the PMR was replaced with canola meal to produce more estimated metabolizable protein than other groups. Supplements were fed to the control and PMR cows at 8, 10, 12, 14, or 16kg of DM/d, and to the PMR+canola cows at 14 or 16kg of DM/d. The PMR-fed cows had a lower incidence of ruminal acidosis compared with controls, and ruminal acidosis increased linearly and quadratically with supplement fed. Yield of milk fat was highest in the PMR+canola cows fed 14 or 16kg of total supplement DM/d, followed by the PMR-fed cows, and was lowest in controls fed at these amounts; a similar trend was observed for milk fat percentage. Milk protein yield was higher in the PMR+canola cows fed 14 or 16kg of total supplement DM/d. Milk yield and milk protein percentage were not affected by feeding strategy. Milk, energy-corrected milk, and milk protein yields increased linearly with supplement fed, whereas milk fat percentage decreased. Ruminal butyrate and d-lactate concentrations, acetate-to-propionate ratio, (acetate + butyrate)/propionate, and pH increased in PMR-fed cows compared with controls for all supplement amounts, whereas propionate and valerate concentrations decreased. Ruminal acetate, butyrate, and ammonia concentrations, acetate-to-propionate ratio, (acetate + butyrate)/propionate, and pH linearly decreased with amounts of supplement fed. Ruminal propionate concentration linearly increased and valerate concentration linearly and quadratically increased with supplement feeding amount. The Bacteroidetes and Firmicutes were the dominant bacterial phyla identified. The Prevotellaceae, Ruminococcaceae, and Lachnospiraceae were the dominant bacterial families, regardless of feeding group, and were influenced by feeding strategy, supplement feeding amount, or both. The Veillonellaceae family decreased in relative abundance in PMR-fed cows compared with controls, and the Streptococcaeae and Lactobacillaceae families were present in only minor relative abundances, regardless of feeding group. Despite large among- and within-group variation in bacterial community composition, distinct bacterial communities occurred among feeding strategies, supplement amounts, and sample times and were associated with ruminal fermentation measures. Control cows fed 16kg of DM of total supplement per day had the most distinct ruminal bacterial community composition. Bacterial community composition was most significantly associated with supplement feeding amount and ammonia, butyrate, valerate, and propionate concentrations. Feeding supplements in a PMR reduced the incidence of ruminal acidosis and altered ruminal bacterial communities, regardless of supplement feeding amount, but did not result in increased milk measures compared with isoenergetic control diets component-fed to late-lactation cows.
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Affiliation(s)
- H M Golder
- The Dairy Science Group, Faculty of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia 2570; SBScibus, Camden, New South Wales, Australia 2570.
| | - S E Denman
- CSIRO Animal, Food and Health Services, Queensland Bioscience Precinct, St. Lucia, Queensland, Australia 4067
| | - C McSweeney
- CSIRO Animal, Food and Health Services, Queensland Bioscience Precinct, St. Lucia, Queensland, Australia 4067
| | - W J Wales
- Farming Systems Research Division, Department of Environment and Primary Industries, Ellinbank, Victoria, Australia 3821
| | - M J Auldist
- Farming Systems Research Division, Department of Environment and Primary Industries, Ellinbank, Victoria, Australia 3821
| | - M M Wright
- Farming Systems Research Division, Department of Environment and Primary Industries, Ellinbank, Victoria, Australia 3821
| | - L C Marett
- Farming Systems Research Division, Department of Environment and Primary Industries, Ellinbank, Victoria, Australia 3821
| | - J S Greenwood
- Farming Systems Research Division, Department of Environment and Primary Industries, Ellinbank, Victoria, Australia 3821
| | - M C Hannah
- Farming Systems Research Division, Department of Environment and Primary Industries, Ellinbank, Victoria, Australia 3821
| | - P Celi
- The Dairy Science Group, Faculty of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia 2570; Melbourne School of Land and Environment, The University of Melbourne, Parkville, Victoria, Australia 3010
| | - E Bramley
- School of Veterinary and Biomedical Sciences, Murdoch University, Murdoch, Western Australia 6150
| | - I J Lean
- The Dairy Science Group, Faculty of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia 2570; SBScibus, Camden, New South Wales, Australia 2570
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McCann JC, Wickersham TA, Loor JJ. High-throughput Methods Redefine the Rumen Microbiome and Its Relationship with Nutrition and Metabolism. Bioinform Biol Insights 2014; 8:109-25. [PMID: 24940050 PMCID: PMC4055558 DOI: 10.4137/bbi.s15389] [Citation(s) in RCA: 113] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2014] [Revised: 04/28/2014] [Accepted: 04/29/2014] [Indexed: 12/30/2022] Open
