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Corrigendum to 'Phoenicibacter congonensis' gen. nov., sp. nov., a new bacterium isolated from the human gut of a pygmy woman. New Microbes New Infect 2019; 30:100553. [PMID: 31061712 DOI: 10.1016/j.nmni.2019.100553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
[This corrects the article DOI: 10.1016/j.nmni.2017.04.003.].
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Non-contiguous finished genome sequencing and description of Enterococcus timonensis sp. nov. isolated from human sputum. New Microbes New Infect 2019; 29:100532. [PMID: 31011427 PMCID: PMC6461582 DOI: 10.1016/j.nmni.2019.100532] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Accepted: 03/14/2019] [Indexed: 12/22/2022] Open
Abstract
Enterococcus timonensis sp. nov., strain Marseille-P2817T, is a facultatively anaerobic, motile and non-spore-forming Gram-positive coccus which was isolated from the sputum of a healthy adult man in Marseilles. We present herein its phenotypic description together with MALDI-TOF (matrix-assisted laser-desorption/ionization time-of-flight) mass spectrometry analysis and genome sequencing and comparison. The genome of Enterococcus timonensis is 2 123 933 bp long with 38.46 mol% of G+C content, and it contains 1983 protein-coding genes and 65 RNA genes (including nine rRNA genes).
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3
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Naming microorganisms: the contribution of the IHU Méditerranée Infection, Marseille, France. New Microbes New Infect 2018; 26:S89-S95. [PMID: 30402249 PMCID: PMC6205575 DOI: 10.1016/j.nmni.2018.08.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Revised: 07/13/2018] [Accepted: 08/03/2018] [Indexed: 12/22/2022] Open
Abstract
The number of isolated new microorganisms has dramatically increased after the readaption of culture using the culturomics approach. Each of these microorganisms is deposited in an international strain collection institute, with its name being attributed and published by the scientist who isolated it. The attributed name is of Latin or Latinized origin and chosen on the basis of the geographical location of the sample collection, the institute or geographical region where the project was being performed, the name of a concerned scientist, and characteristics of the sample or the microorganism. Our institution has played an important role in the isolation of new microorganisms, with the first effort reporting 468 new bacterial species (3% of the bacterial species isolated at least once worldwide) and 327 species isolated for the first time from human beings, which in turn resulted in an increase of 30% of the total number of microorganisms isolated. Additionally, more than 100 giant viruses, including seven new species, have been isolated at our institute. In the present work, after recalling the rules of nomenclature, we detail the naming of the new microorganisms chosen at our laboratory. The most common species name was massiliensis, attributed 161 times. We consider it imperative for the cultivators, who have frequently made considerable efforts in the field of microbial culture, to be the ones who name the newly isolated microorganisms, taking into consideration the Latinized nomenclature standards.
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Noncontiguous finished genome sequences and description of Bacteroides mediterraneensis sp. nov., Bacteroides ihuae sp. nov., Bacteroides togonis sp. nov., Bacteroides ndongoniae sp. nov., Bacteroides ilei sp. nov. and Bacteroides congonensis sp. nov. identified by culturomics. New Microbes New Infect 2018; 26:73-88. [PMID: 30258636 PMCID: PMC6154776 DOI: 10.1016/j.nmni.2018.06.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Revised: 06/08/2018] [Accepted: 06/13/2018] [Indexed: 12/22/2022] Open
Abstract
Culturomics is a concept developing different culture conditions in order to enlarge our knowledge of the human microbiota through the discovery of previously uncultured bacteria. This enabled us to isolate six new species of the Bacteroides genus: Bacteroides mediterraneensis strain Marseille-P2644, Bacteroides ihuae strain Marseille-P2824, Bacteroides togonis strain Marseille-P3166, Bacteroides ndongoniae strain Marseille-P3108, Bacteroides ilei strain Marseille-P3208 and Bacteroides congonensis strain Marseille-P3132. Those bacteria are Gram-negative anaerobic bacilli. We describe here their phenotypic features, together with phylogenetic analysis, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry spectrum, fatty acid composition, and genome sequencing and annotation.
