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Kołodziej T, Mielnicka A, Dziob D, Chojnacka AK, Rawski M, Mazurkiewicz J, Rajfur Z. Morphomigrational description as a new approach connecting cell's migration with its morphology. Sci Rep 2023; 13:11006. [PMID: 37419901 PMCID: PMC10328925 DOI: 10.1038/s41598-023-35827-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 05/24/2023] [Indexed: 07/09/2023] Open
Abstract
The examination of morphology and migration of cells plays substantial role in understanding the cellular behaviour, being described by plethora of quantitative parameters and models. These descriptions, however, treat cell migration and morphology as independent properties of temporal cell state, while not taking into account their strong interdependence in adherent cells. Here we present the new and simple mathematical parameter called signed morphomigrational angle (sMM angle) that links cell geometry with translocation of cell centroid, considering them as one morphomigrational behaviour. The sMM angle combined with pre-existing quantitative parameters enabled us to build a new tool called morphomigrational description, used to assign the numerical values to several cellular behaviours. Thus, the cellular activities that until now were characterized using verbal description or by complex mathematical models, are described here by a set of numbers. Our tool can be further used in automatic analysis of cell populations as well as in studies focused on cellular response to environmental directional signals.
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Affiliation(s)
- Tomasz Kołodziej
- Department of Pharmaceutical Biophysics, Faculty of Pharmacy, Jagiellonian University Medical College, ul. Medyczna 9, 30-688, Kraków, Poland.
- Department of Molecular and Interfacial Biophysics, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, ul. Lojasiewicza 11, 30-348, Kraków, Poland.
| | - Aleksandra Mielnicka
- Department of Molecular and Interfacial Biophysics, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, ul. Lojasiewicza 11, 30-348, Kraków, Poland
- BRAINCITY, Laboratory of Neurobiology, The Nencki Institute of Experimental Biology, PAS, ul. Ludwika Pasteura 3, 02-093, Warsaw, Poland
| | - Daniel Dziob
- Department of Pharmaceutical Biophysics, Faculty of Pharmacy, Jagiellonian University Medical College, ul. Medyczna 9, 30-688, Kraków, Poland
| | - Anna Katarzyna Chojnacka
- Department of Molecular and Interfacial Biophysics, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, ul. Lojasiewicza 11, 30-348, Kraków, Poland
- Cellular Signalling and Cytoskeletal Function Laboratory, The Francis Crick Institute, 1 Midland Road, NW1 1AT, London, United Kingdom
| | - Mateusz Rawski
- Laboratory of Inland Fisheries and Aquaculture, Department of Zoology, Faculty of Veterinary Medicine and Animal Science, Poznań University of Life Sciences, ul. Wojska Polskiego 71C, 60-625, Poznań, Poland
| | - Jan Mazurkiewicz
- Laboratory of Inland Fisheries and Aquaculture, Department of Zoology, Faculty of Veterinary Medicine and Animal Science, Poznań University of Life Sciences, ul. Wojska Polskiego 71C, 60-625, Poznań, Poland
| | - Zenon Rajfur
- Department of Molecular and Interfacial Biophysics, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, ul. Lojasiewicza 11, 30-348, Kraków, Poland.
- Jagiellonian Center of Biomedical Imaging, Jagiellonian University, 30-348, Kraków, Poland.
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Byrd TF, Hoang LT, Kim EG, Pfister ME, Werner EM, Arndt SE, Chamberlain JW, Hughey JJ, Nguyen BA, Schneibel EJ, Wertz LL, Whitfield JS, Wikswo JP, Seale KT. The microfluidic multitrap nanophysiometer for hematologic cancer cell characterization reveals temporal sensitivity of the calcein-AM efflux assay. Sci Rep 2014; 4:5117. [PMID: 24873950 PMCID: PMC4038811 DOI: 10.1038/srep05117] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2013] [Accepted: 05/06/2014] [Indexed: 01/21/2023] Open
Abstract
Cytometric studies utilizing flow cytometry or multi-well culture plate fluorometry are often limited by a deficit in temporal resolution and a lack of single cell consideration. Unfortunately, many cellular processes, including signaling, motility, and molecular transport, occur transiently over relatively short periods of time and at different magnitudes between cells. Here we demonstrate the multitrap nanophysiometer (MTNP), a low-volume microfluidic platform housing an array of cell traps, as an effective tool that can be used to study individual unattached cells over time with precise control over the intercellular microenvironment. We show how the MTNP platform can be used for hematologic cancer cell characterization by measuring single T cell levels of CRAC channel modulation, non-translational motility, and ABC-transporter inhibition via a calcein-AM efflux assay. The transporter data indicate that Jurkat T cells exposed to indomethacin continue to accumulate fluorescent calcein for over 60 minutes after calcein-AM is removed from the extracellular space.
