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Benton R, Mermet J, Jang A, Endo K, Cruchet S, Menuz K. An integrated anatomical, functional and evolutionary view of the Drosophila olfactory system. EMBO Rep 2025:10.1038/s44319-025-00476-8. [PMID: 40389758 DOI: 10.1038/s44319-025-00476-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Revised: 04/22/2025] [Accepted: 04/25/2025] [Indexed: 05/21/2025] Open
Abstract
The Drosophila melanogaster olfactory system is one of the most intensively studied parts of the nervous system in any animal. Composed of ~50 independent olfactory neuron classes, with several associated hygrosensory and thermosensory pathways, it has been subject to diverse types of experimental analyses. However, synthesizing the available information is limited by the incomplete data and inconsistent nomenclature found in the literature. In this work, we first "complete" the peripheral sensory map through the identification of a previously uncharacterized antennal sensory neuron population expressing Or46aB, and the definition of an exceptional "hybrid" olfactory neuron class comprising functional Or and Ir receptors. Second, we survey developmental, anatomical, connectomic, functional, and evolutionary studies to generate an integrated dataset and associated visualizations of these sensory neuron pathways, creating an unprecedented resource. Third, we illustrate the utility of the dataset to reveal relationships between different organizational properties of this sensory system, and the new questions these stimulate. Such examples emphasize the power of this resource to promote further understanding of the construction, function, and evolution of these neural circuits.
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Affiliation(s)
- Richard Benton
- Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, CH-1015, Lausanne, Switzerland.
| | - Jérôme Mermet
- Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, CH-1015, Lausanne, Switzerland
| | - Andre Jang
- Department of Physiology and Neurobiology, University of Connecticut, Storrs, CT, 06269, USA
| | - Keita Endo
- RIKEN Center for Brain Science, Wako, Saitama, 351-0198, Japan
| | - Steeve Cruchet
- Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, CH-1015, Lausanne, Switzerland
| | - Karen Menuz
- Department of Physiology and Neurobiology, University of Connecticut, Storrs, CT, 06269, USA.
- Connecticut Institute for Brain and Cognitive Sciences, University of Connecticut, Storrs, CT, 06269, USA.
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Benton R, Mermet J, Jang A, Endo K, Cruchet S, Menuz K. An integrated anatomical, functional and evolutionary view of the Drosophila olfactory system. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.01.16.632927. [PMID: 39868125 PMCID: PMC11760703 DOI: 10.1101/2025.01.16.632927] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 01/28/2025]
Abstract
The Drosophila melanogaster olfactory system is one of the most intensively studied parts of the nervous system in any animal. Composed of ~60 independent olfactory neuron classes, with several associated hygrosensory and thermosensory pathways, it has been subject to diverse types of experimental analyses. However, synthesizing the available data is limited by the incompleteness and inconsistent nomenclature found in the literature. In this work, we first "complete" the peripheral sensory map through the identification of a previously uncharacterized antennal sensory neuron population expressing Or46aB, and the definition of an exceptional "hybrid" olfactory neuron class comprising functional Or and Ir receptors. Second, we survey developmental, anatomical, connectomic, functional and evolutionary studies to generate an integrated dataset of these sensory neuron pathways - and associated visualizations - creating an unprecedented comprehensive resource. Third, we illustrate the utility of the dataset to reveal relationships between different organizational properties of this sensory system, and the new questions these stimulate. These examples emphasize the power of this resource to promote further understanding of the construction, function and evolution of these neural circuits.