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Noncontiguous finished genome sequences and descriptions of Actinomyces ihuae, Actinomyces bouchesdurhonensis, Actinomyces urinae, Actinomyces marseillensis, Actinomyces mediterranea and Actinomyces oralis sp. nov. identified by culturomics. New Microbes New Infect 2018; 25:30-44. [PMID: 29992027 PMCID: PMC6036942 DOI: 10.1016/j.nmni.2018.06.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 06/05/2018] [Accepted: 06/10/2018] [Indexed: 11/22/2022] Open
Abstract
The taxonogenomic approach, including the culturomics techniques, is now currently used to isolate and characterize new bacteria. These approaches notably allowed us to discover six new species of the Actinomyces genus: Actinomyces ihuae strain SD1, Actinomyces bouchesdurhonensis strain Marseille-P2825, Actinomyces urinae strain Marseille-P2225, Actinomyces marseillensis strain Marseille-P2818, Actinomyces mediterranea strain Marseille-P3257 and Actinomyces oralis strain Marseille-P3109. Each is the type strain of the corresponding bacterial species. 16S ribosomal RNA gene sequence comparison was used to classify these strains among the Actinomyces genus. These strains are all Gram positive, rod shaped and facultative aerobic. We describe the main characteristics of each bacterium and present their complete genome sequence and annotation.
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6
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'Selenomonas massiliensis,' a new anaerobic bacterial species isolated from human oral microbiota. New Microbes New Infect 2018; 24:1-3. [PMID: 29922467 PMCID: PMC6004730 DOI: 10.1016/j.nmni.2018.03.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 03/14/2018] [Accepted: 03/20/2018] [Indexed: 12/22/2022] Open
Abstract
We report the main characteristics of 'Selenomonas massiliensis' sp. nov., strain Marseille-P4036T (= CSUR P4036). The culturomic combined with taxonogenomic methods were used to identify and characterize this new anaerobic bacterial species, which was isolated from an oral sample of a 25-year-old healthy woman.
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'Bacteroides cutis,' a new bacterial species isolated from human skin. New Microbes New Infect 2018; 22:17-18. [PMID: 29556403 PMCID: PMC5857168 DOI: 10.1016/j.nmni.2017.12.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Accepted: 12/21/2017] [Indexed: 12/22/2022] Open
Abstract
We report the main characteristics of 'Bacteroides cutis' sp. nov., strain Marseille-P4118T (= CSUR P4118), a new species within the genus Bacteroides. This strain was isolated from a skin sample of a 75-year-old man from Marseille.
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Sanguibacter massiliensis sp. nov., Actinomyces minihominis sp. nov., Clostridium minihomine sp. nov., Neobittarella massiliensis gen. nov. and Miniphocibacter massiliensis gen. nov., new bacterial species isolated by culturomics from human stool samples. New Microbes New Infect 2018; 24:21-25. [PMID: 29922471 PMCID: PMC6004731 DOI: 10.1016/j.nmni.2018.03.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 03/05/2018] [Accepted: 03/09/2018] [Indexed: 02/06/2023] Open
Abstract
We present the description of Sanguibacter massiliensis sp. nov., Actinomyces minihominis sp. nov., Clostridium minihomine sp. nov., Neobittarella massiliensis gen. nov. and Miniphocibacter massiliensis gen. nov., new bacterial species isolated by culturomics from human stool samples.
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Peptoniphilus lacydonensis sp. nov., a new human-associated species isolated from a patient with chronic refractory sinusitis. New Microbes New Infect 2018; 23:61-69. [PMID: 29707211 PMCID: PMC5918139 DOI: 10.1016/j.nmni.2018.02.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 02/01/2018] [Accepted: 02/14/2018] [Indexed: 11/04/2022] Open
Abstract
Strain EL1T was isolated from a sinus sample of an 85-year-old man with chronic refractory sinusitis complicating ethmoidal adenocarcinoma. We studied its phenotypic and genomic characteristics. This is a Gram stain–positive, anaerobic and microaerophilic coccus. Cells are catalase negative, nonmotile and non–spore forming. The major fatty acids are saturated hexadecanoic acid (34%), unsaturated 9-octadecenoic acid (32%) and 9.12-octadecadienoic acid (21%). The 1.86 Mb long genome exhibits a 29.9% G+C content and contains 1750 protein-coding and 43 RNA genes. On the basis of these data, we propose the creation of the new human-associated bacterial species Peptoniphilus lacydonensis sp. nov.
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'Collinsella provencensis' sp. nov., 'Parabacteroides bouchesdurhonensis' sp. nov. and 'Sutterella seckii,' sp. nov., three new bacterial species identified from human gut microbiota. New Microbes New Infect 2018; 23:44-47. [PMID: 29556409 PMCID: PMC5854914 DOI: 10.1016/j.nmni.2018.02.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Revised: 01/31/2018] [Accepted: 02/09/2018] [Indexed: 12/22/2022] Open
Abstract
We report here the main characteristics of ‘Collinsella provencensis’ strain Marseille-P3740 (CSUR P3740), ‘Parabacteroides bouchesdurhonensis’ strain Marseille-P3763 (CSUR P3763) and ‘Sutterella seckii’ strain Marseille-P3660 (CSUR P3660), which were isolated using culturomics from the human gut microbiota of healthy individuals living in Marseille.
