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Longitudinal access and exposure to green-blue spaces and individual-level mental health and well-being: protocol for a longitudinal, population-wide record-linked natural experiment. BMJ Open 2019; 9:e027289. [PMID: 31005938 PMCID: PMC6528002 DOI: 10.1136/bmjopen-2018-027289] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Revised: 10/25/2018] [Accepted: 10/31/2018] [Indexed: 12/17/2022] Open
Abstract
INTRODUCTION Studies suggest that access and exposure to green-blue spaces (GBS) have beneficial impacts on mental health. However, the evidence base is limited with respect to longitudinal studies. The main aim of this longitudinal, population-wide, record-linked natural experiment, is to model the daily lived experience by linking GBS accessibility indices, residential GBS exposure and health data; to enable quantification of the impact of GBS on well-being and common mental health disorders, for a national population. METHODS AND ANALYSIS This research will estimate the impact of neighbourhood GBS access, GBS exposure and visits to GBS on the risk of common mental health conditions and the opportunity for promoting subjective well-being (SWB); both key priorities for public health. We will use a Geographic Information System (GIS) to create quarterly household GBS accessibility indices and GBS exposure using digital map and satellite data for 1.4 million homes in Wales, UK (2008-2018). We will link the GBS accessibility indices and GBS exposures to individual-level mental health outcomes for 1.7 million people with general practitioner (GP) data and data from the National Survey for Wales (n=~12 000) on well-being in the Secure Anonymised Information Linkage (SAIL) Databank. We will examine if these associations are modified by multiple sociophysical variables, migration and socioeconomic disadvantage. Subgroup analyses will examine associations by different types of GBS. This longitudinal study will be augmented by cross-sectional research using survey data on self-reported visits to GBS and SWB. ETHICS AND DISSEMINATION All data will be anonymised and linked within the privacy protecting SAIL Databank. We will be using anonymised data and therefore we are exempt from National Research Ethics Committee (NREC). An Information Governance Review Panel (IGRP) application (Project ID: 0562) to link these data has been approved.The research programme will be undertaken in close collaboration with public/patient involvement groups. A multistrategy programme of dissemination is planned with the academic community, policy-makers, practitioners and the public.
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Generalized estimating equations by considering additive terms for analyzing time-course gene sets data. J Korean Stat Soc 2018. [DOI: 10.1016/j.jkss.2018.05.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Study protocol for investigating the impact of community home modification services on hospital utilisation for fall injuries: a controlled longitudinal study using data linkage. BMJ Open 2018; 8:e026290. [PMID: 30381314 PMCID: PMC6224723 DOI: 10.1136/bmjopen-2018-026290] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Revised: 09/18/2018] [Accepted: 09/28/2018] [Indexed: 12/27/2022] Open
Abstract
INTRODUCTION This study will evaluate the effectiveness of home adaptations, both in preventing hospital admissions due to falls for older people, and improving timely discharge. Results will provide evidence for services at the interface between health and social care, informing policies seeking to promote healthy ageing through prudent healthcare and fall prevention. METHODS AND ANALYSIS All individuals living in Wales, UK, aged 60 years and over, will be included in the study using anonymised linked data from the Secure Anonymised Information Linkage Databank. We will use a national database of home modifications implemented by the charity organisation Care & Repair Cymru (C&R) from 2009 to 2017 to define an intervention cohort. We will use the electronic Frailty Index to assign individual levels of frailty (fit, mild, moderate or severe) and use these to create a comparator group (non-C&R) of people who have not received a C&R intervention. Coprimary outcomes will be quarterly numbers of emergency hospital admissions attributed to falls at home, and the associated length of stay. Secondary outcomes include the time in moving to a care home following a fall, and the indicative financial costs of care for individuals who had a fall. We will use appropriate multilevel generalised linear models to analyse the number of hospital admissions related to falls. We will use Cox proportional hazard models to compare the length of stay for fall-related hospital admissions and the time in moving to a care home between the C&R and non-C&R cohorts. We will assess the impact per frailty group, correct for population migration and adjust for confounding variables. Indicative costs will be calculated using financial codes for individual-level hospital stays. Results will provide evidence for services at the interface between health and social care, informing policies seeking to promote healthy ageing through prudent healthcare and prevention. ETHICS AND DISSEMINATION Information governance requirements for the use of record-linked data have been approved and only anonymised data will be used in our analysis. Our results will be submitted for publication in peer-reviewed journals. We will also work with lay members and the knowledge transfer team at Swansea University to create communication and dissemination materials on key findings.
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Emergency hospital admissions associated with a non-randomised housing intervention meeting national housing quality standards: a longitudinal data linkage study. J Epidemiol Community Health 2018; 72:896-903. [PMID: 29925668 PMCID: PMC6161658 DOI: 10.1136/jech-2017-210370] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 03/27/2018] [Accepted: 05/20/2018] [Indexed: 11/03/2022]
Abstract
BACKGROUND We investigated tenant healthcare utilisation associated with upgrading 8558 council houses to a national quality standard. Homes received multiple internal and external improvements and were analysed using repeated measures of healthcare utilisation. METHODS The primary outcome was emergency hospital admissions for cardiorespiratory conditions and injuries for residents aged 60 years and over. Secondary outcomes included each of the separate conditions, for tenants aged 60 and over, and for all ages. Council home address and intervention records for eight housing cointerventions were anonymously linked to demographic data, hospital admissions and deaths for individuals in a dynamic cohort. Counts of health events were analysed using multilevel regression models to investigate associations between receipt of each housing improvement, adjusting for potential confounding factors and regional trends. RESULTS Residents aged 60 years and over living in homes when improvements were made were associated with up to 39% fewer admissions compared with those living in homes that were not upgraded (incidence rate ratio=0.61, 95% CI 0.53 to 0.72). Reduced admissions were associated with electrical systems, windows and doors, wall insulation, and garden paths. There were small non-significant reductions for the primary outcome associated with upgrading heating, adequate loft insulation, new kitchens and new bathrooms. CONCLUSION Results suggest that hospital admissions can be avoided through improving whole home quality standards. This is the first large-scale longitudinal evaluation of a whole home intervention that has evaluated multiple improvement elements using individual-level objective routine health data.
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Is educational attainment associated with acute exposure to air pollution and pollen, and is it worse for pupils with asthma and seasonal allergic rhinitis? Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i4.904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
IntroductionThere is a lack of evidence of the adverse effects of air pollution and pollen on cognition for people with air quality related health conditions. This study explored the effects of air quality and respiratory health conditions on educational attainment for 18,241 pupils across the city of Cardiff, United Kingdom.
Objectives and ApproachAnonymised, routinely collected health and education data were linked at the household and school level with modelled high spatial resolution pollution data, and daily pollen measurements using the Secure Anonymised Information Linkage (SAIL) databank. This created 7 repeated cross-sectional cohorts (2009-2015). Multilevel linear regression analysis examined whether exam performance was associated with health status and/or air quality levels averaged at school and home locations during revision and examination periods. We also investigated the combined effects of air quality and associations with educational attainment for pupils who were treated for asthma and/or Severe Allergic Rhinitis (SAR), and those who were not.