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Affiliation(s)
- Thomas F Byrd
- 1] Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA [2] University of New Mexico School of Medicine, Albuquerque, NM, 87131, USA
| | - Loi T Hoang
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Eric G Kim
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Matthew E Pfister
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Erik M Werner
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Stephen E Arndt
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Jeffrey W Chamberlain
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Jacob J Hughey
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Bao A Nguyen
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Erik J Schneibel
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Laura L Wertz
- Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA
| | - Jonathan S Whitfield
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, 37235, USA
| | - John P Wikswo
- 1] Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA [2] Vanderbilt Institute for Integrative Biosystems Research and Education, Vanderbilt University, Nashville, TN, 37235, USA [3] Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, 37235, USA [4] Department of Physics and Astronomy, Vanderbilt University, Nashville, TN, 37235, USA [5] Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, 37232, USA
| | - Kevin T Seale
- 1] Searle Systems Biology and Bioengineering Undergraduate Research Experience, Vanderbilt University, Nashville, TN, 37235, USA [2] Vanderbilt Institute for Integrative Biosystems Research and Education, Vanderbilt University, Nashville, TN, 37235, USA [3] Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, 37235, USA
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Hashimoto T, Kojima K, Otaka A, Takeda YS, Tomita N, Tamada Y. Quantitative Evaluation of Fibroblast Migration on a Silk Fibroin Surface and TGFBI Gene Expression. JOURNAL OF BIOMATERIALS SCIENCE-POLYMER EDITION 2012; 24:158-69. [DOI: 10.1163/156856212x629025] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- Tomoko Hashimoto
- a Silk Materials Research Unit, Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences , 1-2 Owashi, Tsukuba , Ibaraki , 305-8634 , Japan
| | - Katsura Kojima
- a Silk Materials Research Unit, Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences , 1-2 Owashi, Tsukuba , Ibaraki , 305-8634 , Japan
| | - Akihisa Otaka
- b Department of Mechanical Engineering , Graduate School of Engineering, Kyoto University , Yoshida-Honmachi, Sakyo-ku , Kyoto , 606-8501 , Japan
| | - Yuji S. Takeda
- b Department of Mechanical Engineering , Graduate School of Engineering, Kyoto University , Yoshida-Honmachi, Sakyo-ku , Kyoto , 606-8501 , Japan
| | - Naohide Tomita
- b Department of Mechanical Engineering , Graduate School of Engineering, Kyoto University , Yoshida-Honmachi, Sakyo-ku , Kyoto , 606-8501 , Japan
| | - Yasushi Tamada
- a Silk Materials Research Unit, Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences , 1-2 Owashi, Tsukuba , Ibaraki , 305-8634 , Japan
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Zengel P, Nguyen-Hoang A, Schildhammer C, Zantl R, Kahl V, Horn E. μ-Slide Chemotaxis: a new chamber for long-term chemotaxis studies. BMC Cell Biol 2011; 12:21. [PMID: 21592329 PMCID: PMC3118187 DOI: 10.1186/1471-2121-12-21] [Citation(s) in RCA: 118] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2010] [Accepted: 05/18/2011] [Indexed: 01/02/2023] Open
Abstract
BACKGROUND Effective tools for measurement of chemotaxis are desirable since cell migration towards given stimuli plays a crucial role in tumour metastasis, angiogenesis, inflammation, and wound healing. As for now, the Boyden chamber assay is the longstanding "gold-standard" for in vitro chemotaxis measurements. However, support for live cell microscopy is weak, concentration gradients are rather steep and poorly defined, and chemotaxis cannot be distinguished from migration in a single experiment. RESULTS Here, we describe a novel all-in-one chamber system for long-term analysis of chemotaxis in vitro that improves upon many of the shortcomings of the Boyden chamber assay. This chemotaxis chamber was developed to provide high quality microscopy, linear concentration gradients, support for long-term assays, and observation of slowly migrating cells via video microscopy. AlexaFluor 488 dye was used to demonstrate the establishment, shape and time development of linear chemical gradients. Human fibrosarcoma cell line HT1080 and freshly isolated human umbilical vein endothelial cells (HUVEC) were used to assess chemotaxis towards 10% fetal calf serum (FCS) and FaDu cells' supernatant. Time-lapse video microscopy was conducted for 48 hours, and cell tracking and analysis was performed using ImageJ plugins. The results disclosed a linear steady-state gradient that was reached after approximately 8 hours and remained stable for at least 48 hours. Both cell types were chemotactically active and cell movement as well as cell-to-cell interaction was assessable. CONCLUSIONS Compared to the Boyden chamber assay, this innovative system allows for the generation of a stable gradient for a much longer time period as well as for the tracking of cell locomotion along this gradient and over long distances. Finally, random migration can be distinguished from primed and directed migration along chemotactic gradients in the same experiment, a feature, which can be qualified via cell morphology imaging.
