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Barbieri R, Töpfer FM, Soch J, Bogler C, Sprekeler H, Haynes JD. Encoding of continuous perceptual choices in human early visual cortex. Front Hum Neurosci 2023; 17:1277539. [PMID: 38021249 PMCID: PMC10679739 DOI: 10.3389/fnhum.2023.1277539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 10/25/2023] [Indexed: 12/01/2023] Open
Abstract
Introduction Research on the neural mechanisms of perceptual decision-making has typically focused on simple categorical choices, say between two alternative motion directions. Studies on such discrete alternatives have often suggested that choices are encoded either in a motor-based or in an abstract, categorical format in regions beyond sensory cortex. Methods In this study, we used motion stimuli that could vary anywhere between 0° and 360° to assess how the brain encodes choices for features that span the full sensory continuum. We employed a combination of neuroimaging and encoding models based on Gaussian process regression to assess how either stimuli or choices were encoded in brain responses. Results We found that single-voxel tuning patterns could be used to reconstruct the trial-by-trial physical direction of motion as well as the participants' continuous choices. Importantly, these continuous choice signals were primarily observed in early visual areas. The tuning properties in this region generalized between choice encoding and stimulus encoding, even for reports that reflected pure guessing. Discussion We found only little information related to the decision outcome in regions beyond visual cortex, such as parietal cortex, possibly because our task did not involve differential motor preparation. This could suggest that decisions for continuous stimuli take can place already in sensory brain regions, potentially using similar mechanisms to the sensory recruitment in visual working memory.
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Affiliation(s)
- Riccardo Barbieri
- Bernstein Center for Computational Neuroscience and Berlin Center for Advanced Neuroimaging, Department of Neurology, Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health (BIH), Berlin, Germany
| | - Felix M. Töpfer
- Bernstein Center for Computational Neuroscience and Berlin Center for Advanced Neuroimaging, Department of Neurology, Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health (BIH), Berlin, Germany
| | - Joram Soch
- Bernstein Center for Computational Neuroscience and Berlin Center for Advanced Neuroimaging, Department of Neurology, Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health (BIH), Berlin, Germany
- German Center for Neurodegenerative Diseases, Göttingen, Germany
| | - Carsten Bogler
- Bernstein Center for Computational Neuroscience and Berlin Center for Advanced Neuroimaging, Department of Neurology, Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health (BIH), Berlin, Germany
| | - Henning Sprekeler
- Department for Electrical Engineering and Computer Science, Technische Universität Berlin, Berlin, Germany
| | - John-Dylan Haynes
- Bernstein Center for Computational Neuroscience and Berlin Center for Advanced Neuroimaging, Department of Neurology, Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health (BIH), Berlin, Germany
- Berlin School of Mind and Brain and Institute of Psychology, Humboldt-Universität zu Berlin, Berlin, Germany
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Kramer LE, Chen YC, Long B, Konkle T, Cohen MR. Contributions of early and mid-level visual cortex to high-level object categorization. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.31.541514. [PMID: 37398251 PMCID: PMC10312552 DOI: 10.1101/2023.05.31.541514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
The complexity of visual features for which neurons are tuned increases from early to late stages of the ventral visual stream. Thus, the standard hypothesis is that high-level functions like object categorization are primarily mediated by higher visual areas because they require more complex image formats that are not evident in early visual processing stages. However, human observers can categorize images as objects or animals or as big or small even when the images preserve only some low- and mid-level features but are rendered unidentifiable ('texforms', Long et al., 2018). This observation suggests that even the early visual cortex, in which neurons respond to simple stimulus features, may already encode signals about these more abstract high-level categorical distinctions. We tested this hypothesis by recording from populations of neurons in early and mid-level visual cortical areas while rhesus monkeys viewed texforms and their unaltered source stimuli (simultaneous recordings from areas V1 and V4 in one animal and separate recordings from V1 and V4 in two others). Using recordings from a few dozen neurons, we could decode the real-world size and animacy of both unaltered images and texforms. Furthermore, this neural decoding accuracy across stimuli was related to the ability of human observers to categorize texforms by real-world size and animacy. Our results demonstrate that neuronal populations early in the visual hierarchy contain signals useful for higher-level object perception and suggest that the responses of early visual areas to simple stimulus features display preliminary untangling of higher-level distinctions.
