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Nishii T, Kobayashi T, Saito T, Kotoku A, Ohta Y, Kitahara S, Umehara K, Ota J, Horinouchi H, Morita Y, Noguchi T, Ishida T, Fukuda T. Deep Learning-based Post Hoc CT Denoising for the Coronary Perivascular Fat Attenuation Index. Acad Radiol 2023; 30:2505-2513. [PMID: 36868878 DOI: 10.1016/j.acra.2023.01.023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 01/06/2023] [Accepted: 01/17/2023] [Indexed: 03/05/2023]
Abstract
RATIONALE AND OBJECTIVES Coronary inflammation related to high-risk hemorrhagic plaques can be captured by the perivascular fat attenuation index (FAI) using coronary computed tomography angiography (CCTA). Since the FAI is susceptible to image noise, we believe deep learning (DL)-based post hoc noise reduction can improve diagnostic capability. We aimed to assess the diagnostic performance of the FAI in DL-based denoised high-fidelity CCTA images compared with coronary plaque magnetic resonance imaging (MRI) delivered high-intensity hemorrhagic plaques (HIPs). MATERIALS AND METHODS We retrospectively reviewed 43 patients who underwent CCTA and coronary plaque MRI. We generated high-fidelity CCTA images by denoising the standard CCTA images using a residual dense network that supervised the denoising task by averaging three cardiac phases with nonrigid registration. We measured the FAIs as the mean CT value of all voxels (range of -190 to -30 HU) located within a radial distance from the outer proximal right coronary artery wall. The diagnostic reference standard was defined as HIPs (high-risk hemorrhagic plaques) using MRI. The diagnostic performance of the FAI in the original and denoised images was assessed using receiver operating characteristic curves. RESULTS Of 43 patients, 13 had HIPs. The denoised CCTA improved the area under the curve (0.89 [95% confidence interval (CI) 0.78-0.99]) of the FAI compared with that in the original image (0.77 [95% CI, 0.62-0.91], p = 0.008). The optimal cutoff value for predicting HIPs in denoised CCTA was -69 HU with 0.85 (11/13) sensitivity, 0.79 (25/30) specificity, and 0.80 (36/43) accuracy. CONCLUSION DL-based denoised high-fidelity CCTA improved the AUC and specificity of the FAI for predicting HIPs.
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Affiliation(s)
- Tatsuya Nishii
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan.
| | - Takuma Kobayashi
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan; Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan
| | - Tatsuya Saito
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
| | - Akiyuki Kotoku
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
| | - Yasutoshi Ohta
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
| | - Satoshi Kitahara
- Department of Cardiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
| | - Kensuke Umehara
- Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan; Medical Informatics Section, QST Hospital, National Institutes for Quantum Science and Technology, Inage-ku, Chiba, Japan; Applied MRI Research, Department of Molecular Imaging and Theranostics, Institute for Quantum Medical Science, National Institutes for Quantum Science and Technology, Inage-ku, Chiba, Japan
| | - Junko Ota
- Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan; Medical Informatics Section, QST Hospital, National Institutes for Quantum Science and Technology, Inage-ku, Chiba, Japan; Applied MRI Research, Department of Molecular Imaging and Theranostics, Institute for Quantum Medical Science, National Institutes for Quantum Science and Technology, Inage-ku, Chiba, Japan
| | - Hiroki Horinouchi
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
| | - Yoshiaki Morita
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
| | - Teruo Noguchi
- Department of Cardiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
| | - Takayuki Ishida
- Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan
| | - Tetsuya Fukuda
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Osaka, Japan
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Kobayashi T, Nishii T, Umehara K, Ota J, Ohta Y, Fukuda T, Ishida T. Deep learning-based noise reduction for coronary CT angiography: using four-dimensional noise-reduction images as the ground truth. Acta Radiol 2022; 64:1831-1840. [PMID: 36475893 DOI: 10.1177/02841851221141656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Background To assess low-contrast areas such as plaque and coronary artery stenosis, coronary computed tomography angiography (CCTA) needs to provide images with lower noise without increasing radiation doses. Purpose To develop a deep learning-based noise-reduction method for CCTA using four-dimensional noise reduction (4DNR) as the ground truth for supervised learning. Material and Methods \We retrospectively collected 100 retrospective ECG-gated CCTAs. We created 4DNR images using non-rigid registration and weighted averaging three timeline CCTA volumetric data with intervals of 50 ms in the mid-diastolic phase. Our method set the original reconstructed image as the input and the 4DNR as the target image and obtained the noise-reduced image via residual learning. We evaluated the objective image quality of the original and deep learning-based noise-reduction (DLNR) images based on the image noise of the aorta and the contrast-to-noise ratio (CNR) of the coronary arteries. Further, a board-certified radiologist evaluated the blurring of several heart structures using a 5-point Likert scale subjectively and assigned a coronary artery disease reporting and data system (CAD-RADS) category independently. Results DLNR CCTAs showed 64.5% lower image noise ( P < 0.001) and achieved a 2.9 times higher CNR of coronary arteries than that in original images, without significant blurring in subjective comparison ( P > 0.1). The intra-observer agreement of CAD-RADS in the DLNR image was excellent (0.87, 95% confidence interval = 0.77–0.99) with original CCTAs. Conclusion Our DLNR method supervised by 4DNR significantly reduced the image noise of CCTAs without affecting the assessment of coronary stenosis.