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'Citricoccus massiliensis' sp. nov., a new bacterial species isolated from human skin by culturomics. New Microbes New Infect 2018; 23:83-85. [PMID: 29692910 PMCID: PMC5913060 DOI: 10.1016/j.nmni.2018.02.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Revised: 01/31/2018] [Accepted: 02/09/2018] [Indexed: 12/22/2022] Open
Abstract
We report the main characteristics of 'Citricoccus massiliensis'strain Marseille-P4330, a new species within the genus Citricoccus. This strain was isolated from the skin of a healthy human man living in Dielmo, Senegal, Western Africa.
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12
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‘ Massilimalia timonensis ’ sp. nov., a new bacterium species isolated from human faeces after decontamination with alcohol. New Microbes New Infect 2018; 21:86-87. [PMID: 29379603 PMCID: PMC5785910 DOI: 10.1016/j.nmni.2017.10.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Revised: 09/14/2017] [Accepted: 10/26/2017] [Indexed: 11/06/2022] Open
Abstract
We describe the main characteristics of a new bacterial species ‘Massilimalia timonensis’ sp. nov. The type strain Marseille-P3753T (=CSUR P3753) was isolated from the stool of a healthy Senegalese man.
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‘Brevibacterium ihuae’ sp. nov., isolated from a stool sample of a healthy 25-year-old woman. New Microbes New Infect 2018; 21:49-50. [PMID: 29204284 PMCID: PMC5709316 DOI: 10.1016/j.nmni.2017.10.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Revised: 09/14/2017] [Accepted: 10/04/2017] [Indexed: 11/27/2022] Open
Abstract
We report the main characteristics of ‘Brevibacterium ihuae’ strain cv3T isolated from a stool sample of a healthy 25-year-old woman.
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Libanicoccus massiliensis gen. nov., sp. nov., a new bacterium isolated from human stool. New Microbes New Infect 2018; 21:63-71. [PMID: 29204287 PMCID: PMC5711663 DOI: 10.1016/j.nmni.2017.11.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 11/06/2017] [Accepted: 11/06/2017] [Indexed: 01/21/2023] Open
Abstract
Strain Marseille-P3237 was isolated from a stool sample of a healthy 35-year-old Congolese pygmy female. This anaerobic, Gram-negative, non-spore-forming and non-motile coccus-shaped bacterium is a member of the order Coriobacteriales. It exhibits a 2 009 306-bp genome with a 65.46 mol% G+C content and is closely related to, but distinct from, members of the Olsenella genus. We propose the creation of the new genus Libanicoccus gen. nov. and of the new species Libanicoccus massiliensis sp. nov.
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'Enterococcus timonensis' sp. nov., 'Actinomyces marseillensis' sp. nov., 'Leptotrichia massiliensis' sp. nov., 'Actinomyces pacaensis' sp. nov., 'Actinomyces oralis' sp. nov., 'Actinomyces culturomici' sp. nov. and 'Gemella massiliensis' sp. nov., new bacterial species isolated from the human respiratory microbiome. New Microbes New Infect 2017; 22:37-43. [PMID: 29556407 PMCID: PMC5857164 DOI: 10.1016/j.nmni.2017.12.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Revised: 12/01/2017] [Accepted: 12/07/2017] [Indexed: 11/18/2022] Open
Abstract
We report the main characteristics of ‘Enterococcus timonensis’ strain Marseille-P2817T (CSUR P2817), ‘Leptotrichia massiliensis’ sp. nov., strain Marseille-P3007T (CSUR P3007), ‘Actinomyces marseillensis’ sp. nov., strain Marseille-P2818T (CSUR P2818), ‘Actinomyces pacaensis’ sp. nov., strain Marseille-P2985T (CSUR P2985), ‘Actinomyces oralis’ sp. nov., strain Marseille-P3109T (CSUR P3109), ‘Actinomyces culturomici’ sp. nov., strain Marseille-P3561T (CSUR P3561) and ‘Gemella massiliensis’ sp. nov., strain Marseille-P3249T (CSUR P3249) which were isolated from human sputum samples.
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16
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'Lactobacillus raoultii' sp. nov., a new bacterium isolated from the vaginal flora of a woman with bacterial vaginosis. New Microbes New Infect 2017; 21:20-22. [PMID: 29204281 PMCID: PMC5709347 DOI: 10.1016/j.nmni.2017.10.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Revised: 09/06/2017] [Accepted: 10/10/2017] [Indexed: 11/29/2022] Open
Abstract
We report the isolation of a new bacterium species, ‘Lactobacillus raoultii’ strain Marseille P4006 (CSUR P4006), isolated from a vaginal sample of a 45-year-old woman with bacterial vaginosis.