ResultsThe cohort contained 9337 males and 8904 female pupils. There were 871 treated for asthma, 2091 for SAR, and 634 treated for both. Asthma was not associated with exam performance (p=0.700). However, SAR was positively associated with exam performance (p 2) was negatively associated with educational attainment (p = 0.002). Other indicators of air quality (pollutants: Ozone, Particulate Matter - PM2.5, and pollen) were not associated with educational attainment (p> 0.05). Exposure to NO2 was negatively associated with educational attainment irrespective of treatment for asthma or SAR. There was no combined effect of air quality on the variation in educational attainment between those who are treated for asthma and/or SAR and those who were not.
Conclusion/ImplicationsIrrespective of health status, exposure to NO2 was negatively associated with educational attainment. Treatment seeking behaviour may be a possible explanation for the positive association between SAR and educational attainment. For a more accurate reflection of health status, health outcomes not subject to treatment seeking behaviour should be investigated.
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Association between blue and green space availability with mental health and wellbeing. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i4.921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
IntroductionGreen-blue spaces (GBS), such as parks, woodlands, and beaches, may be beneficial for population mental health and wellbeing. However, there are few longitudinal studies on the association between GBS and mental health and wellbeing, and few that incorporate network analysis as opposed to simple Euclidian proximity.
Objectives and ApproachWe are examining the association between the availability of GBS with wellbeing and common mental health disorders. We will use geographic information systems (GIS) to create quarterly household level GBS availability data using digital map and satellite data (2008-2018) for over 1 million homes in Wales, United Kingdom. We will link GBS availability to individual level mental health (1.7 million people with General Practitioner (GP) data) and data from the National Survey for Wales (n = 24,000) on wellbeing (Warwick Edinburgh Mental Wellbeing Scale (WEMWBS)) using the Secure Anonymised Information Linkage (SAIL) databank.
ResultsWe created an historic dataset of GBS availability using road network and path data to create quarterly household level GBS exposures (2008-2018). We tested Residential Anonymised Linking Fields (RALFs) and accurately linked 97\% of individuals and their health data to their home and GBS exposure. The 1.65 million exposure-health data pairs, updated quarterly, will enable a longitudinal panel study to be built. Using GP recorded data on treatments, diagnoses, symptoms and prescriptions for mental health problems we identified 35,000 people had a common mental health disorder in 2016, and 24,000 people answered the National Survey for Wales questions about their wellbeing and use of GBS. We will explore how house moves, and visits to GBS change the association between GBS availability and outcomes.
Conclusion/ImplicationsThis study fills the gap in the evidence base around environmental planning policy to shape living environments to benefit health. It will inform the planning and management of GBS in urban and rural environments and contribute to international work on impacts of the built environment on mental health and wellbeing.
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Premature Mortality among People with Severe Mental Illness – New Evidence from Linked Primary Care Data. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i4.898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
IntroductionStudies assessing premature mortality in people with severe mental illness (SMI) are often based in one setting, hospital (secondary care inpatients and/or outpatients) or community (primary care). This may lead to ascertainment bias.
Objectives and ApproachThis study aimed to estimate standardised mortality ratios (SMRs) for all-cause and cause-specific mortality in people with SMI drawn from linked primary and secondary care populations compared to the general population. Standardised mortality ratios (SMRs) were calculated using the indirect method for a United Kingdom population of almost four million between 2004-2013.
ResultsThe all-cause SMR was higher in the cohort identified from secondary care hospital admissions (SMR: 2.9; 95% CI: 2.8-3.0) than from primary care (SMR: 2.2; 95% CI: 2.1-2.3) when compared to the general population. The SMR for the combined cohort was 2.6 (95% CI: 2.5-2.6). Solely hospital admission based studies may somewhat over-estimate premature mortality in those with SMI. However, there is no doubt this remains a major health inequality. Cause specific SMRs in the combined cohort were particularly elevated in those with SMI relative to the general population for ill-defined and unknown causes, suicide, and substance abuse, as well as a number of other causes.
Conclusion/ImplicationsThe ability to combine cohorts electronically from primary and secondary care is more representative of the whole population. Comprehensive characterisation of mortality is important to inform policy and practice and to discriminate settings to allow for proportionate interventions to address this health injustice.
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Multi-morbidity using General Practice drug chapters and the relationship with secondary healthcare utilisation in Wales, UK. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i4.819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
IntroductionMulti-morbidity and polypharmacy are increasing but are under investigated. Data linkage has much to offer in understanding trends in prevalence, inter-relationships between variables and impact on healthcare activity. We created Welsh population e-cohorts in 2000 and 2014 to study these issues, using the Secure Anonymised Information Linkage (SAIL) Databank.
Objectives and ApproachThe aim of this study was to measure changing prevalences of multimorbidity, initially through disease chapter prescribing and then to explore the relationship between the number of morbidities recorded in primary care and use of different hospital based outpatient services. Data linkage was used to create cohorts of Welsh residents registered to SAIL providing General Practices (GPs) for at least 360 days in 2000 and 2014. The 13 Read code drug chapters were used to calculate morbidity scores between 0 and 13. Proportional odds or cumulative logit models were used to relate GP recorded morbidities to outpatient attendance patterns.
ResultsThe GP cohorts included 1.6 million and 2.1 million population with 56.6% and 73.4% having at least one recorded morbidity for 2000 and 2014 respectively. In 2014, 5+ morbidities were most prevalent (61.3%) in 85+ year olds and least common (2.7%) in 5-9 year olds. Some 35% of individuals attended at least one outpatient specialty in 2014, varying from 22.4% for 5-9 year olds and 63.2% for 80-84 year olds.
Preliminary modelling results show the number of GP recorded morbidity chapters was strongly related to increasing outpatient attendances at different specialties, e.g. OR 15.3 (95%CI: 15.1-15.4) of being in a higher outpatient attendance category for the 5+ morbidity group relative to the zero morbidity group. Increasing age and female gender were associated with increased numbers of specialists attended whilst deprivation had a more modest impact.
Conclusion/ImplicationsThere has been a large increase in recorded multimorbidity across all age groups in Wales. In this exploratory cross-sectional design, multimorbidity was strongly related to increasing use of outpatient services. Further work is ongoing to define and utilise more refined multimorbidity metrics and incorporate longitudinal designs in analysis.