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Affiliation(s)
- Takuma Kobayashi
- Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Japan
| | - Tatsuya Nishii
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Japan
| | - Kensuke Umehara
- Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan
- Medical Informatics Section, Department of Medical Technology, QST Hospital, National Institutes for Quantum Science and Technology (QST), Chiba, Japan
- Applied MRI Research, Department of Molecular Imaging and Theranostics, Institute for Quantum Medical Science, National Institutes for Quantum Science and Technology, Chiba, Japan
| | - Junko Ota
- Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan
- Medical Informatics Section, Department of Medical Technology, QST Hospital, National Institutes for Quantum Science and Technology (QST), Chiba, Japan
- Applied MRI Research, Department of Molecular Imaging and Theranostics, Institute for Quantum Medical Science, National Institutes for Quantum Science and Technology, Chiba, Japan
| | - Yasutoshi Ohta
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Japan
| | - Tetsuya Fukuda
- Department of Radiology, National Cerebral and Cardiovascular Center, Suita, Japan
| | - Takayuki Ishida
- Department of Medical Physics and Engineering, Graduate School of Medicine, Osaka University, Suita, Japan
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Yu T, Gan Q, Feng G. Modeling time series by aggregating multiple fuzzy cognitive maps. PeerJ Comput Sci 2021; 7:e726. [PMID: 34616897 PMCID: PMC8459780 DOI: 10.7717/peerj-cs.726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND The real time series is affected by various combinations of influences, consequently, it has a variety of variation modality. It is hard to reflect the variation characteristic of the time series accurately when simulating time series only by a single model. Most of the existing methods focused on numerical prediction of time series. Also, the forecast uncertainty of time series is resolved by the interval prediction. However, few researches focus on making the model interpretable and easily comprehended by humans. METHODS To overcome this limitation, a new prediction modelling methodology based on fuzzy cognitive maps is proposed. The bootstrap method is adopted to select multiple sub-sequences at first. As a result, the variation modality are contained in these sub-sequences. Then, the fuzzy cognitive maps are constructed in terms of these sub-sequences, respectively. Furthermore, these fuzzy cognitive maps models are merged by means of granular computing. The established model not only performs well in numerical and interval predictions but also has better interpretability. RESULTS Experimental studies involving both synthetic and real-life datasets demonstrate the usefulness and satisfactory efficiency of the proposed approach.
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Affiliation(s)
- Tianming Yu
- School of Automation Engineering, Northeast Electric Power University, Jilin, Jilin, China
| | - Qunfeng Gan
- College of Information and Control Engineering, Jilin Institute of Chemical Technology, Jilin, Jilin, China
| | - Guoliang Feng
- School of Automation Engineering, Northeast Electric Power University, Jilin, Jilin, China
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Otton JM, Birbara NS, Hussain T, Greil G, Foley TA, Pather N. 3D printing from cardiovascular CT: a practical guide and review. Cardiovasc Diagn Ther 2017; 7:507-526. [PMID: 29255693 DOI: 10.21037/cdt.2017.01.12] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Current cardiovascular imaging techniques allow anatomical relationships and pathological conditions to be captured in three dimensions. Three-dimensional (3D) printing, or rapid prototyping, has also become readily available and made it possible to transform virtual reconstructions into physical 3D models. This technology has been utilised to demonstrate cardiovascular anatomy and disease in clinical, research and educational settings. In particular, 3D models have been generated from cardiovascular computed tomography (CT) imaging data for purposes such as surgical planning and teaching. This review summarises applications, limitations and practical steps required to create a 3D printed model from cardiovascular CT.
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Affiliation(s)
- James M Otton
- Victor Chang Cardiac Research Institute, Sydney, NSW, Australia.,Liverpool Hospital, Sydney, NSW, Australia.,UNSW Sydney, NSW, Australia
| | | | - Tarique Hussain
- University of Texas Southwestern Medical Centre, Dallas, TX, USA
| | - Gerald Greil
- University of Texas Southwestern Medical Centre, Dallas, TX, USA
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