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Affiliation(s)
- Richard Benton
- Center for Integrative Genomics Faculty of Biology and Medicine University of Lausanne CH-1015 Lausanne Switzerland
| | - Jérôme Mermet
- Center for Integrative Genomics Faculty of Biology and Medicine University of Lausanne CH-1015 Lausanne Switzerland
| | - Andre Jang
- Department of Physiology and Neurobiology University of Connecticut Storrs Connecticut 06269 United States
| | - Keita Endo
- RIKEN Center for Brain Science Wako Saitama 351-0198 Japan
| | - Steeve Cruchet
- Center for Integrative Genomics Faculty of Biology and Medicine University of Lausanne CH-1015 Lausanne Switzerland
| | - Karen Menuz
- Department of Physiology and Neurobiology University of Connecticut Storrs Connecticut 06269 United States
- Connecticut Institute for Brain and Cognitive Sciences University of Connecticut Storrs Connecticut 06269 United States
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3
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Stupski SD, van Breugel F. Wind gates olfaction-driven search states in free flight. Curr Biol 2024; 34:4397-4411.e6. [PMID: 39067453 PMCID: PMC11461137 DOI: 10.1016/j.cub.2024.07.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 05/08/2024] [Accepted: 07/01/2024] [Indexed: 07/30/2024]
Abstract
For organisms tracking a chemical cue to its source, the motion of their surrounding fluid provides crucial information for success. Swimming and flying animals engaged in olfaction-driven search often start by turning into the direction of an oncoming wind or water current. However, it is unclear how organisms adjust their strategies when directional cues are absent or unreliable, as is often the case in nature. Here, we use the genetic toolkit of Drosophila melanogaster to develop an optogenetic paradigm to deliver temporally precise "virtual" olfactory experiences for free-flying animals in either laminar wind or still air. We first confirm that in laminar wind flies turn upwind. Furthermore, we show that they achieve this using a rapid (∼100 ms) turn, implying that flies estimate the ambient wind direction prior to "surging" upwind. In still air, flies adopt a remarkably stereotyped "sink and circle" search state characterized by ∼60° turns at 3-4 Hz, biased in a consistent direction. Together, our results show that Drosophila melanogaster assesses the presence and direction of ambient wind prior to deploying a distinct search strategy. In both laminar wind and still air, immediately after odor onset, flies decelerate and often perform a rapid turn. Both maneuvers are consistent with predictions from recent control theoretic analyses for how insects may estimate properties of wind while in flight. We suggest that flies may use their deceleration and "anemometric" turn as active sensing maneuvers to rapidly gauge properties of their wind environment before initiating a proximal or upwind search routine.
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Affiliation(s)
- S David Stupski
- Integrative Neuroscience Program, University of Nevada, Reno, 1664 N. Virginia St., Reno, NV 89557, USA; Ecology Evolution and Conservation Biology Program, University of Nevada, Reno, 1664 N. Virginia St., Reno, NV 89557, USA; Department of Mechanical Engineering, University of Nevada, Reno, 1664 N. Virginia St., Reno, NV 89557, USA
| | - Floris van Breugel
- Integrative Neuroscience Program, University of Nevada, Reno, 1664 N. Virginia St., Reno, NV 89557, USA; Ecology Evolution and Conservation Biology Program, University of Nevada, Reno, 1664 N. Virginia St., Reno, NV 89557, USA; Department of Mechanical Engineering, University of Nevada, Reno, 1664 N. Virginia St., Reno, NV 89557, USA.