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Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophr Res 2018; 199:154-162. [PMID: 29728293 DOI: 10.1016/j.schres.2018.04.009] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Revised: 03/19/2018] [Accepted: 04/03/2018] [Indexed: 02/04/2023]
Abstract
Studies assessing premature mortality in people with severe mental illness (SMI) are usually based in one setting, hospital (secondary care inpatients and/or outpatients) or community (primary care). This may lead to ascertainment bias. This study aimed to estimate standardised mortality ratios (SMRs) for all-cause and cause-specific mortality in people with SMI drawn from linked primary and secondary care populations compared to the general population. SMRs were calculated using the indirect method for a United Kingdom population of almost four million between 2004 and 2013. The all-cause SMR was higher in the cohort identified from secondary care hospital admissions (SMR: 2.9; 95% CI: 2.8-3.0) than from primary care (SMR: 2.2; 95% CI: 2.1-2.3) when compared to the general population. The SMR for the combined cohort was 2.6 (95% CI: 2.5-2.6). Cause specific SMRs in the combined cohort were particularly elevated in those with SMI relative to the general population for ill-defined and unknown causes, suicide, substance abuse, Parkinson's disease, accidents, dementia, infections and respiratory disorders (particularly pneumonia), and Alzheimer's disease. Solely hospital admission based studies, which have dominated the literature hitherto, somewhat over-estimate premature mortality in those with SMI. People with SMI are more likely to die by ill-defined and unknown causes, suicide and other less common and often under-reported causes. Comprehensive characterisation of mortality is important to inform policy and practice and to discriminate settings to allow for proportionate interventions to address this health injustice.
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Cognitive development Respiratory Tract Illness and Effects of eXposure (CORTEX) project: Combining high spatial resolution pollution measurements with individual level data, a methodological approach. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i4.802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
IntroductionThe Secure Anonymised Information Linkage (SAIL) databank facilitated linkage of routinely collected health and education data, high spatial resolution pollution modelling and daily pollen measurements for 18,241 pupils in 7 cross-sectional cohorts across Cardiff city, UK, to investigate effects of air quality and respiratory health conditions on education attainment.
Objectives and ApproachAn urban atmospheric dispersion and chemistry modelling system (ADMS-Urban) simulated modelled hourly concentrations of air pollutants: PM2.5, PM10, NO2 and ozone levels. These were summarised into minimum, average and maximum daily readings for 4 time periods (e.g. school hours 9am-3pm) for all home and school locations across Cardiff between 2009 and 2015. The combination of different pollutants, measurements and time-periods created a comprehensive multi-row dataset per location. We transformed the dimensionality of this high-resolution data to create one row of summarised data per pupil per cohort, in preparation for statistical analysis.
Results157,361 school and home locations across Cardiff were anonymised and household linkage fields were appended to combine pollution estimates at the household/school to individual health data. The pollution dataset contained 369 columns, 472,083 rows per year with one column per location, pollutant type, pollutant measurement, daily time-period, and day of year. Dataset transformation reduced algorithm computation by creating a single date column, producing a five column, 3,446,205,900-row matrix per year dataset. The algorithm adjusted for weekends, school/bank holidays and allowed location to vary 3pm-5pm on school days when pupil location was uncertain. The algorithm calculated tailored pollution exposures per pupil for revision and examination periods, creating one row per pupil and reducing 7 years of data and 24 billion rows to 18,241.
Conclusion/ImplicationsWe successfully linked 95% of the cohorts’ household/school pollution data to their corresponding health and education data. This demonstrates data linking retrospective exposures for total populations using multiple daily locations, and extends our analysis platform for natural experiments to include daily exposure. Future work includes adding modelled route exposures.
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Combining Artificial Neural Networks, Routine Health Records and Suicide Risk Estimation. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i4.774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
IntroductionEvery year ~800,000 people die by suicide worldwide. The pathway to suicide is mediated by highly complex processes, integrating a large number of risk factor variables which are extensively dependent on one another. Unfortunately, suicide risk prediction has been a challenging problem for epidemiological studies and their application to practice.
Objectives and ApproachWe aim at exploring the feasibility of using artificial neural networks (ANNs) based on routinely collected electronic health records (EHRs) to support the identification of those at high risk of suicide when in contact with health services. We used the Secure Anonymised Information Linkage Databank UK to extract those who died by suicide between 2001 and 2015 and identify controls. We extracted risk factors from primary and secondary care about mental health, injury, substance misuse, maltreatment, sleep disorders and prescriptions. We trained a simple ANN to differentiate between cases/controls to test the feasibility of this approach.
ResultsA total of 2,604 suicide cases and 20 paired controls per case were used during 10x10 K-Fold repeated cross-validation. We obtained an error rate of 26.78% ± 1.46 differentiating between cases and controls. The distribution of controls was concentrated around estimated risks"
Conclusion/ImplicationsThe proposed method performed similar to other works based on specialized questionnaire data. Prescription of psychotropics, depression and anxiety, and self-harm were strongly linked with higher risks, followed by hospital admission and substance misuse. This is in keeping with known literature, providing evidence that the proposed approach is feasible.
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Osteoporosis and fracture risk - a linked data study in Wales. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i4.684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
IntroductionOsteoporosis is a global disease with a 30-40% lifetime fracture risk according to the World Health Organisation. Over half a million people receive treatment for fragility fractures annually in the UK. Osteoporosis incidence is rising with aging populations; however, medical secondary prevention treatment may reduce fracture risk.
Objectives and ApproachPrimary aims were to investigate if secondary medical prevention treatment following an index fracture was associated with survival and subsequent fracture risk, evaluated using a pseudonymised population based e-cohort study design. Patients aged ≥60 years with an index fragility fracture at any anatomical location were identified from the Secure Anonymised Information Linkage (SAIL) databank. Fracture data were identified from secondary care datasets (emergency department and inpatient) and the National Hip Fracture Register data. In addition linkages were made to primary care datasets for medical prescription and Office for National Statistics records for mortality, supplementing data on demographic characteristics and co-morbidity.
ResultsThe cohort comprised 81,252 cases between April 2009 and December 2016 of median age 78 years (range 60-109) and 22,896 (28%) males. Medical secondary prevention treatment was received by 29,393 cases (36%). Subsequent fractures were reported for 10,907 cases (14%) and 29,026 cases (36%) died during the study period. For those that received medical prevention, the subsequent fracture and mortality rates were 15% and 28% respectively compared to 12% and 31% for those that did not receive the prevention treatment. Further analyses will include a discrete time competing risks model.
Conclusion/ImplicationsA population based e-cohort was successfully created by linking data across multiple datasets. Preliminary findings identified that <50% of eligible patients receive secondary medical prevention treatment after an index fragility fracture. These findings may help inform and unify treatment pathways for those at risk of fragility fractures.
