Habitat Partitioning and its Possible Genetic Background Between Two Sympatrically Distributed Eel Species in Taiwan

Parallel and convergent evolution in genes underlying seasonal migration

Seasonal migration has fascinated scientists and natural historians for centuries. While the genetic basis of migration has been widely studied across different taxa, there is little consensus regarding which genomic regions play a role in the ability to migrate and whether they are similar across species. Here, we examine the genetic basis of intraspecific variation within and between distinct migratory phenotypes in a songbird. We focus on the Common Yellowthroat (Geothlypis trichas) as a model system because the polyphyletic origin of eastern and western clades across North America provides a strong framework for understanding the extent to which there has been parallel or convergent evolution in the genes associated with migratory behavior. First, we investigate genome-wide population genetic structure in the Common Yellowthroat in 196 individuals collected from 22 locations across breeding range. Then, to identify candidate genes involved in seasonal migration, we identify signals of putative selection in replicate comparisons between resident and migratory phenotypes within and between eastern and western clades. Overall, we find wide-spread support for parallel evolution at the genic level, particularly in genes that mediate biological timekeeping. However, we find little evidence of parallelism at the individual SNP level, supporting the idea that there are multiple genetic pathways involved in the modulation of migration.

Species diversity of freshwater glass eel (Anguilliformes, Anguillidae) of Yilan, Taiwan, with remark on two new records

Yilan, Taiwan is the first place in East Asia where freshwater glass eels, the juvenile stage of Anguilla species, arrive by ocean currents. We collected glass eels by fyke net in Lanyang River estuary twice a month from July 2010 to November 2023. By morphological examination and sequencing of the mitochondrial cytochrome b gene, we identified seven species of Anguilla. Most of the glass eels captured in Yilan belonged to the species A.japonica, A.marmorata, and A.bicolorpacifica. Only a few were A.luzonensis, and two A.celebesensis were recorded. In addition, two species were recorded for the time time from Taiwan; A.interioris and A.borneensis were confirmed by cytochrome b sequencing. Thus, we increase the number of Anguilla species in Taiwan from five to seven.

Influence of environmental parameters on habitat use by sympatric freshwater eels Anguilla marmorata and Anguilla japonica on Yakushima Island, Japan

It is known that environmental parameters, such as water depth, size of substrate material, and current velocity, influence the organization of stream fish communities. However, few studies have investigated the effects of these parameters on the sympatric freshwater eels. Here, the habitat use of two anguillid eels, the Indo-Pacific eel (Anguilla marmorata Quoy and Gaimard, 1824) and the Japanese eel (Anguilla japonica Temminck and Schlegel, 1846), coexisting in the same river systems in Japan, was investigated. It was found that the tropical species A. marmorata exclusively used habitats with larger substrate materials, fewer fallen leaves and less leaf detritus, higher current velocity, and lower turbidity than the temperate species A. japonica, and the distributions of the two anguillid eels were clearly segregated. Thus, when both species co-occur in the same river systems, clear flowing mainstems and tributaries are preferred habitats for A. marmorata, whereas stagnant muddy estuaries, backwater areas, irrigation channels, and reservoirs are preferred habitats for A. japonica. These habitat segregations were consistent as body size increased and life-stage developments from elver to yellow eel and did not show ontogenetic shifts. The findings indicated that both species had strong habitat preferences, and these environmental parameters must be considered in the conservation of anguillid eels in sympatric zones.

Habitat preference, movements and growth of giant mottled eels, Anguilla marmorata, in a small subtropical Amami-Oshima Island river

Although anguillid eel populations have decreased remarkably in recent decades, few detailed ecological studies have been conducted on tropical eels such as the giant mottled eel whose range extends across the whole Indo-Pacific. This species was studied throughout the entire 0.5 km mainstem reaches of Oganeku River on the subtropical Amami-Oshima Island of Japan over a two-year period using four sampling periods to understand its habitat preference, early life-stage dispersal process, movements, and annual growth using a mark-recapture experiment conducted with quantitative electrofishing. A total of 396 juvenile growth-phase A. marmorata eels were caught and tagged, with 48 individuals being recaptured at least once. Their density irrespective of size of eels was most strongly determined by distance from the river mouth, followed by riverbank type according to random forest models. Eel density decreased with increasing distance from the freshwater tidal limit located about 100-150 m from the river mouth. Eels preferred vegetated riverbanks, while they avoided those of concrete and sand. The density of small eels (total length: TL < 240 mm) was also associated with depth and velocity, with small eels tending to prefer riffle or run habitats. In contrast, large eels (TL ≥ 240 mm) were found in habitats of any depth and velocity. The TL of eels had a minimum peak at around the tidal limit, and it increased with increasing distance from the tidal limit. The observed density and size gradients of eels in relation to the distance from the river mouth suggested that A. marmorata initially recruited to freshwater tidal limit areas and then dispersed in both downstream and upstream directions. The growth rate of eels varied greatly among individuals that were at large for various periods of time and ranged from 0 to 163.2 mm/year (mean ± SD of 31.8 ± 31.0 mm/year). Of the recaptured eels, 52.1% were recaptured in a section that was different from the original capture section, and their mean ± SD distance travelled was 46.5 ± 72.5 m (median = 20 m). 47.9% of the eels were recaptured from the original section of capture (i.e., <10 m distances travelled), suggesting that they had strong fidelity to specific habitats with limited movements. The distance travelled of eels that had moved was greater for small eels (range = 10-380 m; mean ± SD = 84.4 ± 121.9 m) than large individuals (range = 10-120 m; mean ± SD = 30.9 ± 31.0 m), which indicates that the mobility of the eels declines as they grow. This is the first clear detailed documentation of the spatial distribution, growth, and movements of tropical eels in a small river system in relation to environmental conditions that provides an example of how future studies can be conducted in other areas to understand how conservation efforts can be most efficiently targeted for maximum success.