Abstract
Diversity in the forestomach microbiome is one of the key features of ruminant animals. The diverse microbial community adapts to a wide array of dietary feedstuffs and management strategies. Understanding rumen microbiome composition, adaptation, and function has global implications ranging from climatology to applied animal production. Classical knowledge of rumen microbiology was based on anaerobic, culture-dependent methods. Next-generation sequencing and other molecular techniques have uncovered novel features of the rumen microbiome. For instance, pyrosequencing of the 16S ribosomal RNA gene has revealed the taxonomic identity of bacteria and archaea to the genus level, and when complemented with barcoding adds multiple samples to a single run. Whole genome shotgun sequencing generates true metagenomic sequences to predict the functional capability of a microbiome, and can also be used to construct genomes of isolated organisms. Integration of high-throughput data describing the rumen microbiome with classic fermentation and animal performance parameters has produced meaningful advances and opened additional areas for study. In this review, we highlight recent studies of the rumen microbiome in the context of cattle production focusing on nutrition, rumen development, animal efficiency, and microbial function.
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Affiliation(s)
- Joshua C McCann
- Department of Animal Sciences, University of Illinois, Urbana, IL, USA
| | - Tryon A Wickersham
- Department of Animal Science, Texas A&M University, College Station, TX, USA
| | - Juan J Loor
- Department of Animal Sciences, University of Illinois, Urbana, IL, USA
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Castillo-Lopez E, Ramirez Ramirez H, Klopfenstein TJ, Anderson CL, Aluthge ND, Fernando SC, Jenkins T, Kononoff PJ. Effect of feeding dried distillers grains with solubles on ruminal biohydrogenation, intestinal fatty acid profile, and gut microbial diversity evaluated through DNA pyro-sequencing. J Anim Sci 2014; 92:733-43. [DOI: 10.2527/jas.2013-7223] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- E. Castillo-Lopez
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln 68583-0908
| | - H.A. Ramirez Ramirez
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln 68583-0908
| | - T. J. Klopfenstein
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln 68583-0908
| | - C. L. Anderson
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln 68583-0908
| | - N. D. Aluthge
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln 68583-0908
| | - S. C. Fernando
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln 68583-0908
| | - T. Jenkins
- Department of Animal & Veterinary Sciences, Clemson University, Clemson, SC 29634
| | - P. J. Kononoff
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln 68583-0908
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Paz HA, Castillo-Lopez E, Ramirez-Ramirez HA, Christensen DA, Klopfenstein TJ, Kononoff PJ. Invited Review: Ethanol co-products for dairy cows: there goes our starch … now what? CANADIAN JOURNAL OF ANIMAL SCIENCE 2013. [DOI: 10.4141/cjas2013-048] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Paz, H. A., Castillo-Lopez, E., Ramirez-Ramirez, H. A., Christensen, D. A., Klopfenstein, T. J. and Kononoff, P. J. 2013. Invited Review: Ethanol co-products for dairy cows: there goes our starch … now what? Can. J. Anim. Sci. 93: 407–425. The rise of the grain-ethanol industry has resulted in a dramatic increase in the availability of feed co-products namely, distillers’ grains with solubles (DG). The cost of feeds that have traditionally been used for energy continues to increase and there is a need to understand the potential impact of replacing these feeds with DG on milk yield and composition. Using the Dairy National Research Council (2001) model and data from a total of 25 published studies (81 observations), we used a meta-analytical procedure to evaluate the impact of feeding corn milling co-products on lactating dairy cows. Based on our model, the inclusion of DG did not affect dry matter intake (P=0.35) but a trend for an increase in milk yield was observed (P=0. 10). Additionally, the percentages of milk fat and protein in the milk were not affected (P=0.24 and 0.25, respectively). The modeled daily rumen outflow of Lys in grams was significantly (P<0.01) reduced and Met was not affected (P=0.79) when DG were included. The error associated with net energy of lactation allowable milk averaged 5.0±1.0 kg d−1and was not affected by DG (P=0.79) but the error associated with metabolizable protein allowable milk tended (P=0.10) to be higher for cows consuming DG by 1.4±1.2 kg d−1.