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Affiliation(s)
| | | | - Bria Long
- University of California, Los Angeles
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Lange RD, Gómez-Laberge C, Berezovskii VK, Pletenev A, Sherdil A, Hartmann T, Haefner RM, Born RT. Weak evidence for neural correlates of task-switching in macaque V1. J Neurophysiol 2023; 129:1021-1044. [PMID: 36947884 PMCID: PMC10125033 DOI: 10.1152/jn.00085.2022] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 11/29/2022] [Accepted: 12/26/2022] [Indexed: 03/24/2023] Open
Abstract
A central goal of systems neuroscience is to understand how populations of sensory neurons encode and relay information to the rest of the brain. Three key quantities of interest are 1) how mean neural activity depends on the stimulus (sensitivity), 2) how neural activity (co)varies around the mean (noise correlations), and 3) how predictive these variations are of the subject's behavior (choice probability). Previous empirical work suggests that both choice probability and noise correlations are affected by task training, with decision-related information fed back to sensory areas and aligned to neural sensitivity on a task-by-task basis. We used Utah arrays to record activity from populations of primary visual cortex (V1) neurons from two macaque monkeys that were trained to switch between two coarse orientation-discrimination tasks. Surprisingly, we find no evidence for significant trial-by-trial changes in noise covariance between tasks, nor do we find a consistent relationship between neural sensitivity and choice probability, despite recording from well-tuned task-sensitive neurons, many of which were histologically confirmed to be in supragranular V1, and despite behavioral evidence that the monkeys switched their strategy between tasks. Thus our data at best provide weak support for the hypothesis that trial-by-trial task-switching induces changes to noise correlations and choice probabilities in V1. However, our data agree with a recent finding of a single "choice axis" across tasks. They also raise the intriguing possibility that choice-related signals in early sensory areas are less indicative of task learning per se and instead reflect perceptual learning that occurs in highly overtrained subjects.NEW & NOTEWORTHY Converging evidence suggests that decision processes affect sensory neural activity, and this has informed numerous theories of neural processing. We set out to replicate and extend previous results on decision-related information and noise correlations in V1 of macaque monkeys. However, in our data, we find little evidence for a number of expected effects. Our null results therefore call attention to differences in task training, stimulus design, recording, and analysis techniques between our and prior studies.
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Affiliation(s)
- Richard D Lange
- Brain and Cognitive Sciences, Center for Visual Science, University of Rochester, Rochester, New York, United States
| | | | | | - Anton Pletenev
- Brain and Cognitive Sciences, Center for Visual Science, University of Rochester, Rochester, New York, United States
| | - Ariana Sherdil
- Neurobiology, Harvard Medical School, Boston, Massachusetts, United States
| | - Till Hartmann
- Neurobiology, Harvard Medical School, Boston, Massachusetts, United States
| | - Ralf M Haefner
- Brain and Cognitive Sciences, Center for Visual Science, University of Rochester, Rochester, New York, United States
| | - Richard T Born
- Neurobiology, Harvard Medical School, Boston, Massachusetts, United States
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Francis NA, Mukherjee S, Koçillari L, Panzeri S, Babadi B, Kanold PO. Sequential transmission of task-relevant information in cortical neuronal networks. Cell Rep 2022; 39:110878. [PMID: 35649366 PMCID: PMC9387204 DOI: 10.1016/j.celrep.2022.110878] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 02/28/2022] [Accepted: 05/05/2022] [Indexed: 11/10/2022] Open
Abstract
Cortical processing of task-relevant information enables recognition of behaviorally meaningful sensory events. It is unclear how task-related information is represented within cortical networks by the activity of individual neurons and their functional interactions. Here, we use two-photon imaging to record neuronal activity from the primary auditory cortex of mice during a pure-tone discrimination task. We find that a subset of neurons transiently encode sensory information used to inform behavioral choice. Using Granger causality analysis, we show that these neurons form functional networks in which information transmits sequentially. Network structures differ for target versus non-target tones, encode behavioral choice, and differ between correct versus incorrect behavioral choices. Correct behavioral choices are associated with shorter communication timescales, larger functional correlations, and greater information redundancy. In summary, specialized neurons in primary auditory cortex integrate task-related information and form functional networks whose structures encode both sensory input and behavioral choice. Francis et al. find that, as mice perform an auditory discrimination task, cortical neurons form functional networks in which task-relevant information transmits sequentially between neurons. Network structures encode behavioral choice, and correct behavioral choices are associated with shorter communication timescales, larger functional correlations, and greater information redundancy between neurons.
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Affiliation(s)
- Nikolas A Francis
- Department of Biology & Brain and Behavior Institute, University of Maryland, College Park, MD 20742, USA
| | - Shoutik Mukherjee
- Department of Electrical and Computer Engineering & Institute for Systems Research, University of Maryland, College Park, MD 20742, USA
| | - Loren Koçillari
- Laboratory of Neural Computation, Istituto Italiano di Tecnologia, Rovereto 38068, Italy; Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Falkenried 94, D-20251 Hamburg, Germany
| | - Stefano Panzeri
- Laboratory of Neural Computation, Istituto Italiano di Tecnologia, Rovereto 38068, Italy; Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Falkenried 94, D-20251 Hamburg, Germany.
| | - Behtash Babadi
- Department of Electrical and Computer Engineering & Institute for Systems Research, University of Maryland, College Park, MD 20742, USA.
| | - Patrick O Kanold
- Department of Biology & Brain and Behavior Institute, University of Maryland, College Park, MD 20742, USA; Department of Biomedical Engineering & Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21205, USA.
