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Angeli C, Atienza-Sanz S, Schröder S, Hein A, Li Y, Argyrou A, Osipyan A, Terholsen H, Schmidt S. Recent Developments and Challenges in the Enzymatic Formation of Nitrogen-Nitrogen Bonds. ACS Catal 2025; 15:310-342. [PMID: 39781334 PMCID: PMC11705231 DOI: 10.1021/acscatal.4c05268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 12/04/2024] [Accepted: 12/06/2024] [Indexed: 01/12/2025]
Abstract
The biological formation of nitrogen-nitrogen (N-N) bonds represents intriguing reactions that have attracted much attention in the past decade. This interest has led to an increasing number of N-N bond-containing natural products (NPs) and related enzymes that catalyze their formation (referred to in this review as NNzymes) being elucidated and studied in greater detail. While more detailed information on the biosynthesis of N-N bond-containing NPs, which has only become available in recent years, provides an unprecedented source of biosynthetic enzymes, their potential for biocatalytic applications has been minimally explored. With this review, we aim not only to provide a comprehensive overview of both characterized NNzymes and hypothetical biocatalysts with putative N-N bond forming activity, but also to highlight the potential of NNzymes from a biocatalytic perspective. We also present and compare conventional synthetic approaches to linear and cyclic hydrazines, hydrazides, diazo- and nitroso-groups, triazenes, and triazoles to allow comparison with enzymatic routes via NNzymes to these N-N bond-containing functional groups. Moreover, the biosynthetic pathways as well as the diversity and reaction mechanisms of NNzymes are presented according to the direct functional groups currently accessible to these enzymes.
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Affiliation(s)
- Charitomeni Angeli
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Sara Atienza-Sanz
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Simon Schröder
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Annika Hein
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Yongxin Li
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Alexander Argyrou
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Angelina Osipyan
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Henrik Terholsen
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
| | - Sandy Schmidt
- Department
of Chemical and Pharmaceutical Biology, Groningen Research Institute
of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713AV, The Netherlands
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2
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Gaither JB, French R, Knotts M, Lerman M, Harrell AJ, McIntosh S, Rice AD, Cole R, Gilmore S, Hindman DE, Edwards C, Nguyen HN, Truxillo M, West J, Yeoh A, Davis T, Shirazi FM, Wilson BZ, Debevec JT, Schertz M, Walter FG. Consensus Guideline for Care of Patients in the Prehospital and Aerospace Settings with Exposures to Hydrazine and Hydrazine Derivatives. PREHOSP EMERG CARE 2024:1-15. [PMID: 39671518 DOI: 10.1080/10903127.2024.2442097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 12/01/2024] [Accepted: 12/02/2024] [Indexed: 12/15/2024]
Abstract
OBJECTIVES Hydrazine (HZ) and Hydrazine Derivative (HZ-D) exposures pose health risks to people in industrial and aerospace settings. Several recent systematic reviews and case series have highlighted common clinical presentations and management strategies. Given the low frequency at which HZ and HZ-D exposures occur, a strong evidence base on which to develop an evidence-based guideline does not exist at this time. Therefore, the aim of this project is to establish a consensus guideline for prehospital care of patients with exposures to HZ and HZ-Ds. METHODS A modified Delphi technique was used to develop clinical questions, obtain expert panel opinions, develop initial patient care recommendations, and revise the draft into a final consensus guideline. First, individuals (Emergency Medical Services (EMS) physicians and hazardous materials technicians) with experience in management of HZ and HZ-Ds identified relevant clinical questions. An expert panel was then convened to make clinical recommendations. In the first round, the panel voted on clinical care recommendations. These recommendations were drafted into a guideline that expert panel members reviewed. After review, additional unanswered questions were discussed electronically by expert panel members, and electronic votes were cast. Ultimately, patient care recommendations were condensed into a concise, consensus guideline. RESULTS Eight clinical questions regarding treatment of patients with HZ and HZ-D exposures were identified. These questions were reviewed by the expert panel which included 2 representatives from: aerospace medicine, military medicine, EMS medicine, paramedicine, pharmacy, and toxicology. Draft patient care recommendations generated three additional questions which were discussed electronically and voted on. These recommendations were then formatted into a guideline outlining recommendations for care prior to decontamination, during decontamination, and after decontamination. CONCLUSIONS The consensus guideline for clinical care of patients with exposure to HZ/HZ-Ds is as follows: Prior to decontamination, use appropriate personal protective equipment, and when necessary, support ventilation using a bag-valve-mask and administer midazolam intramuscularly for seizures. After decontamination, provide supplemental oxygen; consider selective advanced airway management when indicated; administer inhaled beta-agonists for wheezing; and, for seizures unresponsive to multiple doses of benzodiazepines that occur during pre-planned, high-hazard activities, such as spacecraft recovery, consider intravenous or intraosseous pyridoxine.