Ecology and evolution of migration in the freshwater eels of the genus Anguilla Schrank, 1798

Scientists have long sought to uncover the secrets of the migration of anguillid eels, genus Anguilla. As catadromous fishes, anguillid eels spend most of their lives in freshwater until they return to their spawning grounds in the tropics, although part of the population never enters freshwater and instead resides in brackish and marine areas close to coastlines. Molecular phylogenetic research suggests that anguillid eels originated from deep-ocean midwater marine anguilliform species and that tropical eels originating from the Indo-Pacific region are the most basal species of anguillid eels. Anguillid eels left the tropical ocean to colonize temperate areas. The yearly spawning of tropical species and constant larval growth throughout the year extend to periods of recruitment in continental habitats to last all year for tropical eels. Tropical eels such as A. celebesensis and A. borneensis have relatively short migrations periods of less than 100 km to their spawning grounds. Conversely, the temperate European eel A. anguilla travels the longest distances and migrates more than 5000 km across the Atlantic Ocean to spawn in the Sargasso Sea. The ancestral state of migration in the genus Anguilla may have been local, short-scale and nonseasonal spawning migration throughout the year as defined in tropical eels. With the expansion of dispersion of global oceanic migration across the world, migration scales can gradually change. Temperate anguillid eels migrate thousands of kilometres from spawning areas to coastal and inland water habitats while retaining spawning areas in tropical areas, accompanied by seasonal downstream and spawning migrations with consequences for seasonal recruitment. Recent advances and the availability of electronic tags such as pop-up satellite archival tag could reconstruct the entire spawning migration from continental growth habitats to spawning sites with detailed migration behaviours and routes. Migration ecology and mechanisms throughout the life of anguillid eels have gradually been revealed in recent decades.

Estimations of Riverine Distribution, Abundance, and Biomass of Anguillid Eels in Japan and Taiwan Using Environmental DNA Analysis

Although populations of anguillid eels have declined remarkably in recent decades, monitoring data on the spatial and temporal variation in their dynamics are often limited, particularly for tropical eel species. As there are often sympatries of multiple eel species in tropical rivers, identifying eel species based solely on morphological characteristics is challenging. Basin-scale surveys were conducted in rivers of southern Japan and northern Taiwan to investigate (1) whether the spatial distribution, abundance, and biomass of the tropical eel species, the giant mottled eel (Anguilla marmorata), can be monitored in rivers by comparing the results obtained from environmental DNA (eDNA) analysis with data from electrofishing and (2) the riverine distribution of the sympatric A. marmorata and the temperate eel species, the Japanese eel (Anguilla japonica), in this region using eDNA analysis. Although we found an much lower abundance of A. marmorata in the study region, we identified the eDNA of the species from all of the study sites (21 sites) where it was collected by electrofishing, in addition to 22 further study sites where it was not collected directly. This indicates that eDNA analysis has a greater sensitivity for detecting A. marmorata, making it a powerful tool for monitoring the spatial distribution of the species in rivers. We found a significant positive relationship between eDNA concentration and both the abundance and biomass of A. marmorata, and eDNA concentration seemed to better reflect the abundance of the species than did biomass. eDNA of both A. japonica and A. marmorata was identified from almost all rivers, indicating the sympatry of these species in this region, although the degree of sympatry differed between rivers. Though the eDNA concentration of A. japonica decreased significantly with increasing distance from the river mouth, no significant relationship was found for A. marmorata. This study is the first to demonstrate the potential usefulness of eDNA analysis for estimating the spatial distribution, abundance, and biomass of tropical eels in rivers and to further apply this method to investigate sympatry among anguillid species. eDNA analysis can help in obtaining data on the population dynamics of tropical eels, providing invaluable information for managing these species.