Identification and Classification of Rhizobia by Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight Mass Spectrometry

Characterization of symbiotic and nitrogen fixing bacteria

Symbiotic nitrogen fixing bacteria comprise of diverse species associated with the root nodules of leguminous plants. Using an appropriate taxonomic method to confirm the identity of superior and elite strains to fix nitrogen in legume crops can improve sustainable global food and nutrition security. The current review describes taxonomic methods preferred and commonly used to characterize symbiotic bacteria in the rhizosphere. Peer reviewed, published and unpublished articles on techniques used for detection, classification and identification of symbiotic bacteria were evaluated by exploring their advantages and limitations. The findings showed that phenotypic and cultural techniques are still affordable and remain the primary basis of species classification despite their challenges. Development of new, robust and informative taxonomic techniques has really improved characterization and identification of symbiotic bacteria and discovery of novel and new species that are effective in biological nitrogen fixation (BNF) in diverse conditions and environments.

Symbiotic Performances of Three Mesorhizobium huakuii Strains Inoculated to Chinese Milk Vetch Varieties

In this experiment, 4 varieties of Chinese milk vetch (Xinyang, Minzi No. 6, Minzi 8487711, and Shishou) were used as host plants and inoculated with 3 strains of rhizobium (CCBAU 2609, M. h 93, and 7653R). The differences in their morphology, yield, and nodule characteristics at different growth stages were studied and the reasons for these differences were analyzed to explore the exclusivity between different varieties of Chinese milk vetch and strains of rhizobium. Results showed no significant difference in plant height and whole-plant dry weight at seedling stage under different treatments but significant differences in these characteristics at full flowering stage. The results indicated that Minzi 8487711 and Shishou were significantly better than the other varieties. During the whole growth period, the growth indexes and nodule characteristics of the 4 varieties inoculated with strain 7653R were better than those of the varieties inoculated with other strains. At full flowering stage, compared with that of the control group, the biomasses of Xinyang, Minzi No.6, Minzi 8487711, and Shishou had increased by 2.04, 2.84, 1.56, and 2.69-fold, respectively, and nitrogenase activities increased by 3.82, 9.60, 6.21, and 15.18%, respectively. Significant differences in the exclusivity between varieties and strains were observed. Minzi No.6-7653R and Shishou variety-7653R had the strongest exclusivity. The results showed that 7653R was a broad-spectrum and high-efficiency rhizobium strain. 7653R is recommended to be used in combination with Chinese milk vetch varieties, such as Minzi 8487711 and Shishou, to obtain advantages in yield and nitrogen fixation in production.

Two Major Clades of Bradyrhizobia Dominate Symbiotic Interactions with Pigeonpea in Fields of Côte d'Ivoire

In smallholder farms of Côte d'Ivoire, particularly in the northeast of the country, Cajanus cajan (pigeonpea) has become an important crop because of its multiple beneficial facets. Pigeonpea seeds provide food to make ends meet, are sold on local markets, and aerial parts serve as forage for animals. Since it fixes atmospheric nitrogen in symbiosis with soil bacteria collectively known as rhizobia, C. cajan also improves soil fertility and reduces fallow time. Yet, seed yields remain low mostly because farmers cannot afford chemical fertilizers. To identify local rhizobial strains susceptible to be used as bio-inoculants to foster pigeonpea growth, root nodules were collected in six fields of three geographically distant regions of Côte d'Ivoire. Nodule bacteria were isolated and characterized using various molecular techniques including matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry (MS) and DNA sequencing. These molecular analyses showed that 63 out of 85 nodule isolates belonged to two major clades of bradyrhizobia, one of which is known as the Bradyrhizobium elkanii super clade. Phylogenies of housekeeping (16S-ITS-23S, rpoB) and symbiotic (nifH) genes were not always congruent suggesting that lateral transfer of nitrogen fixation genes also contributed to define the genome of these bradyrhizobial isolates. Interestingly, no field-, plant-, or cultivar-specific effect was found to shape the profiles of symbiotic strains. In addition, nodule isolates CI-1B, CI-36E, and CI-41A that belong to distinct species, showed similar symbiotic efficiencies suggesting that any of these strains might serve as a proficient inoculant for C. cajan.