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Creating individual level air pollution exposures in an anonymised data safe haven: a platform for evaluating impact on educational attainment. Int J Popul Data Sci 2018; 3:412. [PMID: 32934998 PMCID: PMC7299475 DOI: 10.23889/ijpds.v3i1.412] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Introduction There is a lack of evidence on the adverse effects of air pollution on cognition for people with air quality-related health conditions. We propose that educational attainment, as a proxy for cognition, may increase with improved air quality. This study will explore whether asthma and seasonal allergic rhinitis, when exacerbated by acute exposure to air pollution, is associated with educational attainment. Objective To describe the preparation of individual and household-level linked environmental and health data for analysis within an anonymised safe haven. Also to introduce our statistical analysis plan for our study: COgnition, Respiratory Tract illness and Effects of eXposure (CORTEX). Methods We imported daily air pollution and aeroallergen data, and individual level education data into the SAIL databank, an anonymised safe haven for person-based records. We linked individual-level education, socioeconomic and health data to air quality data for home and school locations, creating tailored exposures for individuals across a city. We developed daily exposure data for all pupils in repeated cross sectional exam cohorts (2009-2015). Conclusion We have used the SAIL databank, an innovative, data safe haven to create individual-level exposures to air pollution and pollen for multiple daily home and school locations. The analysis platform will allow us to evaluate retrospectively the impact of air quality on attainment for multiple cross-sectional cohorts of pupils. Our methods will allow us to distinguish between the pollution impacts on educational attainment for pupils with and without respiratory health conditions. The results from this study will further our understanding of the effects of air quality and respiratory-related health conditions on cognition. Highlights
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The relationship between General Practice metrics of multi-morbidity and secondary healthcare utilisation in Wales, UK. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i2.535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
ObjectivesMulti-morbidity and polypharmacy are increasing and interrelated phenomena but are poorly understood. The aim of this study is to contribute to the understanding of these issues, measure the changing prevalence’s of multimorbidity/ polypharmacy and explore the relationship between multimorbidity as recorded in primary care and the use of outpatient services.
MethodsThe Secure Anonymised Information Linkage (SAIL) Databank facilitated linkage techniques to create population based e-cohorts of de-identified Welsh residents. Individuals were registered to a SAIL providing General Practice (GP) for at least 360 days in 2000 and 2014. Categories of morbidity were created using the 13 Read drug code chapters. In an initial cross sectional exploratory analysis proportional odds and cumulative logit models were used to relate GP recorded morbidities to outpatient attendance patterns in the same year.
FindingsThe GP e-cohorts included 1.6 million (2000) and 2.1 million (2001) people, with 56.6% and 73.4% having ≥1 recorded morbidity for 2000 and 2014, respectively. In 2014, groups with 5+ morbidities were most prevalent (61.3%) in 85+ year olds and least (2.7%) in 5-9 year olds. Some 35% of individuals attended ≥1 outpatient specialty in 2014; 22.4% in 5-9 year olds and 63.2% for 80-84 year olds.
Results from preliminary models showed the number of GP recorded morbidities was strongly related to increasing outpatient attendances at different specialties, OR=15.3 (95%CI:15.1-15.4) of being in a higher outpatient attendance category for the 5+ morbidity group relative to the zero morbidity group.
ConclusionPreliminary analysis has shown large increases in GP recorded multimorbidity across Wales over fifteen years and strong relationships and NHS service utilisation in cross-sectional analyses. Further work will include creating more refined definitions for multimorbidity metrics, linkage to hospital admission data, comparisons across healthcare settings and the development of longitudinal models.
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Cognitive development Respiratory Tract Illness and Effects of eXposure (CORTEX) project: Data processing challenges in combining high spatial resolution pollution level data with individual level health and education data. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i2.534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
Background and ObjectivesThere is a lack of evidence of the adverse effects of air pollution and pollen on cognition for people with air quality-related health conditions. The CORTEX project combined routinely collected health and education data, high spatial resolution air pollution modelling, and daily pollen measurements for 18,241 pupils living in Cardiff, UK, between 2009 and 2015, to investigate the acute effects of air quality and respiratory conditions on education attainment.
DatasetsAir pollutants PM2.5, PM10, NO2, and ozone levels were modelled for 157,361 home and school locations, anonymised into the Secure Anonymised Information Linkage (SAIL) Databank, and summarised into minimum, average and maximum readings for 4 daily time periods reflecting pupil home/school exposure. Adding a unique Residential Anonymised Linking Field (RALF) allowed linkage of pollution estimates to individual level data. Annual pollution datasets contained 369 columns and 472,083-rows, with one column per location, pollutant, daily time-period and day of year. Dataset transformation produced a 5 column, 3,446,205,900-row matrix per year.
Methods and ConclusionsAn algorithm using Structured Query Language (SQL) to manage data held within a relational database management system, was designed to reduce dimensionality from 24 billion to 18,241 rows of data. The algorithm calculated average means for each pollutant (PM2.5, PM10, NO2, and ozone levels) over the revision and examination periods, and summarised data into one row per pupil. The algorithm adjusted for weekends, school, and bank holidays, it calculated daily pollutant exposure for each pupil, and successfully linked 95% of pupil pollution exposures to their health and education data.
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Cohort study of osteoporosis and fracture risk in Wales: does secondary prevention achieve any benefit? Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i2.510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
BackgroundOsteoporosis is a global disease with a 30-40% lifetime fracture risk according to the World Health Organisation. Incidence is rising with aging populations; however, medical secondary prevention treatment may reduce fracture risk.
ObjectivesThe primary aim was to investigate if secondary medical prevention treatment following an index fracture was associated with survival and subsequent fracture risk.
MethodsPatients aged ≥60 years with an index fragility fracture at any anatomical location were identified from the Secure Anonymised Information Linkage (SAIL) databank. A population based e-cohort was created by linking fracture data identified from secondary care datasets and the National Hip Fracture Register data, with linkages to primary care datasets for medical prescription and Office for National Statistics records for mortality.
FindingsThe cohort comprised 81,252 cases between April 2009 and December 2016 of median age 78 years and 22,896 (28%) males. Medical secondary prevention treatment was received by 29,393 cases (36%). Subsequent fractures were reported for 10,907 cases (13%) and 29,026 cases (36%) died during the study period.
ConclusionsPreliminary findings identified that <50% of eligible patients receive secondary medical prevention treatment after an index fragility fracture. These findings may help inform and unify treatment pathways for those at risk of fragility fractures.
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Are children who are treated for asthma and seasonal allergic rhinitis disadvantaged in their educational attainment when acutely exposed to air pollution and pollen? A feasibility study. Int J Popul Data Sci 2018. [DOI: 10.23889/ijpds.v3i2.522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
BackgroundThere is a lack of evidence of the adverse effects which air quality has on cognition for people with air quality-related health conditions, these are not widely documented in the literature. Educational attainment, as a proxy for cognition, may increase with improved air quality.
ObjectivesPrepare individual and household level linked environmental and health data for analysis within an anonymised safe haven; analyse the linked dataset for our study investigating: Cognition, Respiratory Tract illness and Effects of eXposure (CORTEX).
MethodsAnonymised, routinely collected health and education data were linked with high spatial resolution pollution measurements and daily pollen measurements to provide repeated cross-sectional cohorts (2009-2015) on 18,241 pupils across the city of Cardiff, using the SAIL databank. A fully adjusted multilevel linear regression analysis examined associations between health status and/or air quality. Cohort, school and individual level confounders were controlled for. We hope that using individual-level multi-location daily exposure assessment will help to clarify the role of traffic and prevent potential community-level confounding. Combined effects of air quality on variation in educational attainment between those treated for asthma and/or Severe Allergic Rhinitis (SAR), and those not treated, was also investigated.