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Affiliation(s)
- Joshua B Gaither
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
| | - Robert French
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
| | - Mary Knotts
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
| | - Milton Lerman
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
| | - Andrew J Harrell
- Department of Emergency Medicine, School of Medicine, The University of New Mexico, Albuquerque, NM
| | - Scott McIntosh
- Department of Emergency Medicine, College of Medicine, University of Utah, Salt Lake City, UT
| | - Amber D Rice
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
| | - Richard Cole
- National Aeronautics and Space Administration, Houston, TX
| | - Stevan Gilmore
- National Aeronautics and Space Administration, Houston, TX
| | - Diane E Hindman
- Phoenix Children's Hospital, Phoenix, AZ
- Arizona Poison and Drug Information Center, College of Pharmacy, The University of Arizona, Tucson, AZ
| | - Christopher Edwards
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
- Department of Pharmacy Practice and Science, College of Pharmacy, The University of Arizona, Tucson, AZ
| | - HoanVu Ngoc Nguyen
- Department of Emergency Medicine and Division of Medical Toxicology, UC Davis Health, Sacramento, CA
- 60th Healthcare Operations Squadron, United States Air Force, Travis AFB, CA
| | - Mark Truxillo
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
- United States Air Force, 563rd Rescue Group, Davis-Monthan AFB, AZ
| | - Jason West
- Tucson Fire Department, City of Tucson, Tucson, AZ
| | - Andy Yeoh
- Tucson Fire Department, City of Tucson, Tucson, AZ
| | - Todd Davis
- Tucson Fire Department, City of Tucson, Tucson, AZ
| | - Farshad Mazda Shirazi
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
- Department of Pharmacy Practice and Science, College of Pharmacy, The University of Arizona, Tucson, AZ
- Arizona Poison and Drug Information Center, College of Pharmacy, The University of Arizona, Tucson, AZ
| | - Bryan Z Wilson
- Southeast Texas Poison Center, University of Texas Medical Branch, Galveston, TX
- Arizona Poison and Drug Information Center, College of Pharmacy, The University of Arizona, Tucson, AZ
| | - Jacob T Debevec
- Department of Emergency Medicine, School of Medicine, The University of New Mexico, Albuquerque, NM
| | | | - Frank G Walter
- Department of Emergency Medicine, College of Medicine, The University of Arizona, Tucson, AZ
- Department of Pharmacy Practice and Science, College of Pharmacy, The University of Arizona, Tucson, AZ
- Arizona Poison and Drug Information Center, College of Pharmacy, The University of Arizona, Tucson, AZ
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Huang X, Xie X, Huang S, Wu S, Huang L. Predicting non-chemotherapy drug-induced agranulocytosis toxicity through ensemble machine learning approaches. Front Pharmacol 2024; 15:1431941. [PMID: 39206259 PMCID: PMC11349714 DOI: 10.3389/fphar.2024.1431941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 08/02/2024] [Indexed: 09/04/2024] Open
Abstract
Agranulocytosis, induced by non-chemotherapy drugs, is a serious medical condition that presents a formidable challenge in predictive toxicology due to its idiosyncratic nature and complex mechanisms. In this study, we assembled a dataset of 759 compounds and applied a rigorous feature selection process prior to employing ensemble machine learning classifiers to forecast non-chemotherapy drug-induced agranulocytosis (NCDIA) toxicity. The balanced bagging classifier combined with a gradient boosting decision tree (BBC + GBDT), utilizing the combined descriptor set of DS and RDKit comprising 237 features, emerged as the top-performing model, with an external validation AUC of 0.9164, ACC of 83.55%, and MCC of 0.6095. The model's predictive reliability was further substantiated by an applicability domain analysis. Feature importance, assessed through permutation importance within the BBC + GBDT model, highlighted key molecular properties that significantly influence NCDIA toxicity. Additionally, 16 structural alerts identified by SARpy software further revealed potential molecular signatures associated with toxicity, enriching our understanding of the underlying mechanisms. We also applied the constructed models to assess the NCDIA toxicity of novel drugs approved by FDA. This study advances predictive toxicology by providing a framework to assess and mitigate agranulocytosis risks, ensuring the safety of pharmaceutical development and facilitating post-market surveillance of new drugs.