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Affiliation(s)
- H. A. Paz
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, 68583-0908, USA
| | - E. Castillo-Lopez
- Department of Animal & Poultry Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada S7N 5A8
| | - H. A. Ramirez-Ramirez
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, 68583-0908, USA
| | - D. A. Christensen
- Department of Animal & Poultry Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada S7N 5A8
| | - T. J. Klopfenstein
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, 68583-0908, USA
| | - P. J. Kononoff
- Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, 68583-0908, USA
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Holt M, Neal K, Eun JS, Young A, Hall J, Nestor K. Corn silage hybrid type and quality of alfalfa hay affect dietary nitrogen utilization by early lactating dairy cows. J Dairy Sci 2013; 96:6564-76. [DOI: 10.3168/jds.2013-6689] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2013] [Accepted: 07/04/2013] [Indexed: 11/19/2022]
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Mullins CR, Mamedova LK, Carpenter AJ, Ying Y, Allen MS, Yoon I, Bradford BJ. Analysis of rumen microbial populations in lactating dairy cattle fed diets varying in carbohydrate profiles and Saccharomyces cerevisiae fermentation product. J Dairy Sci 2013; 96:5872-81. [PMID: 23849646 DOI: 10.3168/jds.2013-6775] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Accepted: 05/25/2013] [Indexed: 01/12/2023]
Abstract
The rumen microbial ecosystem is a critical factor that links diets to bovine physiology and productivity; however, information about dietary effects on microbial populations has generally been limited to small numbers of samples and qualitative assessment. To assess whether consistent shifts in microbial populations occur in response to common dietary manipulations in dairy cattle, samples of rumen contents were collected from 2 studies for analysis by quantitative real-time PCR (qPCR). In one study, lactating Holstein cows (n=8) were fed diets in which a nonforage fiber source replaced an increasing proportion of forages and concentrates in a 4×4 Latin square design, and samples of ruminal digesta were collected at 9-h intervals over 3 d at the end of each period. In the second study, lactating Holstein cows (n=15) were fed diets with or without the inclusion of a Saccharomyces cerevisiae fermentation product (SCFP) in a crossover design. In this study, rumen liquid and solid samples were collected during total rumen evacuations before and after feeding in a 42-h period. In total, 146 samples of ruminal digesta were used for microbial DNA isolation and analysis by qPCR. Validated primer sets were used to quantify total bacterial and anaerobic fungal populations as well as 12 well-studied bacterial taxa. The relative abundance of the target populations was similar to those previously reported. No significant treatment effects were observed for any target population. A significant interaction of treatment and dry matter intake was observed, however, for the abundance of Eubacterium ruminantium. Increasing dry matter intake was associated with a quadratic decrease in E. ruminantium populations in control animals but with a quadratic increase in E.ruminantium populations in cows fed SCFP. Analysis of sample time effects revealed that Fibrobacter succinogenes and fungal populations were more abundant postfeeding, whereas Ruminococcus albus tended to be more abundant prefeeding. Seven of the target taxa were more abundant in either the liquid or solid fractions of ruminal digesta. By accounting for the total mass of liquid and solid fractions in the rumen and the relative abundance of total bacteria in each fraction, it was estimated that 92% of total bacteria were found in the solid digesta fraction.
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Affiliation(s)
- C R Mullins
- Department of Animal Sciences and Industry, Kansas State University, Manhattan, Kansas 66506, USA
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