FindingsAsthma was not associated with exam performance (p=0.7). However, SAR was positively associated with exam performance (p<0.001). Exposure to air pollution was negatively associated with educational attainment regardless of health status.
ConclusionsIrrespective of health status, air quality was negatively associated with educational attainment. Treatment seeking behaviour may explain the positive association between SAR and educational attainment. For a more accurate reflection of health status, health outcomes not subject to treatment seeking behaviours, such as emergency hospital admission, should be investigated.
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Health impact, and economic value, of meeting housing quality standards: a retrospective longitudinal data linkage study. PUBLIC HEALTH RESEARCH 2018. [DOI: 10.3310/phr06080] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
BackgroundPoor-quality housing adversely affects residents’ health but there is a paucity of high-quality evidence to support this.ObjectiveThis research investigated the health impact of bringing housing to a national quality standard.DesignA natural experiment of improvements to housing quality analysed using repeated measures of health-care utilisation and economic outcomes at an individual person level.SettingCarmarthenshire, UK.ParticipantsA total of 32,009 residents registered for a minimum of 60 days at 8558 social homes that received housing improvements between January 2005 and March 2015.InterventionsMultiple internal and external housing improvements, including wall and loft insulation, windows and doors, heating system upgrades, new kitchens and bathrooms, garden path safety improvements and electrical system upgrades (adding power sockets, and extractor fans in kitchens and bathrooms).Main outcome measuresEmergency hospital admissions for cardiorespiratory conditions and injuries. Primary health-care utilisation for respiratory and common mental health disorders, emergency department injury attendances and health-care utilisation costs.Data sourcesCarmarthenshire County Council home address and intervention records were anonymously linked within the Secure Anonymous Information Linkage databank to demographic information from the Welsh Demographic Service data set; hospital admission data from the Patient Episode Dataset for Wales; primary care contacts and prescribed medications from general practice data; emergency department attendances from the Emergency Department Data Set; and deaths from the Office for National Statistics mortality register.MethodsThe study used a longitudinal panel design to examine changes in standard of eight housing cointervention from intervention records, and linked to individuals registered at intervention homes. Health outcomes were obtained retrospectively for each individual in a dynamic cohort and were captured for up to 123 consecutive months. An additional local authority region could not be utilised as a comparator owing to different reporting pressures resulting in the recording of a different intervention. The exposure group for each cointervention was compared with an internal reference group of people living in homes that did not receive the cointervention during their tenancy. A multilevel modelling approach was used to account for repeated observations for individuals living in intervention homes. Counts of health outcomes were analysed using negative binomial regression models to determine the effect of each cointervention that reached housing quality standards during an individual’s period of tenancy, compared with those living in properties that did not. We adjusted for potential confounding factors and for background trends in the regional general population. A cost–consequences analysis was conducted as part of the health economic evaluation.ResultsResidents aged ≥ 60 years living in homes in which electrical systems were upgraded were associated with 39% fewer admissions than those living in homes in which they were not [incidence rate ratio (IRR) 0.61, 95% confidence interval (CI) 0.53 to 0.72;p < 0.01]. Reduced admissions were also associated with windows and doors (IRR 0.71, 95% CI 0.63 to 0.81;p < 0.01), wall insulation (IRR 0.75, 95% CI 0.67 to 0.84;p < 0.01) and gardens and estates (IRR 0.73, 95% CI 0.64 to 0.83;p < 0.01) for those living in homes in which these cointervention were upgraded. There were no associations of change in emergency admissions with upgrading heating (IRR 0.91, 95% CI 0.82 to 1.01;p = 0.072), loft insulation (IRR 0.98, 95% CI 0.86 to 1.11;p = 0.695), kitchens (IRR 0.98, 95% CI 0.83 to 1.17;p = 0.843) or bathrooms (IRR 0.93, 95% CI 0.81 to 1.06;p = 0.287).LimitationsThere was no randomisation, there were incomplete data on the scale of the intervention for individual households and there were no estimates for the impact of the whole programme.ConclusionsThis complex interdisciplinary study found that hospital admissions could be avoided through improving housing quality standards.Future workAt their initiation, future non-health projects should have a built-in evaluation to allow intervention exposures to be randomly allocated to residents, with the simultaneous analysis of multiple health outcomes in one statistical model.FundingThe National Institute for Health Research Public Health Research programme.
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The relationship between alcohol use and long-term cognitive decline in middle and late life: a longitudinal analysis using UK Biobank. J Public Health (Oxf) 2018; 40:313-314. [PMID: 29462350 DOI: 10.1093/pubmed/fdy032] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 01/31/2018] [Indexed: 11/14/2022] Open
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Do doctors' attachment styles and emotional intelligence influence patients' emotional expressions in primary care consultations? An exploratory study using multilevel analysis. PATIENT EDUCATION AND COUNSELING 2018; 101:659-664. [PMID: 29102062 DOI: 10.1016/j.pec.2017.10.017] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Revised: 09/28/2017] [Accepted: 10/24/2017] [Indexed: 06/07/2023]
Abstract
OBJECTIVE To investigate whether and how doctors' attachment styles and emotional intelligence (EI) might influence patients' emotional expressions in general practice consultations. METHODS Video recordings of 26 junior doctors consulting with 173 patients were coded using the Verona Coding Definition of Emotional Sequences (VR-CoDES). Doctors' attachment style was scored across two dimensions, avoidance and anxiety, using the Experiences in Close Relationships: Short Form questionnaire. EI was assessed with the Mayer-Salovey-Caruso Emotional Intelligence Test. Multilevel Poisson regressions modelled the probability of patients' expressing emotional distress, considering doctors' attachment styles and EI and demographic and contextual factors. RESULTS Both attachment styles and EI were significantly associated with frequency of patients' cues, with patient- and doctor-level explanatory variables accounting for 42% of the variance in patients' cues. The relative contribution of attachment styles and EI varied depending on whether patients' presenting complaints were physical or psychosocial in nature. CONCLUSION Doctors' attachment styles and levels of EI are associated with patients' emotional expressions in primary care consultations. Further research is needed to investigate how these two variables interact and influence provider responses and patient outcomes. PRACTICE IMPLICATIONS Understanding how doctors' psychological characteristics influence PPC may help to optimise undergraduate and postgraduate medical education.
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A new R-based statistical software package for fitting multivariate generalized linear mixed models to large and complex datasets. Int J Popul Data Sci 2017. [PMCID: PMC9351144 DOI: 10.23889/ijpds.v1i1.355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
Abstract
ABSTRACT
ObjectiveTo demonstrate the efficiency and efficacy of the new freeware MGLMM in the statistical modelling of large and complex datasets.