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Affiliation(s)
- Xiaojie Huang
- Department of Clinical Pharmacy, Jieyang People’s Hospital, Jieyang, China
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Yang YS, Wang FN, Zhang YP, Liang YN, Xue JJ. Bis-chalcone Fluorescent Probe for Hydrazine Ratio Sensing in Environment and Organism. Appl Biochem Biotechnol 2024; 196:5064-5079. [PMID: 38012369 DOI: 10.1007/s12010-023-04785-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/07/2023] [Indexed: 11/29/2023]
Abstract
In this paper, four novel hydrazine fluorescent probes X1-X4 with bis-chalcone structure were designed and synthesized. Through the measurement of its optical properties, it is found that it can quickly identify hydrazine, high sensitivity, low detection limit, and good anti-interference ability. The recognition of hydrazine by probes X1-X4 is not affected in the pH range of 4-10, X2 has the highest sensitivity, and the detection limit is as low as 0.336 × 10-7 M. Through Gaussian quantization calculation of probe molecules and their reaction products with hydrazine, it is speculated that the recognition mechanism is the closure of intramolecular charge transfer effect. In addition, the cytotoxicity and imaging of HeLa cells were tested, which showed that probes X1-X4 could be used to detect hydrazine in cells.
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Affiliation(s)
- Yun-Shang Yang
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, 730050, China.
| | - Fu-Nian Wang
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, 730050, China
| | - Ying-Peng Zhang
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, 730050, China.
| | - Yu-Ning Liang
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, 730050, China
| | - Ji-Jun Xue
- State Key Laboratory of Applied Organic Chemistry & College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China
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Nguyen HN, McElyea CWE, Chenoweth JA, Nowadly CD, Varney SM, Wilson BZ, Hoyte CO. Acute exposure to hydrazine reported to four United States regional poison centers: reconsidering a paradigm. Clin Toxicol (Phila) 2024; 62:322-328. [PMID: 38813683 DOI: 10.1080/15563650.2024.2350601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 04/28/2024] [Indexed: 05/31/2024]
Abstract
INTRODUCTION Exposures to hydrazines occur during aeronautic and space operations and pose a potential risk to personnel. Historically, extensive preparatory countermeasures have been taken due to concern for severe toxicity. This study seeks to better understand manifestations of acute occupational exposures to hydrazine to guide recommendations for management. MATERIALS AND METHODS A retrospective database review of records from four United States regional poison centers was conducted of all human exposures to hydrazine, monomethylhydrazine, or 1,1-dimethylhydrazine over two decades. Following case abstraction, descriptive statistics were performed to characterize demographics, manifestations, treatments, and outcomes. RESULTS One hundred and thirty-five cases were identified, and most were adult males exposed to inhaled hydrazine propellant vapors. Fifty-seven percent of patients were asymptomatic following exposure; otherwise, common symptoms were dyspnea, throat irritation, cough, ocular irritation, and headache. All patients were evacuated or received decontamination, with a few reports of symptomatic treatments, including oxygen supplementation and salbutamol (albuterol). Patients usually recovered quickly and were released after a brief healthcare facility evaluation or observed locally. No patients developed delayed symptoms. Symptoms of severe toxicity were not observed, and there were no deaths. DISCUSSION Acute exposures to hydrazines during operations within the aerospace industry appear to be limited primarily to mucosal and mild pulmonary irritation without significant neurologic, hepatic, or hematologic toxicity. These findings are contrary to previously established expectations and may be related to low-level exposures or possibly due to current emergency countermeasures. CONCLUSIONS Care in occupational hydrazine exposure will focus on evacuation, decontamination, and symptomatic management of chemical irritant properties of hydrazines. It is reasonable to manage mild cases outside of a healthcare facility. Continued endeavors in human space exploration and habitation will increase the risk of these exposures, making it imperative that clinicians be comfortable with the care and management of these patients.