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Lange RD, Haefner RM. Task-induced neural covariability as a signature of approximate Bayesian learning and inference. PLoS Comput Biol 2022; 18:e1009557. [PMID: 35259152 PMCID: PMC8963539 DOI: 10.1371/journal.pcbi.1009557] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 03/29/2022] [Accepted: 10/12/2021] [Indexed: 11/30/2022] Open
Abstract
Perception is often characterized computationally as an inference process in which uncertain or ambiguous sensory inputs are combined with prior expectations. Although behavioral studies have shown that observers can change their prior expectations in the context of a task, robust neural signatures of task-specific priors have been elusive. Here, we analytically derive such signatures under the general assumption that the responses of sensory neurons encode posterior beliefs that combine sensory inputs with task-specific expectations. Specifically, we derive predictions for the task-dependence of correlated neural variability and decision-related signals in sensory neurons. The qualitative aspects of our results are parameter-free and specific to the statistics of each task. The predictions for correlated variability also differ from predictions of classic feedforward models of sensory processing and are therefore a strong test of theories of hierarchical Bayesian inference in the brain. Importantly, we find that Bayesian learning predicts an increase in so-called “differential correlations” as the observer’s internal model learns the stimulus distribution, and the observer’s behavioral performance improves. This stands in contrast to classic feedforward encoding/decoding models of sensory processing, since such correlations are fundamentally information-limiting. We find support for our predictions in data from existing neurophysiological studies across a variety of tasks and brain areas. Finally, we show in simulation how measurements of sensory neural responses can reveal information about a subject’s internal beliefs about the task. Taken together, our results reinterpret task-dependent sources of neural covariability as signatures of Bayesian inference and provide new insights into their cause and their function. Perceptual decision-making has classically been studied in the context of feedforward encoding/ decoding models. Here, we derive predictions for the responses of sensory neurons under the assumption that the brain performs hierarchical Bayesian inference, including feedback signals that communicate task-specific prior expectations. Interestingly, those predictions stand in contrast to some of the conclusions drawn in the classic framework. In particular, we find that Bayesian learning predicts the increase of a type of correlated variability called “differential correlations” over the course of learning. Differential correlations limit information, and hence are seen as harmful in feedforward models. Since our results are also specific to the statistics of a given task, and since they hold under a wide class of theories about how Bayesian probabilities may be represented by neural responses, they constitute a strong test of the Bayesian Brain hypothesis. Our results can explain the task-dependence of correlated variability in prior studies and suggest a reason why these kinds of correlations are surprisingly common in empirical data. Interpreted in a probabilistic framework, correlated variability provides a window into an observer’s task-related beliefs.
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Affiliation(s)
- Richard D. Lange
- Brain and Cognitive Sciences, University of Rochester, Rochester, New York, United States of America
- Center for Visual Science, University of Rochester, Rochester, New York, United States of America
- * E-mail: (RDL); (RMH)
| | - Ralf M. Haefner
- Brain and Cognitive Sciences, University of Rochester, Rochester, New York, United States of America
- Center for Visual Science, University of Rochester, Rochester, New York, United States of America
- * E-mail: (RDL); (RMH)
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Chicharro D, Panzeri S, Haefner RM. Stimulus-dependent relationships between behavioral choice and sensory neural responses. eLife 2021; 10:e54858. [PMID: 33825683 PMCID: PMC8184215 DOI: 10.7554/elife.54858] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 04/06/2021] [Indexed: 01/16/2023] Open
Abstract
Understanding perceptual decision-making requires linking sensory neural responses to behavioral choices. In two-choice tasks, activity-choice covariations are commonly quantified with a single measure of choice probability (CP), without characterizing their changes across stimulus levels. We provide theoretical conditions for stimulus dependencies of activity-choice covariations. Assuming a general decision-threshold model, which comprises both feedforward and feedback processing and allows for a stimulus-modulated neural population covariance, we analytically predict a very general and previously unreported stimulus dependence of CPs. We develop new tools, including refined analyses of CPs and generalized linear models with stimulus-choice interactions, which accurately assess the stimulus- or choice-driven signals of each neuron, characterizing stimulus-dependent patterns of choice-related signals. With these tools, we analyze CPs of macaque MT neurons during a motion discrimination task. Our analysis provides preliminary empirical evidence for the promise of studying stimulus dependencies of choice-related signals, encouraging further assessment in wider data sets.
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Affiliation(s)
- Daniel Chicharro
- Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems@UniTn, Istituto Italiano di TecnologiaRoveretoItaly
- Department of Neurobiology, Harvard Medical SchoolBostonUnited States
| | - Stefano Panzeri
- Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems@UniTn, Istituto Italiano di TecnologiaRoveretoItaly
| | - Ralf M Haefner
- Brain and Cognitive Sciences, Center for Visual Science, University of RochesterRochesterUnited States
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