ApproachThe new R-based software MGLMM (shortly to become available on the CRAN website https://cran.r-project.org/) can be used to fit a range of different multivariate generalized linear mixed models, thereby permitting a better representation of the multivariate nature of many complex socio-economic processes which may involve a range of different response types. The software MGLMM will also set records for the time taken to fit these complex models to large sets of data. The efficiency and efficacy of this new software will be demonstrated by way of a number of applications.
One such example will come from the STAR Project in which pupils were followed from kindergarten in 1985 (aged 5) to 1989 (third grade, aged 8). The pupils were assessed on their ability in both mathematics and English on an annual basis between 1985 and 1989. At the end of the kindergarten year, some of the students were reallocated to different class sizes in order ‘to achieve sexual and racial balance and to separate incompatible children’. In the fourth grade, the pupils returned to regular classes and the experiment ended.
We can regard the two score variables ‘Maths’ and ‘English’ as constituting repeated, correlated, bivariate continuous data. We will use the new package MGLMM to apply a series of bivariate normal mixed models with correlated random effects. These models will allow us to distinguish the role of prior attainment in mathematics and English on current attainment in mathematics and English in an experimental setting, for pupils in small and regular class sizes. The models will permit an examination of the effect of class size on this bivariate response, whilst controlling for a set of individual-level confounding factors such as gender and age.
ResultsWe will present the results of these analyses, thereby demonstrating the efficacy of MGLMM. We will also compare the performance of the new software with existing packages such as Stata.
ConclusionsWe will have demonstrated the gain in efficiency through the use of MGLMM, compared to other standard software packages, in the statistical modelling of large and complex datasets.
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Reusable, set-based selection algorithm for matched control groups. Int J Popul Data Sci 2017. [PMCID: PMC9351309 DOI: 10.23889/ijpds.v1i1.395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Abstract
ABSTRACT
AimsThe wealth of data available in linked administrative datasets offers great potential for research, but researchers face methodological and computational challenges in data preparation, due to the size and complexity of the data. The creation of matched control groups in the Secure Anonymised Information Linkage (SAIL) Databank illustrates this point: SAIL contains multiple health datasets describing millions of individuals in Wales. The volume of data creates the potential for more precise matching, but only if an appropriate algorithm can be applied. We aimed to create such an algorithm for reuse by many research projects.
MethodsWe developed set-based code in SQL that efficiently selects matches from millions of potential combinations in a relational database environment. It is parameterized to allow different matching criteria to be employed as needed, including follow-up time around an index event. A combinatorial optimisation problem occurs when a potential control could match more than one subject, which we solved by ranking potential match pairs first by subject with the fewest potential matches, then by closeness of the match.
ResultsOne example of the algorithm’s use was the Suicide Information Database Cymru, an electronic case-control study on suicide in Wales between 2003 and 2011. Subjects who had a cause of death recorded as self-harm were each matched to twenty controls who were alive at the subject’s date of death and had the same gender and similar birth week. The rate of matching success was >99.9%, with all subjects but one matching the full twenty controls. >99.99% of the matched controls had a week of birth that was identical to the subject. The second example was a matched cohort study looking at hospital admissions and type 1 diabetes, using the Brecon register of childhood diabetes in Wales, with matching based on week of birth within two weeks, gender, county of residence, deprivation quintile, and residence in Wales at time of diagnosis. This study had a matching rate of 98.9%; 97.5% of subjects matched to five controls, and 69.8% of matches had the same week of birth.
ConclusionsThis algorithm provides good matching performance while executing efficiently and scalably on large datasets. Its implementation as reusable code will facilitate more efficient, high-quality research in SAIL. Instead of spending many hours developing a custom solution, analysts can execute parameterized code in a few minutes. We hope it to be useful more widely beyond SAIL as well.
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Risk of mortality following discharge from Critical Care. Int J Popul Data Sci 2017. [PMCID: PMC9351040 DOI: 10.23889/ijpds.v1i1.330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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The ELAStiC (Electronic Longitudinal Alcohol Study in Communities) project. Int J Popul Data Sci 2017. [DOI: 10.23889/ijpds.v1i1.284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Abstract
ABSTRACT
ObjectivesThe ELAStiC (Electronic Longitudinal Alcohol Study in Communities) project was established to determine factors that predict pathways into alcohol misuse and the life-course effects of alcohol use and misuse on health and well-being. This is achieved through accessing existing longitudinal data that are key sources of evidence for social and health policy, developing statistical methods and modelling techniques from a diverse range of disciplines, working with stakeholders in both policy, practice and the third sector to bring relevance to the work, and to bring together a diverse team of experts to collaborate and facilitate learning across diverse fields.
ApproachThe project will link data that include cohort studies such as; UK Biobank, ALSPAC (Avon Longitudinal Study of Parents and Children), Millennium Cohort Study, British Household Panel Survey, Understanding Society, E_CATALyST (Caerphilly Health and Social Needs Electronic Cohort Study) and WECC (Wales Electronic Cohort for Children). These data will be linked with routine data from primary and secondary healthcare in England, Scotland and Wales. Additional data from education and police data source will also be linked as part of the project.
The main work packages for the project are:
Methodological InnovationsMethodological developments in mechanisms for correcting bias in reporting alcohol consumption and for combining routine data with cohort data; the application of Markov models for examining the extent to which past behaviour influences future behaviour, and econometric hedonic pricing methods for providing insights into the costs of alcohol-related harm.
Pathways into HarmDo family structure, household composition, youngsters’ previous ill-health and educational attainment predict their use of alcohol and what socio-economic factors and household transitions contribute to hazardous alcohol consumption in adults?
Secondary HarmsWhat is the effect on children’s health and educational achievement of living in households in which one or more adults has experienced alcohol-related harm?
Mental Health & Well-BeingWhat is the relationship between alcohol consumption, hospital admission and mental health in adults and children?
ResultsThe results of the data linkage between the multiple cohorts and health, education and police data will be reported. The challenges of linking cohort and other data types from different nations will be discussed.
ConclusionsOur project will aim to provide evidence that informs the UK Government’s commitment to “radically reshape the approach to alcohol and reduce the number of people drinking to excess”, by working with existing longitudinal data collected in the UK to inform policy and practice.