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Affiliation(s)
- HoanVu N Nguyen
- 60th Healthcare Operations Squadron, Travis AFB, Sacramento, CA, USA
- Department of Emergency Medicine and Division of Medical Toxicology, UC Davis Health, Sacramento, CA, USA
| | - Charles W E McElyea
- Department of Emergency Medicine and Division of Medical Toxicology, UC Davis Health, Sacramento, CA, USA
| | - James A Chenoweth
- Department of Emergency Medicine and Division of Medical Toxicology, UC Davis Health, Sacramento, CA, USA
| | - Craig D Nowadly
- Clinical and Operational Space Medicine Innovation Consortium (COSMIC), 59th Medical Wing/Science and Technology, Lackland Air Force Base, San Antonio, TX, USA
| | | | - Bryan Z Wilson
- Arizona Poison and Drug Information Center, Tucson, AZ, USA
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Li Y. DNA Adducts in Cancer Chemotherapy. J Med Chem 2024; 67:5113-5143. [PMID: 38552031 DOI: 10.1021/acs.jmedchem.3c02476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2024]
Abstract
DNA adducting drugs, including alkylating agents and platinum-containing drugs, are prominent in cancer chemotherapy. Their mechanisms of action involve direct interaction with DNA, resulting in the formation of DNA addition products known as DNA adducts. While these adducts are well-accepted to induce cancer cell death, understanding of their specific chemotypes and their role in drug therapy response remain limited. This perspective aims to address this gap by investigating the metabolic activation and chemical characterization of DNA adducts formed by the U.S. FDA-approved drugs. Moreover, clinical studies on DNA adducts as potential biomarkers for predicting patient responses to drug efficacy are examined. The overarching goal is to engage the interest of medicinal chemists and stimulate further research into the use of DNA adducts as biomarkers for guiding personalized cancer treatment.
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Li B, Wang X, Huang D, Li M, Qin A, Qin Y, Tang BZ. Acid-base responsive multifunctional poly(formyl sulfide)s through a facile catalyst-free click polymerization of aldehyde-activated internal diynes and dithiols. Chem Sci 2023; 14:10718-10726. [PMID: 37829011 PMCID: PMC10566499 DOI: 10.1039/d3sc03732k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 09/04/2023] [Indexed: 10/14/2023] Open
Abstract
Acid-base equilibria play a critical role in biological processes and environmental systems. The development of innovative fluorescent polymeric materials to monitor acid-base equilibria is highly desirable. Herein, a novel catalyst-free click polymerization of aldehyde-activated internal diynes and dithiols was established, and exclusively Markovnikov poly(formyl sulfide)s (PFSs) with high molecular weights and moderate stereoregularity were produced in high yields. Because of the aromatic units and sulfur atoms in their main chains, these polymers possessed high refractive index values. By introducing the fluorene and aldehyde moieties, the resulting PFSs could act as a fluorescent sensor for sensitive hydrazine detection. Taking advantage of the reaction of the aldehyde group and hydrazine, imino-PFSs with remarkable and reversible fluorescence change through alternating fumigation with HCl and NH3 were easily acquired and further applied in multicolor patterning, a rewritable material and quadruple-mode information encryption. Additionally, a test strip of protonated imino-polymer for the tracking of bioamines in situ generated from marine product spoilage was also demonstrated. Collectively, this work not only provides a powerful click polymerization to enrich the multiplicity of sulfur-containing materials, but also opens up enormous opportunities for these functional polysulfides in diverse applications.
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Affiliation(s)
- Baixue Li
- College of Chemistry and Chemical Engineering, Yantai University Yantai 264005 China
| | - Xue Wang
- College of Chemistry and Chemical Engineering, Yantai University Yantai 264005 China
| | - Die Huang
- State Key Laboratory of Luminescent Materials and Devices, Guangdong Provincial Key Laboratory of Luminescence from Molecular Aggregates, Center for Aggregation-Induced Emission, South China University of Technology Guangzhou 510640 China
| | - Mingzhao Li
- State Key Laboratory of Luminescent Materials and Devices, Guangdong Provincial Key Laboratory of Luminescence from Molecular Aggregates, Center for Aggregation-Induced Emission, South China University of Technology Guangzhou 510640 China
| | - Anjun Qin
- State Key Laboratory of Luminescent Materials and Devices, Guangdong Provincial Key Laboratory of Luminescence from Molecular Aggregates, Center for Aggregation-Induced Emission, South China University of Technology Guangzhou 510640 China
| | - Yusheng Qin
- College of Chemistry and Chemical Engineering, Yantai University Yantai 264005 China
| | - Ben Zhong Tang
- School of Science and Engineering, Shenzhen Institute of Aggregate Science and Technology, The Chinese University of Hong Kong, Shenzhen (CUHK-Shenzhen) Shenzhen 518172 China
