Soil bacterial and fungal communities of six bahiagrass cultivars

Protection of Cattle against Epizootic Bovine Abortion (EBA) Using a Live Pajaroellobacter abortibovis Vaccine

Epizootic bovine abortion (EBA) is an arthropod-borne bacterial disease that causes significant economic loss for cattle producers in the western United States. The etiologic agent, Pajaroellobacter abortibovis, is an intracellular pathogen that has yet to be cultivated in vitro, thereby requiring novel methodologies for vaccine development. A vaccine candidate, using live P. abortibovis-infected cells (P.a-LIC) harvested from mouse spleens, was tested in beef cattle. Over the course of two safety studies and four efficacy trials, safety risks were evaluated, and dosage and potencies refined. No incidence of anaphylaxis, recognized health issues or significant impact upon conception rates were noted. Vaccination did result in subclinical skin reactions. Early fetal losses were noted in two trials and were significant when the vaccine was administered within 21 days prior to conception. Administration of the EBA agent (EBAA) vaccine as a single dose, at a potency of 500 P.a–LIC, 56 days prior to breeding, provided 100% protection with no early fetal losses. Seroconversion occurred in all animals following EBAA vaccination and corresponded well with protection of the fetus from epizootic bovine abortion.

Soil bacterial community response to rhizoma peanut incorporation into Florida pastures

Incorporating legumes is one option for improving pasture fertility, sustainability, and biodiversity. Diazotrophic microorganisms, including rhizobia that form symbioses with legumes, represent a small fraction of the total soil microbial community. Yet, they can offset nitrogen (N) fertilizer inputs through their ability to convert atmospheric N₂ into plant-usable N via biological N₂ fixation (BNF). This study used amplicon sequencing of 16S rRNA genes to investigate soil bacterial community composition and diversity in grazed 'Argentine' bahiagrass (Paspalum notatum Flügge) pastures where N fertilizer was supplanted with legume-derived N from BNF in some treatments. Treatments consisted of bahiagrass fertilized with (a) mineral N (224 kg N ha^-1  yr^-1 ), (b) combination mineral N (34 kg N ha^-1  yr^-1 ) and legume-derived N via cool-season clover (CSC) (Trifolium spp.) mix, or (c) combination mineral N (34 kg N ha^-1  yr^-1 ) and legume-derived N via CSC mix and strips of Ecoturf rhizoma peanut (Arachis glabrata Benth.). Bradyrhizobium spp. relative abundance was 44% greater in the mixed pasture. Other bacterial genera with BNF or denitrification potentials were greater in pastures with legumes, whereas sequences assigned to genera associated with high litter turnover were greater in bahiagrass pastures receiving only mineral N. Soil bacteria alpha diversity was greater in pastures receiving 34 kg ha^-1  yr^-1 N fertilizer application and the CSC mix than in pastures with the CSC mix and rhizoma peanut strips. Our results demonstrate soil microbial community shifts that may affect soil C and N cycling in pastures common to the southeastern United States.

Sugarcane cultivars manipulate rhizosphere bacterial communities' structure and composition of agriculturally important keystone taxa

Different sugarcane cultivars are grown to produce renewable energy and sugar in China. However, we have a limited awareness of the interactive influence of varying sugarcane cultivars on rhizosphere bacterial structure and diversity. Assessing cultivar choice impact on soil bacterial communities is vital since bacterial taxa are frequently impacted by planting performance. Employing high-throughput Illumina sequencing, we examined bacterial communities' assemblage in the rhizosphere of six Chinese sugarcane cultivars (Regan14-62, Guitang 08-120, Haizhe 22, Guitang 08-1180, Taitang 22 and Liucheng 05-136). Our results indicated that different sugarcane cultivars have no significant influence on the Shannon index; however, their impact on richness was substantial. There was a difference in the bacterial community structure that is also associated with a change in the community composition, as determined by the DESeq2 results, suggesting that "Haizhe 22 (HZ22)" had a completely different beta diversity as compared to other five cultivars by enriching abundance of Firmicutes, Proteobacteria, Gemmatimonadetes, Saccharibacteria and Bacteroidetes and reducing the quantity of Actinobacteria, Chloroflexi, Acidobacteria, and Planctomycetes, respectively. The HZ22 rhizosphere significantly enriched six genera (e.g., Devosia, Mizugakiibacter, Mycobacterium, Nakamurella, Rhizomicrobium, and Virgibacillus) relative to other varieties, suggesting an important role in plant disease tolerance and growth development, including soil nutrient cycling and bioremediation. Analysis of similarity (ANOSIM) and correlation analysis revealed that cultivars, soil organic matter, pH and soil moisture were central factors influencing bacterial composition. These findings may help in selection of plant cultivars capable of supporting highly abundant specific beneficial microbial groups, improving plant disease resistance, growth stimulation, and soil bioremediation capabilities, further leading to improvements in breeding strategies.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s13205-021-03091-1.