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The Housing Regeneration and Health Study. Int J Popul Data Sci 2017. [PMCID: PMC8362396 DOI: 10.23889/ijpds.v1i1.127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
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OP36 Evaluating youth mentoring for young people at risk of exclusion from secondary school: results from a feasibility randomised control trial study. Br J Soc Med 2016. [DOI: 10.1136/jech-2016-208064.36] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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493 Cohort study of osteoporosis and fracture risk: are we achieving benefit with secondary prevention? Inj Prev 2016. [DOI: 10.1136/injuryprev-2016-042156.493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Varisolve® polidocanol microfoam compared with surgery or sclerotherapy in the management of varicose veins in the presence of trunk vein incompetence: European randomized controlled trial. Phlebology 2016. [DOI: 10.1258/026835506779115807] [Citation(s) in RCA: 126] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Objective: To compare the safety and efficacy of Varisolve® 1% polidocanol microfoam sclerosant with alternative treatments for patients with varicose veins and trunk vein incompetence. Methods: An open-label, multicentre, prospective trial of 710 patients randomized to receive either Varisolve® or alternative treatment (surgery or sclerotherapy). The endpoint was ultrasound-determined occlusion of trunk vein(s) and elimination of reflux, analysed against a non-inferiority hypothesis. Results: Overall, non-inferiority was demonstrated with 83.4% efficacy for Varisolve® compared with 88.1% for alternative treatment at three months, and the corresponding magnitudes were 78.9 and 80.4% at 12 months. Surgery was superior to Varisolve®, but the success rate of 68.2% for Varisolve® (surgery 87.2%) was poor compared with 93.8% success for Varisolve® achieved in those randomized to Varisolve® or sclerotherapy. Varisolve® was superior to sclerotherapy at 12 months ( P = 0.001). Deep vein thrombosis occurred in 11/437 (2.5%) after Varisolve®, in 1/125 (0.8%) after sclerotherapy and in none after surgery. No pulmonary emboli were detected. Conclusion: Overall, Varisolve® was non-inferior to alternative treatment. Surgery was more efficacious, but Varisolve® caused less pain and patients returned to normal more quickly. The Varisolve® technique is a useful additional treatment for varicose veins and trunk vein incompetence.
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Missing Value Imputation for RNA-Sequencing Data Using Statistical Models: A Comparative Study. JOURNAL OF STATISTICAL THEORY AND APPLICATIONS 2016. [DOI: 10.2991/jsta.2016.15.3.3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Robust modeling of differential gene expression data using normal/independent distributions: a Bayesian approach. PLoS One 2015; 10:e0123791. [PMID: 25910040 PMCID: PMC4409222 DOI: 10.1371/journal.pone.0123791] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2014] [Accepted: 03/07/2015] [Indexed: 11/18/2022] Open
Abstract
In this paper, the problem of identifying differentially expressed genes under different conditions using gene expression microarray data, in the presence of outliers, is discussed. For this purpose, the robust modeling of gene expression data using some powerful distributions known as normal/independent distributions is considered. These distributions include the Student’s t and normal distributions which have been used previously, but also include extensions such as the slash, the contaminated normal and the Laplace distributions. The purpose of this paper is to identify differentially expressed genes by considering these distributional assumptions instead of the normal distribution. A Bayesian approach using the Markov Chain Monte Carlo method is adopted for parameter estimation. Two publicly available gene expression data sets are analyzed using the proposed approach. The use of the robust models for detecting differentially expressed genes is investigated. This investigation shows that the choice of model for differentiating gene expression data is very important. This is due to the small number of replicates for each gene and the existence of outlying data. Comparison of the performance of these models is made using different statistical criteria and the ROC curve. The method is illustrated using some simulation studies. We demonstrate the flexibility of these robust models in identifying differentially expressed genes.
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Joint modeling of mixed skewed continuous and ordinal longitudinal responses: a Bayesian approach. J Appl Stat 2015. [DOI: 10.1080/02664763.2015.1023557] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Joint modeling of multivariate longitudinal mixed measurements and time to event data using a Bayesian approach. J Appl Stat 2014. [DOI: 10.1080/02664763.2014.898132] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Robust joint modeling of longitudinal measurements and time to event data using normal/independent distributions: A Bayesian approach. Biom J 2013; 55:844-65. [DOI: 10.1002/bimj.201200272] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 05/08/2013] [Accepted: 06/01/2013] [Indexed: 11/10/2022]
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Venous thromboembolism. Br J Surg 2013; 100:989-90. [PMID: 23754642 DOI: 10.1002/bjs.9187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/29/2013] [Indexed: 11/10/2022]
Abstract
Extended treatment
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Object specificity and personal relevance in long-term visual remembering. Memory 2012; 21:261-79. [PMID: 22994894 DOI: 10.1080/09658211.2012.725738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
The personal relevance of an object is multi-faceted, each facet being capable of contributing to the effects on object memory attributed to personal relevance. An object's status as an individual object (object specificity), rather than just a category of object, is one such facet and its impact on the long-term visual remembering of everyday objects is assessed in two experiments. Images and drawings were produced under generic (e.g., "Please draw a bed") and personal exemplar (e.g., "Please draw your bed") instructions, and participants indicated the degree to which the image on which their drawing was based was of a specific object or a generic object. Object specificity induced a sense of time and place for a remembered object, the most recent encounter with the object being most salient. Other aspects of personal relevance collectively facilitated the retrieval of an object's category-irrelevant features (thereby increasing the vividness of the object image), the other objects with which it was seen, and a more general episodic sense of place. Against a broader theoretical perspective, it is proposed that visual episodic memory and visual knowledge are primary sources of information for specific personally relevant objects and generic objects, respectively.
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Social-cognitive processes in preschoolers' selective trust: three cultures compared. Dev Psychol 2012; 49:579-90. [PMID: 22946437 DOI: 10.1037/a0029864] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Research on preschoolers' selective learning has mostly been conducted in English-speaking countries. We compared the performance of Turkish preschoolers (who are exposed to a language with evidential markers), Chinese preschoolers (known to be advanced in executive skills), and English preschoolers on an extended selective trust task (N = 144). We also measured children's executive function skills and their ability to attribute false belief. Overall we found a Turkish (rather than a Chinese) advantage in selective trust and a relationship between selective trust and false belief (rather than executive function). This is the 1st evidence that exposure to a language that obliges speakers to state the sources of their knowledge may sensitize preschoolers to informant reliability. It is also the first demonstration of an association between false belief and selective trust. Together these findings suggest that effective selective learning may progress alongside children's developing capacity to assess the knowledge of others.
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Cancer-related venous thromboembolic disease: current management and areas of uncertainty. Phlebology 2012; 27 Suppl 2:53-60. [PMID: 22457305 DOI: 10.1258/phleb.2012.012s34] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The relationship between cancer and venothromboembolic events is a complex, multifactorial process which is still not fully understood and therefore the use of current generic guidelines may be inadequate. Current management of cancer-related VTE may be suboptimal because of the lack of cancer-specific studies into the role of primary prophylaxis in both ambulant and non-ambulant cancer patients. Further research into developing cancer-specific risk assessment tools and the choice, dose and duration of prophylaxis is required. The management of confirmed symptomatic VTE in cancer patients is outlined but certain controversies remain. Areas for further research include the management of asymptomatic unsuspected VTE events, recurrent VTE events on treatment and the role of IVC filters and other treatment options are required. This paper attempts to cover some of the recent developments and areas of uncertainty surrounding the management of cancer-related VTE.
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Abstract
Since the seminal work of Jarman et al in 1999, standardised mortality ratios have been published for all English hospitals in the NHS. These have been widely digested by the media, clinicians, managers and the public alike, with differences in mortality rates taken to represent variation in the overall quality of care provided by institutions. The appetite for comparative data has continued and a wealth of performance data is now made publicly available, be it from the department of Health, the Care Quality Commission, professional bodies maintaining their own specialty registries or from third-party agencies such as dr Foster.