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Motlová L, Šnajdr I, Kutil Z, Andris E, Ptáček J, Novotná A, Nováková Z, Havlínová B, Tueckmantel W, Dráberová H, Majer P, Schutkowski M, Kozikowski A, Rulíšek L, Bařinka C. Comprehensive Mechanistic View of the Hydrolysis of Oxadiazole-Based Inhibitors by Histone Deacetylase 6 (HDAC6). ACS Chem Biol 2023. [PMID: 37392419 PMCID: PMC10367051 DOI: 10.1021/acschembio.3c00212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/03/2023]
Abstract
Histone deacetylase (HDAC) inhibitors used in the clinic typically contain a hydroxamate zinc-binding group (ZBG). However, more recent work has shown that the use of alternative ZBGs, and, in particular, the heterocyclic oxadiazoles, can confer higher isoenzyme selectivity and more favorable ADMET profiles. Herein, we report on the synthesis and biochemical, crystallographic, and computational characterization of a series of oxadiazole-based inhibitors selectively targeting the HDAC6 isoform. Surprisingly, but in line with a very recent finding reported in the literature, a crystal structure of the HDAC6/inhibitor complex revealed that hydrolysis of the oxadiazole ring transforms the parent oxadiazole into an acylhydrazide through a sequence of two hydrolytic steps. An identical cleavage pattern was also observed both in vitro using the purified HDAC6 enzyme as well as in cellular systems. By employing advanced quantum and molecular mechanics (QM/MM) and QM calculations, we elucidated the mechanistic details of the two hydrolytic steps to obtain a comprehensive mechanistic view of the double hydrolysis of the oxadiazole ring. This was achieved by fully characterizing the reaction coordinate, including identification of the structures of all intermediates and transition states, together with calculations of their respective activation (free) energies. In addition, we ruled out several (intuitively) competing pathways. The computed data (ΔG‡ ≈ 21 kcal·mol-1 for the rate-determining step of the overall dual hydrolysis) are in very good agreement with the experimentally determined rate constants, which a posteriori supports the proposed reaction mechanism. We also clearly (and quantitatively) explain the role of the -CF3 or -CHF2 substituent on the oxadiazole ring, which is a prerequisite for hydrolysis to occur. Overall, our data provide compelling evidence that the oxadiazole warheads can be efficiently transformed within the active sites of target metallohydrolases to afford reaction products possessing distinct selectivity and inhibition profiles.
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Affiliation(s)
- Lucia Motlová
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic
| | - Ivan Šnajdr
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10 Prague 6, Czech Republic
| | - Zsófia Kutil
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic
| | - Erik Andris
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10 Prague 6, Czech Republic
| | - Jakub Ptáček
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic
| | - Adéla Novotná
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10 Prague 6, Czech Republic
| | - Zora Nováková
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic
| | - Barbora Havlínová
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic
| | - Werner Tueckmantel
- StarWise Therapeutics LLC, University Research Park, Inc., Madison, Wisconsin 53719, United States
| | - Helena Dráberová
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic
| | - Pavel Majer
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10 Prague 6, Czech Republic
| | - Mike Schutkowski
- Department of Enzymology, Charles Tanford Protein Center, Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany
| | - Alan Kozikowski
- StarWise Therapeutics LLC, University Research Park, Inc., Madison, Wisconsin 53719, United States
| | - Lubomír Rulíšek
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10 Prague 6, Czech Republic
| | - Cyril Bařinka
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic
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9
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Banna MHA, Howlader MBH, Miyatake R, Sheikh MC, Ansary MRH, Zangrando E. Crystal structures of 4-[(4-methyl-benz-yl)-oxy]benzohydrazide and its N'-[(thio-phen-2-yl)-methyl-idene]- derivative. Acta Crystallogr E Crystallogr Commun 2023; 79:207-211. [PMID: 36909983 PMCID: PMC9993917 DOI: 10.1107/s2056989023001354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 02/14/2023] [Indexed: 02/23/2023]
Abstract
The mol-ecular and crystal structures of a benzoyl-hydrazine bearing an ether group, 4-[(4-methyl-benz-yl)-oxy]benzohydrazide, C15H16N2O2, (I), and of the corresponding N'-[(thio-phen-2-yl)-methyl-idene]- derivative, 4-[(4-methyl-benz-yl)-oxy]-N'-[(thio-phen-2-yl)-methyl-idene]benzohydrazide, C20H18N2O2S, (II), are described. The supra-molecular structures of both compounds are governed by N-H⋯N and N-H⋯O hydrogen-bonding inter-actions. The hydrazine compound (I) shows a crystal packing with a more complex hydrogen-bonding scheme because of the NH-NH2 entity, forming a di-periodic supra-molecular structure extending parallel to (100). Hydrazone mol-ecules in (II) are hydrogen-bonded through N-H⋯O inter-actions, giving rise to the formation of ribbons parallel to [010]. Mol-ecules of (I) and (II) show a different orientation of the carbohydrazide moiety likely to favor the crystal packing and thus hydrogen-bonding inter-actions.