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Affiliation(s)
- Pamela Zengel
- Department of Otorhinolaryngology, Head and Neck Surgery, Grosshadern Medical Centre, Ludwig-Maximilians-University of Munich, Munich, Germany.
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Tanimura S, Hashizume J, Kurosaki Y, Sei K, Gotoh A, Ohtake R, Kawano M, Watanabe K, Kohno M. SH3P2 is a negative regulator of cell motility whose function is inhibited by ribosomal S6 kinase-mediated phosphorylation. Genes Cells 2011; 16:514-26. [DOI: 10.1111/j.1365-2443.2011.01503.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Abstract
We present a microfabricated chamber designed for visualising and quantifying the chemotaxis of slow-migrating adherent mammalian cells such as cancer and endothelial cells. Most of the existing solutions for the investigation of chemotaxis are limited to fast migrating cells such as leukocytes or Dictyostelium discoideum. Here, we describe the details of an assay using the μ-Slide Chemotaxis to investigate the chemotactic response of human umbilical vein endothelial cells to a gradient of human vascular endothelial growth factor 165. In combination with phase contrast video microscopy and cell tracking, the trajectories of all single cells migrating in temporally stable gradients are derived. The resulting migration data are displayed and analysed in detail by several different parameters for quantifying chemotaxis. We found that with this tool the potential of chemoattractants to migration of mammalian cells as well as the impact of inhibitors to chemotaxis and migration can be evaluated.
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Quaranta V, Tyson DR, Garbett SP, Weidow B, Harris MP, Georgescu W. Trait variability of cancer cells quantified by high-content automated microscopy of single cells. Methods Enzymol 2009; 467:23-57. [PMID: 19897088 DOI: 10.1016/s0076-6879(09)67002-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
Mapping quantitative cell traits (QCT) to underlying molecular defects is a central challenge in cancer research because heterogeneity at all biological scales, from genes to cells to populations, is recognized as the main driver of cancer progression and treatment resistance. A major roadblock to a multiscale framework linking cell to signaling to genetic cancer heterogeneity is the dearth of large-scale, single-cell data on QCT-such as proliferation, death sensitivity, motility, metabolism, and other hallmarks of cancer. High-volume single-cell data can be used to represent cell-to-cell genetic and nongenetic QCT variability in cancer cell populations as averages, distributions, and statistical subpopulations. By matching the abundance of available data on cancer genetic and molecular variability, QCT data should enable quantitative mapping of phenotype to genotype in cancer. This challenge is being met by high-content automated microscopy (HCAM), based on the convergence of several technologies including computerized microscopy, image processing, computation, and heterogeneity science. In this chapter, we describe an HCAM workflow that can be set up in a medium size interdisciplinary laboratory, and its application to produce high-throughput QCT data for cancer cell motility and proliferation. This type of data is ideally suited to populate cell-scale computational and mathematical models of cancer progression for quantitatively and predictively evaluating cancer drug discovery and treatment.
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Affiliation(s)
- Vito Quaranta
- Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, Tennessee, USA; Vanderbilt Integrative Cancer Biology Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Darren R Tyson
- Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, Tennessee, USA; Vanderbilt Integrative Cancer Biology Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Shawn P Garbett
- Vanderbilt Integrative Cancer Biology Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Brandy Weidow
- Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, Tennessee, USA; Vanderbilt Integrative Cancer Biology Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Mark P Harris
- Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Walter Georgescu
- Vanderbilt Integrative Cancer Biology Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA; Department of Biomedical Engineering, Vanderbilt University Medical Center, Nashville, Tennessee, USA
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