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Noncontiguous finished genome sequence and description of Mediterranea massiliensis gen. nov., sp. nov., a new member of the Bacteroidaceae family isolated from human colon. New Microbes New Infect 2017; 21:105-116. [PMID: 29321938 PMCID: PMC5751998 DOI: 10.1016/j.nmni.2017.11.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Revised: 11/17/2017] [Accepted: 11/27/2017] [Indexed: 12/22/2022] Open
Abstract
Strain Marseille-P2645T was isolated in a colon sample from a Frenchwoman who underwent a colonoscopy. Bacterial cells were Gram negative, non–spore forming, mobile and strictly anaerobic. The genome of strain Marseille-P2645T is 3 950 441 bp long and contains 3374 protein-coding genes. The DNA G+C content is of 51.66 mol%. Strain Marseille-P2645T exhibited a 92.9% sequence similarity with Bacteroides helcogenes strain P36-108T (GenBank accession no. CP002352), the phylogenetically closest species with standing in nomenclature. Strain Marseille-P2645T (= CSUR P2645 = DSM 103034) is therefore a candidate as a type species of a new genus belonging to the Bacteroidaceae family, for which the name of Mediterranea massiliensis gen. nov., sp. nov., is proposed.
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Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense', 'Clostridium merdae', 'Clostridium massilidielmoense' and 'Clostridium nigeriense'. New Microbes New Infect 2017; 21:128-139. [PMID: 29348922 PMCID: PMC5767839 DOI: 10.1016/j.nmni.2017.11.003] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Revised: 11/09/2017] [Accepted: 11/16/2017] [Indexed: 12/29/2022] Open
Abstract
Culturomics investigates microbial diversity of the human microbiome by combining diversified culture conditions, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and 16S rRNA gene identification. The present study allowed identification of four putative new Clostridium sensu stricto species: ‘Clostridium amazonitimonense’ strain LF2T, ‘Clostridium massilidielmoense’ strain MT26T, ‘Clostridium nigeriense’ strain Marseille-P2414T and ‘Clostridium merdae’ strain Marseille-P2953T, which we describe using the concept of taxonogenomics. We describe the main characteristics of each bacterium and present their complete genome sequence and annotation.
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Genome sequence and description of Mobilicoccus massiliensis sp. nov. isolated from the stool of a Nigerian boy with kwashiorkor. New Microbes New Infect 2017; 20:18-24. [PMID: 29158905 PMCID: PMC5682880 DOI: 10.1016/j.nmni.2017.08.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Revised: 08/30/2017] [Accepted: 08/31/2017] [Indexed: 11/08/2022] Open
Abstract
Mobilicoccus massiliensis strain SIT2 (= CSUR P1306 = DSM 29065) is a new type strain of Mobilicoccus sp. nov. isolated from the stool of a 2-year-old Nigerian boy with kwashiorkor. M. massiliensis is Gram positive, facultatively anaerobic, nonsporulating and motile. The 3 842 438 bp long genome contains 3362 protein-coding and 49 RNA genes, including one 5S rRNA gene, one 16S rRNA gene, one 23S rRNA gene and 46 tRNA genes.
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Description of 'Arabia massiliensis' gen. nov., sp. nov., 'Gordonibacter massiliensis' sp. nov., and 'Bacilliculturomica massiliensis' gen. nov., sp. nov., isolated from a faecal specimen of a 50-year-old Saudi Bedouin woman. New Microbes New Infect 2017; 19:87-90. [PMID: 28794883 PMCID: PMC5537403 DOI: 10.1016/j.nmni.2017.05.011] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 05/18/2017] [Accepted: 05/22/2017] [Indexed: 12/22/2022] Open
Abstract
We report here the main characteristics of ‘Arabia massiliensis’ strain Marseille-P3078T gen. nov., sp. nov., ‘Gordonibacter massiliensis’ Marseille-P2775T sp. nov. and ‘Bacilliculturomica massiliensis’ strain Marseille-P3303 gen. nov., sp. nov. The culturomics approach combined with taxonogenomics was used to characterize these strains, which were all isolated from a faecal specimen of a 50-year-old Saudi Bedouin woman.