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Affiliation(s)
| | | | - Ryuta Miyatake
- Center for Environmental Conservation and Research Safety, University of Toyama, 3190 Gofuku, Toyama, 930-8555, Japan
| | - Md. Chanmiya Sheikh
- Department of Applied Science, Faculty of Science, Okayama University of Science,Japan
| | | | - Ennio Zangrando
- Department of Chemical and Pharmaceutical Sciences, University of Trieste, Italy
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Olla C, Porcu S, Secci F, Ricci PC, Carbonaro CM. Towards N-N-Doped Carbon Dots: A Combined Computational and Experimental Investigation. MATERIALS (BASEL, SWITZERLAND) 2022; 15:1468. [PMID: 35208012 PMCID: PMC8880414 DOI: 10.3390/ma15041468] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 01/27/2022] [Accepted: 02/09/2022] [Indexed: 02/04/2023]
Abstract
The introduction of N doping atoms in the carbon network of Carbon Dots is known to increase their quantum yield and broaden the emission spectrum, depending on the kind of N bonding introduced. N doping is usually achieved by exploiting amine molecules in the synthesis. In this work, we studied the possibility of introducing a N-N bonding in the carbon network by means of hydrothermal synthesis of citric acid and hydrazine molecules, including hydrated hydrazine, di-methylhydrazine and phenylhydrazine. The experimental optical features show the typical fingerprints of Carbon Dots formation, such as nanometric size, excitation dependent emission, non-single exponential decay of photoluminescence and G and D vibrational bands in the Raman spectra. To explain the reported data, we performed a detailed computational investigation of the possible products of the synthesis, comparing the simulated absorbance spectra with the experimental optical excitation pattern. The computed Raman spectra corroborate the hypothesis of the formation of pyridinone derivatives, among which the formation of small polymeric chains allowed the broad excitation spectra to be experimentally observed.
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Affiliation(s)
- Chiara Olla
- Department of Physics, University of Cagliari, Cittadella Universitaria, I-09042 Monserrato, Italy; (S.P.); (P.C.R.)
| | - Stefania Porcu
- Department of Physics, University of Cagliari, Cittadella Universitaria, I-09042 Monserrato, Italy; (S.P.); (P.C.R.)
| | - Francesco Secci
- Department of Chemistry and Geological Science, University of Cagliari, Cittadella Universitaria, I-09042 Monserrato, Italy;
| | - Pier Carlo Ricci
- Department of Physics, University of Cagliari, Cittadella Universitaria, I-09042 Monserrato, Italy; (S.P.); (P.C.R.)
| | - Carlo Maria Carbonaro
- Department of Physics, University of Cagliari, Cittadella Universitaria, I-09042 Monserrato, Italy; (S.P.); (P.C.R.)
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11
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Li J, Hu Y, Li Z, Liu W, Deng T, Li J. Photoactivatable Red Chemiluminescent AIEgen Probe for In Vitro/ Vivo Imaging Assay of Hydrazine. Anal Chem 2021; 93:10601-10610. [PMID: 34296856 DOI: 10.1021/acs.analchem.1c01804] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Here, we have developed a novel photoactivatable red chemiluminescent AIEgen probe (ACL), based on the combination of the red-emission AIEgen fluorophore (TPEDC) that shows excellent singlet oxygen (1O2)-generation ability and the precursor of Schaap's dioxetane (the linker connected to adamantane is the C═C bond) that can be modified to target various analytes, for in vitro and in vivo measurement of hydrazine. Prior to applying for sensing detection, the C═C bond connected to adamantane in ACL was first converted into dioxetane by irradiation to form the activated chemiluminescent AIEgen probe (ACLD). Then, the self-immolative reaction was triggered upon the deprotection of the acylated phenolic hydroxyl group in ACLD in the presence of hydrazine, resulting in the release of the high energy held in the 1,2-dioxetanes, and then, the chemiexcitation was triggered, thereby producing red chemiluminescence through the intramolecular chemiluminescence resonance energy transfer from Schaap's dioxetane to TPEDC. This chemiluminescent AIEgen probe was evaluated in a clean buffer environment as well as using living cells and mouse models.