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4
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Renthal R. Arthropod repellent interactions with olfactory receptors and ionotropic receptors analyzed by molecular modeling. CURRENT RESEARCH IN INSECT SCIENCE 2024; 5:100082. [PMID: 38765913 PMCID: PMC11101704 DOI: 10.1016/j.cris.2024.100082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 04/29/2024] [Accepted: 05/01/2024] [Indexed: 05/22/2024]
Abstract
The main insect chemoreceptors are olfactory receptors (ORs), gustatory receptors (GRs) and ionotropic receptors (IRs). The odorant binding sites of many insect ORs appear to be occluded and inaccessible from the surface of the receptor protein, based on the three-dimensional structure of OR5 from the jumping bristletail Machilis hrabei (MhraOR5) and a survey of a sample of vinegar fly (Drosophila melanogaster) OR structures obtained from artificial intellegence (A.I.) modeling. Molecular dynamics simulations revealed that the occluded site can become accessible through tunnels that transiently open and close. The present study extends this analysis to examine seventeen ORs and one GR docking with ligands that have known valence: nine that signal attraction and nine that signal aversion. All but one of the receptors displayed occluded ligand binding sites analogous to MhraOR5, and docking software predicted the known attractant and repellent ligands will bind to the occluded sites. Docking of the repellent DEET was examined, and more than half of the OR ligand sites were predicted to bind DEET, including receptors that signal aversion as well as those that signal attraction. However, DEET may not actually have access to all the attractant binding sites. The larger size and lower flexibility of repellent molecules may restrict their passage through the tunnel bottlenecks, which could act as filters to select access to the ligand binding sites. In contrast to ORs and GRs, the IR ligand binding site is in an extracellular domain known to undergo a large conformational change from an open to a closed state. A.I. models of two D. melanogaster IRs of known valence and two blacklegged tick (Ixodes scapularis) IRs having unknown ligands were computationally tested for attractant and repellent binding. The ligand-binding sites in the closed state appear inaccessible to the protein surface, so attractants and repellents must bind initially at an accessible site in the open state before triggering the conformational change. In some IRs, repellent binding sites were identified at exterior sites adjacent to the ligand-binding site. These may be allosteric sites that, when occupied by repellents, can stabilize the open state of an attractant IR, or stabilize the closed state of an IR in the absence of its activating ligand. The model of D. melanogaster IR64a suggests a possible molecular mechanism for the activation of this IR by H+. The amino acids involved in this proposed mechanism are conserved in IR64a from several Dipteran pest species and disease vectors, potentially offering a route to discovery of new repellents that act via the allosteric site.
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Affiliation(s)
- Robert Renthal
- Department of Neuroscience, Developmental and Regenerative Biology, University of Texas at San Antonio, San Antonio, TX, United States
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Tao L, Wechsler SP, Bhandawat V. Sensorimotor transformation underlying odor-modulated locomotion in walking Drosophila. Nat Commun 2023; 14:6818. [PMID: 37884581 PMCID: PMC10603174 DOI: 10.1038/s41467-023-42613-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 10/17/2023] [Indexed: 10/28/2023] Open
Abstract
Most real-world behaviors - such as odor-guided locomotion - are performed with incomplete information. Activity in olfactory receptor neuron (ORN) classes provides information about odor identity but not the location of its source. In this study, we investigate the sensorimotor transformation that relates ORN activation to locomotion changes in Drosophila by optogenetically activating different combinations of ORN classes and measuring the resulting changes in locomotion. Three features describe this sensorimotor transformation: First, locomotion depends on both the instantaneous firing frequency (f) and its change (df); the two together serve as a short-term memory that allows the fly to adapt its motor program to sensory context automatically. Second, the mapping between (f, df) and locomotor parameters such as speed or curvature is distinct for each pattern of activated ORNs. Finally, the sensorimotor mapping changes with time after odor exposure, allowing information integration over a longer timescale.
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Affiliation(s)
- Liangyu Tao
- School of Biomedical Engineering and Health Sciences, Drexel University, Philadelphia, PA, USA
| | - Samuel P Wechsler
- School of Biomedical Engineering and Health Sciences, Drexel University, Philadelphia, PA, USA
- Department of Neurobiology and Anatomy, Drexel University, Philadelphia, PA, USA
| | - Vikas Bhandawat
- School of Biomedical Engineering and Health Sciences, Drexel University, Philadelphia, PA, USA.