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Object naming induces reliance on orientation-independent representations during longer-term, but not short-term, visual remembering. Memory 2011; 19:809-24. [PMID: 21992001 DOI: 10.1080/09658211.2011.613838] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
Naming novel objects with novel count nouns changes how the objects are drawn from memory, revealing that object categorisation induces reliance on orientation-independent visual representations during longer-term remembering, but not during short-term remembering. Serial position effects integrate this finding with a more established conceptualisation of short-term and longer-term visual remembering in which the former is identified as keeping an item in mind. Adults were shown a series of four novel objects in orientations in which they would not normally be drawn from memory. When not named ("Look at this object"), the objects were drawn in the orientations in which they had been seen. When named with a novel count noun (e.g., "Look at this dax"), the final object continued to be depicted in the orientation in which it had been seen, but all other objects were depicted in an unseen but preferred (canonical) orientation, even though participants could still remember the orientations in which they had been seen. Although orientation-dependent exemplar representations appear to be more accessible than orientation-independent generic representations during short-term remembering, the reverse is the case during longer-term remembering. How the theoretical framework emerging from these observations accommodates a broader body of evidence is discussed.
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Bivariate transition model for analysing ordinal and nominal categorical responses: an application to the Labour Force Survey data. J Appl Stat 2011. [DOI: 10.1080/02664761003692324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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B-type natriuretic peptide in lymphedema. Lymphology 2011; 44:29-34. [PMID: 21667820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Lymphedema often responds to compression therapy which can also cause undesirable cardiac overload if heart failure coexists. We hypothesized that the biomarker B-type natriuretic peptide (BNP) can be used to screen lymphedema patients for undetected cardiac dysfunction. We studied unselected consecutive patients with lymphedema to determine their BNP status and compared these data with those obtained from healthy subjects without known cardiovascular diseases. Out of a total of 305 subjects with lymphedema screened, 102 (33%) consented to take part in this study. The majority (87%) were female with a mean age of 60.5 +/- 13.2 (SD) years, and 47% had just lower limb swelling. The groups were equally divided between cancer and non-cancer related causes. There were 45 females and 4 males under 60 years old, and 44 female and 9 male patients over 60 years old. Median (IQR) BNP (ng/L) were as follows: <60 years females = 17.9 (15.2) (median [RR: 3 - 64] and males = 12.4 (14.7) [RR: 0.2 - 44], >60 years females = 35.8 (57.9) [RR: 2 -247)] and males = 47.2 (44.1) [RR: 2 - 238]. For this population, the BNP concentration 100 ng/L was adopted as the value to exclude heart failure. Using this definition, 7 lymphedema subjects had BNP concentrations of 120 (19.8) ng/L, and all were found to have cardiac abnormalities on echocardiography. This study demonstrated that 93% of unselected subjects with lymphedema had BNP concentrations that exclude a diagnosis of heart failure. Those subjects with elevated BNP were found on subsequent echocardiography to have cardiac abnormalities. The use of a BNP assay is of potential value in screening patients who are more likely to have cardiac failure. Indicative factors include bilateral leg swelling, over the age of 50 years, breathlessness, where there is no known cause for the swelling. A BNP assay using a BNP concentration threshold of 100 ng/L (29 pmol/L) will identify those patients who require more detailed investigations.
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Predictors of early numeracy: Is there a place for mistakes when learning about number? BRITISH JOURNAL OF DEVELOPMENTAL PSYCHOLOGY 2010. [DOI: 10.1348/026151007x174501] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Poverty transitions among families supporting a child with intellectual disability. JOURNAL OF INTELLECTUAL & DEVELOPMENTAL DISABILITY 2010; 35:224-34. [PMID: 21117880 DOI: 10.3109/13668250.2010.518562] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
BACKGROUND Little is known about child disability and dynamic aspects of poverty. METHOD Analysis of data collected over a 12-month period for families (a) supporting a child with intellectual disability (n = 370), (b) supporting a child with other disability (n = 1,418), and (c) supporting a child with no disability (n = 7,215). RESULTS When compared to families not supporting a child with disability, families supporting a child with intellectual disability were (a) more likely to be poor, (b) more likely to become poor, (c) less likely to escape from being poor. Half of poverty transitions were associated with identifiable potential trigger events. CONCLUSIONS There were few differences between families supporting or not supporting a child with disability with regard to either levels of exposure to potential trigger events or to the strength of the association between exposure and poverty transitions.
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A transition model for ordinal response data with random dropout: an application to the fluvoxamine data. J Biopharm Stat 2010; 19:658-71. [PMID: 20183432 DOI: 10.1080/10543400902964100] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Many methods are available to analyze incomplete longitudinal ordinal responses. In this paper a general transition model is proposed for longitudinal ordinal responses with random dropout. Maximum likelihood estimates are obtained for the transition probabilities when there are repeated observations. The likelihood function of the general model is partitioned to make possible the use of existing software to estimate model parameters. Some reduced forms of the model are also considered where for estimation of parameters in these models one has to use numerical optimization methods. The approach is applied to the well-known Fluvoxamine data. For these data, two important results, which have not been previously reported, are obtained: (1) some transition probabilities are estimated to be zero and (2) the model for current response, which conditions on previous response, removes the effects of some covariates that had previously been significant.
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An Appraisal of Methods for the Analysis of Longitudinal Ordinal Response Data with Random Dropout Using a Nonhomogeneous Markov Model. COMMUN STAT-SIMUL C 2010. [DOI: 10.1080/03610911003778085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Abstract
This paper examines the multinomial recurrent outcome 'teenage drinking' within a statistical modeling paradigm. The proposed statistical modeling relates drinking to a set of explanatory variables, which include subjective as well as objective measures. In order to assess the degree to which explanatory variables influence smoking, an adequate statistical model must handle the possibility that substantial variation between respondents will be due to omitted variables, multicollinearity and past behavior. To address these issues, longitudinal data using appropriate statistical modeling are essential. In this paper we demonstrate the application of appropriate longitudinal modeling using data from the Yorkshire (UK) Health Related Behavior Questionnaire. The results suggest there may be substantial heterogeneity due to omitted variables in the data and complex inter-relationships between observed explanatory variables. For example, social cultures of drinking and parental involvement appear to influence heavy drinking and drug use.
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Child disability, parental self-rated health and food security: A multivariate cross-sectional analysis. ACTA ACUST UNITED AC 2009. [DOI: 10.1515/ijdhd.2009.8.4.417] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Children's understanding of advertising: an investigation using verbal and pictorially cued methods. INFANT AND CHILD DEVELOPMENT 2008. [DOI: 10.1002/icd.535] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Biparental care and offspring begging strategies: hungry nestling blue tits move towards the father. Anim Behav 2008. [DOI: 10.1016/j.anbehav.2007.04.024] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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