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Affiliation(s)
- Jun Li
- State Key Laboratory of Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Yingcai Hu
- State Key Laboratory of Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Zuhao Li
- State Key Laboratory of Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Wei Liu
- State Key Laboratory of Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Ting Deng
- Institute of Applied Chemistry, School of Science, Central South University of Forestry and Technology, Changsha 410004, P. R. China
| | - Jishan Li
- State Key Laboratory of Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
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12
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Remesar X, Alemany M. Dietary Energy Partition: The Central Role of Glucose. Int J Mol Sci 2020; 21:E7729. [PMID: 33086579 PMCID: PMC7593952 DOI: 10.3390/ijms21207729] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 10/15/2020] [Accepted: 10/15/2020] [Indexed: 12/17/2022] Open
Abstract
Humans have developed effective survival mechanisms under conditions of nutrient (and energy) scarcity. Nevertheless, today, most humans face a quite different situation: excess of nutrients, especially those high in amino-nitrogen and energy (largely fat). The lack of mechanisms to prevent energy overload and the effective persistence of the mechanisms hoarding key nutrients such as amino acids has resulted in deep disorders of substrate handling. There is too often a massive untreatable accumulation of body fat in the presence of severe metabolic disorders of energy utilization and disposal, which become chronic and go much beyond the most obvious problems: diabetes, circulatory, renal and nervous disorders included loosely within the metabolic syndrome. We lack basic knowledge on diet nutrient dynamics at the tissue-cell metabolism level, and this adds to widely used medical procedures lacking sufficient scientific support, with limited or nil success. In the present longitudinal analysis of the fate of dietary nutrients, we have focused on glucose as an example of a largely unknown entity. Even most studies on hyper-energetic diets or their later consequences tend to ignore the critical role of carbohydrate (and nitrogen disposal) as (probably) the two main factors affecting the substrate partition and metabolism.
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Affiliation(s)
- Xavier Remesar
- Department of Biochemistry and Molecular Biomedicine Faculty of Biology, University Barcelona, 08028 Barcelona, Spain;
- IBUB Institute of Biomedicine, University of Barcelona, 08028 Barcelona, Spain
- CIBER Obesity and Nutrition, Institute of Health Carlos III, 08028 Barcelona, Spain
| | - Marià Alemany
- Department of Biochemistry and Molecular Biomedicine Faculty of Biology, University Barcelona, 08028 Barcelona, Spain;
- IBUB Institute of Biomedicine, University of Barcelona, 08028 Barcelona, Spain
- CIBER Obesity and Nutrition, Institute of Health Carlos III, 08028 Barcelona, Spain
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13
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Zhang XY, Yang YS, Wang W, Jiao QC, Zhu HL. Fluorescent sensors for the detection of hydrazine in environmental and biological systems: Recent advances and future prospects. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2020.213367] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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14
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Sinha BK. Role of Oxygen and Nitrogen Radicals in the Mechanism of Anticancer Drug Cytotoxicity. JOURNAL OF CANCER SCIENCE & THERAPY 2020; 12:10-18. [PMID: 32494339 PMCID: PMC7269165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Because of the emergence of drug-resistant tumor cells, successful treatments of human malignancies have been difficult to achieve in the clinic. In spite of various approaches to overcome multi drug resistance, it has remained challenging and elusive. It is, therefore, necessary to define and understand the mechanisms of drug-induced tumor cell killing for the future development of anticancer agents and for rationally designed combination chemotherapies. The clinically active antitumor drugs, topotecan, doxorubicin, etoposide, and procarbazine are currently used for the treatment of human tumors. Therefore, a great deal research has been carried to understand mechanisms of actions of these agents both in the laboratory and in the clinic. These drugs are also extensively metabolized in tumor cells to various reactive species and generate oxygen free radical species (ROS) that initiate lipid peroxidation and induce DNA damage. However, the roles of ROS in the mechanism of cytotoxicity remain unappreciated in the clinic. In addition to ROS, various reactive nitrogen species (RNS) are also formed in tumor cells and in vivo. However, the importance of RNS in cancer treatment is not clear and has remained poorly defined. This review discusses the current understanding of the formation and the significance of ROS and RNS in the mechanisms of various clinically active anticancer drugs.