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Wu WY, Liao LH, Lin CH, Johnson RM, Berenbaum MR. Effects of pesticide-adjuvant combinations used in almond orchards on olfactory responses to social signals in honey bees (Apis mellifera). Sci Rep 2023; 13:15577. [PMID: 37730836 PMCID: PMC10511525 DOI: 10.1038/s41598-023-41818-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Accepted: 08/31/2023] [Indexed: 09/22/2023] Open
Abstract
Exposure to agrochemical sprays containing pesticides and tank-mix adjuvants has been implicated in post-bloom mortality, particularly of brood, in honey bee colonies brought into California almond orchards for pollination. Although adjuvants are generally considered to be biologically inert, some adjuvants have exhibited toxicity and sublethal effects, including decreasing survival rates of next-generation queens. Honey bees have a highly developed olfactory system to detect and discriminate among social signals. To investigate the impact of pesticide-adjuvant combinations on honey bee signal perception, we performed electroantennography assays to assess alterations in their olfactory responsiveness to the brood ester pheromone (BEP), the volatile larval pheromone β-ocimene, and the alarm pheromone 2-heptanone. These assays aimed to uncover potential mechanisms underlying changes in social behaviors and reduced brood survival after pesticide exposure. We found that combining the adjuvant Dyne-Amic with the fungicide Tilt (propiconazole) and the insecticide Altacor (chlorantraniliprole) synergistically enhanced olfactory responses to three concentrations of BEP and as well exerted dampening and compensatory effects on responses to 2-heptanone and β-ocimene, respectively. In contrast, exposure to adjuvant alone or the combination of fungicide and insecticide had no effect on olfactory responses to BEP at most concentrations but altered responses to β-ocimene and 2-heptanone. Exposure to Dyne-Amic, Altacor, and Tilt increased BEP signal amplitude, indicating potential changes in olfactory receptor sensitivity or sensilla permeability to odorants. Given that, in a previous study, next-generation queens raised by nurses exposed to the same treated pollen experienced reduced survival, these new findings highlight the potential disruption of social signaling in honey bees and its implications for colony reproductive success.
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Affiliation(s)
- Wen-Yen Wu
- Department of Entomology, University of Illinois Urbana-Champaign, 505 S. Goodwin Avenue, Urbana, IL, 61801, USA
| | - Ling-Hsiu Liao
- Department of Entomology, University of Illinois Urbana-Champaign, 505 S. Goodwin Avenue, Urbana, IL, 61801, USA.
| | - Chia-Hua Lin
- Department of Entomology, Rothenbuhler Honey Bee Research Laboratory, The Ohio State University, 2501 Carmack Road, Columbus, OH, 43210, USA
| | - Reed M Johnson
- Department of Entomology, Rothenbuhler Honey Bee Research Laboratory, The Ohio State University, 2501 Carmack Road, Columbus, OH, 43210, USA
| | - May R Berenbaum
- Department of Entomology, University of Illinois Urbana-Champaign, 505 S. Goodwin Avenue, Urbana, IL, 61801, USA
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Jayaram V, Sehdev A, Kadakia N, Brown EA, Emonet T. Temporal novelty detection and multiple timescale integration drive Drosophila orientation dynamics in temporally diverse olfactory environments. PLoS Comput Biol 2023; 19:e1010606. [PMID: 37167321 PMCID: PMC10205008 DOI: 10.1371/journal.pcbi.1010606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 05/23/2023] [Accepted: 04/03/2023] [Indexed: 05/13/2023] Open
Abstract
To survive, insects must effectively navigate odor plumes to their source. In natural plumes, turbulent winds break up smooth odor regions into disconnected patches, so navigators encounter brief bursts of odor interrupted by bouts of clean air. The timing of these encounters plays a critical role in navigation, determining the direction, rate, and magnitude of insects' orientation and speed dynamics. Disambiguating the specific role of odor timing from other cues, such as spatial structure, is challenging due to natural correlations between plumes' temporal and spatial features. Here, we use optogenetics to isolate temporal features of odor signals, examining how the frequency and duration of odor encounters shape the navigational decisions of freely-walking Drosophila. We find that fly angular velocity depends on signal frequency and intermittency-the fraction of time signal can be detected-but not directly on durations. Rather than switching strategies when signal statistics change, flies smoothly transition between signal regimes, by combining an odor offset response with a frequency-dependent novelty-like response. In the latter, flies are more likely to turn in response to each odor hit only when the hits are sparse. Finally, the upwind bias of individual turns relies on a filtering scheme with two distinct timescales, allowing rapid and sustained responses in a variety of signal statistics. A quantitative model incorporating these ingredients recapitulates fly orientation dynamics across a wide range of environments and shows that temporal novelty detection, when combined with odor motion detection, enhances odor plume navigation.