Comparative analyses of sooty mould communities from Brazil and Central Europe

To gain an insight into fungal sooty mould communities on leaves of trees and shrubs in the tropics and in temperate regions, 47 biofilms of the Mata Atlântica rainforest relic and the Caatinga vegetation in the state of Sergipe, Northeast Brazil, and from Central European colline and alpine zones were compared. The four sampling sites clearly differed in composition of their epiphyllous fungal communities. The fungal OTUs from all sites belonged mainly to the Ascomycota, with Dothideomycetes being the dominant class. The core community group consisted of a few site-specific representatives in co-occurrence with the ubiquitous Mycosphaerella tassiana and Aureobasidium pullulans. Most species of the core community were dark pigmented and were accompanied by facultative unpigmented or lightly pigmented species. Among the cultivable fungal species, the proportion of melanised species was significantly more abundant in samples from the two European sites, which supports the theory of thermal melanism. The identity of the host plant had a stronger impact on fungal community composition than the presence of sap-feeding insects.

Mortierella elongata Increases Plant Biomass among Non-Leguminous Crop Species

Recent studies have shown that M. elongata (M. elongata) isolated from Populus field sites has a dual endophyte–saprotroph lifestyle and is able to promote the growth of Populus. However, little is known about the host fidelity of M. elongata and whether M. elongata strains differ from one another in their ability to promote plant growth. Here, we compared the impacts of three Populus-associated M. elongata isolates (PMI 77, PMI 93, and PMI 624) on the growth of seven different crop species by measuring plant height, plant dry biomass, and leaf area. M. elongata isolates PMI 624 and PMI 93 increased the plant height, leaf area, and plant dry weight of Citrullus lanatus, Zea mays, Solanum lycopersicum, and Cucurbita to a much greater degree than PMI 77 (33.9% to 14.1%). No significant impacts were observed for any isolate on the growth of Abelmoschus esculentus or Glycine max. On the contrary, Glycine max significantly decreased in height by 30.6% after the inoculation of M. elongata PMI 77. In conclusion, this study demonstrates that M. elongata generally promoted metrics of the plant performance among a diverse set of importantly non-leguminous crop species. Future research on understanding the molecular mechanisms that underlie strain and host variability is warranted.

Organs, Cultivars, Soil, and Fruit Properties Affect Structure of Endophytic Mycobiota of Pinggu Peach Trees

Pinggu peach (Prunus persica (L.)) has great economic and ecological value in north China. As a plant, the peach is naturally colonized by a variety of endophytic fungi, which are very important for tree growth and health. However, the mycobiota composition and their affecting factors of the peach trees are still unknown. In our study, the fungal communities in flowers, leaves, stems, and roots of the three cultivars (Dajiubao, Qingfeng, and Jingyan) of Pinggu peach trees and in the rhizosphere soils were investigated by both Illumina Miseq sequencing of ITS rDNA and traditional culturing methods. For organs, except for roots, flowers had the highest fungal richness and diversity, while the leaves had the lowest richness and diversity. Ascomycota and Basidiomycota were the most abundant phyla among samples. The fungal assemblage composition of each organ was distinctive. Fungal communities of the three cultivars also differed from each other. The fungal community structure significantly correlated with soil pH, soil K, fruit soluble solid content, and fruit titratable acidity with the redundancy analysis (RDA). Most isolated fungal strains can be found within high-throughput sequencing identified taxa. This study indicates that plant organs, the cultivars, the soil, and fruit properties may have profound effects on the endophytic fungal community structure associated with Pinggu peach trees. With this study, microbiota-mediated pathogen protection and fruit quality promotion associated with peach trees could be further studied.