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Affiliation(s)
- Birandra Kumar Sinha
- Laboratory of Toxicology and Toxicokinetics, National Cancer Institute at National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina, USA
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15
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Soubhye J, Chikh Alard I, Aldib I, Prévost M, Gelbcke M, De Carvalho A, Furtmüller PG, Obinger C, Flemmig J, Tadrent S, Meyer F, Rousseau A, Nève J, Mathieu V, Zouaoui Boudjeltia K, Dufrasne F, Van Antwerpen P. Discovery of Novel Potent Reversible and Irreversible Myeloperoxidase Inhibitors Using Virtual Screening Procedure. J Med Chem 2017; 60:6563-6586. [DOI: 10.1021/acs.jmedchem.7b00285] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Jalal Soubhye
- Laboratoire
de Chimie Pharmaceutique Organique, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Ibaa Chikh Alard
- Laboratoire
de Pharmacie Galénique et Biopharmacie, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Iyas Aldib
- Laboratoire
de Chimie Pharmaceutique Organique, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Martine Prévost
- Laboratoire
de Structure et Fonction des Membranes Biologiques, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du Triomphe, 1050 Bruxelles, Belgium
| | - Michel Gelbcke
- Laboratoire
de Chimie Pharmaceutique Organique, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Annelise De Carvalho
- Laboratoire
de Cancérologie et Toxicologie Expérimentale, Faculté
de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du Triomphe, 1050 Bruxelles, Belgium
| | - Paul G. Furtmüller
- Department
of Chemistry, BOKU—University of Natural Resources and Life Sciences, 1190 Vienna, Austria
| | - Christian Obinger
- Department
of Chemistry, BOKU—University of Natural Resources and Life Sciences, 1190 Vienna, Austria
| | - Jörg Flemmig
- Institute
for Medical Physics and Biophysics, Medical Faculty, University of Leipzig, Haertelstrasse 16−18, 04107 Leipzig, Germany
| | - Sara Tadrent
- Laboratoire
de Chimie Pharmaceutique Organique, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Franck Meyer
- Laboratory
of Biopolymers and Supramolecular Nanomaterials, Faculty of Pharmacy, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Alexandre Rousseau
- Laboratory
of Experimentral Medicine, CHU Charleroi, A. Vsale Hospital, and Université Libre de Bruxelles, 6110 Montigny-le-Tilleul, Belgium
| | - Jean Nève
- Laboratoire
de Chimie Pharmaceutique Organique, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Véronique Mathieu
- Laboratoire
de Cancérologie et Toxicologie Expérimentale, Faculté
de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du Triomphe, 1050 Bruxelles, Belgium
| | - Karim Zouaoui Boudjeltia
- Laboratory
of Experimentral Medicine, CHU Charleroi, A. Vsale Hospital, and Université Libre de Bruxelles, 6110 Montigny-le-Tilleul, Belgium
| | - François Dufrasne
- Laboratoire
de Chimie Pharmaceutique Organique, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
| | - Pierre Van Antwerpen
- Laboratoire
de Chimie Pharmaceutique Organique, Faculté de Pharmacie, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du
Triomphe, 1050 Bruxelles, Belgium
- Analytical
Platform of the Faculty of Pharmacy, Université Libre de Bruxelles, Campus de la Plaine, Boulevard du Triomphe, 1050 Bruxelles, Belgium
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16
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Komkov AV, Komendantova AS, Menchikov LG, Chernoburova EI, Volkova YA, Zavarzin IV. A Straightforward Approach toward Multifunctionalized Pyridazines via Imination/Electrocyclization. Org Lett 2015; 17:3734-7. [PMID: 26158207 DOI: 10.1021/acs.orglett.5b01718] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
A facile synthesis of functionalized 3-carbamide pyridazines starting from readily available chlorovinyl aldehydes and oxamic acid thiohydrazides via cascade imination/electrocyclization is reported. In the presence of p-toluenesulfuric acid, various ketones have been efficiently incorporated into the pyridazine derivatives through a two-step sequence involving a Vilsmeier-Haack reaction and imination. The synthetic value of this method has been demonstrated by efficient synthesis of steroidal pyridazines.
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Affiliation(s)
- Alexander V Komkov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russia
| | - Anna S Komendantova
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russia
| | - Leonid G Menchikov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russia
| | - Elena I Chernoburova
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russia
| | - Yulia A Volkova
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russia
| | - Igor V Zavarzin
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russia
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