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Affiliation(s)
- Viraaj Jayaram
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, United States of America
- Quantitative Biology Institute, Yale University, New Haven, Connecticut, United States of America
- Department of Physics, Yale University, New Haven, Connecticut, United States of America
| | - Aarti Sehdev
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, United States of America
- Quantitative Biology Institute, Yale University, New Haven, Connecticut, United States of America
| | - Nirag Kadakia
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, United States of America
- Quantitative Biology Institute, Yale University, New Haven, Connecticut, United States of America
- Swartz Foundation for Theoretical Neuroscience, Yale University, New Haven, Connecticut, United States of America
| | - Ethan A. Brown
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, United States of America
- Quantitative Biology Institute, Yale University, New Haven, Connecticut, United States of America
- Yale College, Yale University, New Haven, Connecticut, United States of America
| | - Thierry Emonet
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, United States of America
- Quantitative Biology Institute, Yale University, New Haven, Connecticut, United States of America
- Department of Physics, Yale University, New Haven, Connecticut, United States of America
- Interdepartmental Neuroscience Program, Yale University, New Haven, Connecticut, United States of America
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Abstract
Among the many wonders of nature, the sense of smell of the fly Drosophila melanogaster might seem, at first glance, of esoteric interest. Nevertheless, for over a century, the 'nose' of this insect has been an extraordinary system to explore questions in animal behaviour, ecology and evolution, neuroscience, physiology and molecular genetics. The insights gained are relevant for our understanding of the sensory biology of vertebrates, including humans, and other insect species, encompassing those detrimental to human health. Here, I present an overview of our current knowledge of D. melanogaster olfaction, from molecules to behaviours, with an emphasis on the historical motivations of studies and illustration of how technical innovations have enabled advances. I also highlight some of the pressing and long-term questions.
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Affiliation(s)
- Richard Benton
- Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, CH-1015 Lausanne, Switzerland
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Validation of an Optogenetic Approach to the Study of Olfactory Behavior in the T-Maze of Drosophila melanogaster Adults. INSECTS 2022; 13:insects13080662. [PMID: 35893017 PMCID: PMC9330658 DOI: 10.3390/insects13080662] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 07/18/2022] [Accepted: 07/20/2022] [Indexed: 02/04/2023]
Abstract
Simple Summary The fruit fly (Drosophila melanogaster) has been used as a model organism to study the olfactory system of insects thanks to the wide range of genetic tools available in this species. Among these tools, optogenetics allows the immediate alteration of the functioning of certain cells with light by the targeted expression of light receptor proteins in these cells. Thus, by successively expressing these receptors in different elements of the behavioral circuit, it is possible to evaluate their effect on the final behavior of the organism. However, the use of optogenetics to dissect the receptor elements of adult olfactory behavior presents a challenge because most odorants elicit gradual attraction or avoidance depending on their concentration, complicating the representative substitution of odor by light. In this work, we explore a dual excitation model in which the subject responds to various odorant concentrations while the olfactory receptor neurons are activated by light. The dose–response curve in these flies remains odorant concentration dependent, but with reduced sensitivity compared to olfactory stimulation alone. The existence of an effect associated with each of the two stimuli, odor and light, allows us to explore the quantitative contribution of the receptor elements to olfactory behavior also by optogenetics. Abstract Optogenetics enables the alteration of neural activity using genetically targeted expression of light activated proteins for studying behavioral circuits in several species including Drosophila. The main idea behind this approach is to replace the native behavioral stimulus by the light-induced electrical activation of different points of the circuit. Therefore, its effects on subsequent steps of the circuit or on the final behavior can be analyzed. However, the use of optogenetics to dissect the receptor elements of the adult olfactory behavior presents a challenge due to one additional factor: Most odorants elicit attraction or avoidance depending on their concentration; this complicates the representative replacement of odor activation of olfactory sensory neurons (OSNs) by light. Here, we explore a dual excitation model where the subject is responding to odors while the OSNs are optogenetically activated. Thereby, we can assess if and how the olfactory behavior is modified. We measure the effects of light excitation on the response to several odorant concentrations. The dose-response curve of these flies still depends on odor concentration but with reduced sensitivity compared to olfactory stimulation alone. These results are consistent with behavioral tests performed with a background odor and suggest an additive effect of light and odor excitation on OSNs.
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