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Description of ' Beduinibacterium massiliense' gen. nov., sp. nov., ' Massilimaliae massiliensis' gen. nov., sp. nov., ' Provencibacterium massiliense' gen. nov., sp. nov. and ' Oscilibacter massiliensis' sp. nov., isolated from a faecal specimen of a 19-year-old healthy Saudi Arabian Bedouin by culturomics. New Microbes New Infect 2017; 19:78-82. [PMID: 28725440 PMCID: PMC5504076 DOI: 10.1016/j.nmni.2017.05.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 05/04/2017] [Accepted: 05/04/2017] [Indexed: 11/26/2022] Open
Abstract
We report here the main characteristics of ‘Beduinibacterium massiliense’ strain Marseille-P3337T gen. nov., sp. nov., ‘Massilimaliae massiliensis’ Marseille-P2963T gen. nov., sp. nov., ‘Provencibacterium massiliense’ Marseille-P2780T gen. nov., sp. nov. and ‘Oscilibacter massiliensis’ Marseille-P2778T sp. nov., all isolated from the stool of a Bedouin from Saudi Arabia. We used a bacterial culturomics approach combined with taxonogenomics.
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' Phoenicibacter massiliensis' gen. nov., sp. nov., a new bacterium isolated from the human gut of a pygmy woman. New Microbes New Infect 2017; 19:43-44. [PMID: 28706722 PMCID: PMC5496386 DOI: 10.1016/j.nmni.2017.04.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Revised: 04/05/2017] [Accepted: 04/10/2017] [Indexed: 11/18/2022] Open
Abstract
This study supports the main characteristics of the new genus and new species 'Phoenicibacter massiliensis' strain Marseille-P3241T (CSUR P3241), a new bacterium isolated from a stool sample of a healthy 47-year-old pygmy woman.
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Noncontiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics. New Microbes New Infect 2017; 20:1-13. [PMID: 28912952 PMCID: PMC5583396 DOI: 10.1016/j.nmni.2017.07.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Revised: 06/14/2017] [Accepted: 07/05/2017] [Indexed: 12/22/2022] Open
Abstract
Microbial culturomics represents a completely new approach to investigate microbial diversity by using different optimized culture conditions, mass spectrometry, genome sequencing and annotation and phenotypic description that allow for an extensive characterization of new species and the study of the human microbiome. Here we present four new species within the genus Paenibacillus: ‘Paenibacillus bouchesdurhonensis’ strain Marseille-P3071T, ‘Paenibacillus rubinfantis’ strain MT18T, ‘Paenibacillus senegalimassiliensis’ strain SIT18T and ‘Paenibacillus tuaregi’ strain Marseille-P2472T, which are all facultatively aerobic and Gram-positive bacilli.
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'Marasmitruncus massiliensis' gen. nov., sp. nov., 'Clostridium culturomicum' sp. nov., 'Blautia provencensis' sp. nov., 'Bacillus caccae' sp. nov. and 'Ornithinibacillus massiliensis' sp. nov., isolated from stool samples of undernourished African children. New Microbes New Infect 2017; 19:38-42. [PMID: 28702201 PMCID: PMC5491483 DOI: 10.1016/j.nmni.2017.05.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Revised: 04/27/2017] [Accepted: 05/09/2017] [Indexed: 12/22/2022] Open
Abstract
We report here the main characteristics of five new species, ‘Marasmitruncus massiliensis’ strain Marseille-P3646T (CSUR P3646), ‘Clostridium culturomicum’ strain Marseille-P3545T (CSUR P3545), ‘Blautia provencensis’ strain Marseille-P3502T (CSUR P3502), ‘Bacillus caccae’ strain Marseille-P3604T (CSUR P3604) and ‘Ornithinibacillus massiliensis’ strain Marseille-P3601T (CSUR P3601), which were isolated recently from undernourished children's stool samples from Niger using microbial culturomics.
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'Metaprevotella massiliensis' gen. nov., sp. nov., isolated from human ileum. New Microbes New Infect 2017; 17:33-35. [PMID: 28275438 PMCID: PMC5328708 DOI: 10.1016/j.nmni.2016.11.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Revised: 10/27/2016] [Accepted: 11/04/2016] [Indexed: 11/17/2022] Open
Abstract
We report here the main characteristics of 'Metaprevotella massiliensis' strain Marseille-P-3114T (CSURP3114) that was isolated from a human ileum sample.
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‘Caecibacter massiliensis’ gen. nov., sp. nov., isolated from human right colon. New Microbes New Infect 2017; 17:30-32. [PMID: 28275437 PMCID: PMC5328711 DOI: 10.1016/j.nmni.2016.11.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 11/14/2016] [Accepted: 11/18/2016] [Indexed: 12/01/2022] Open
Abstract
We report here the main characteristics of ‘Caecibacter massiliensis’ strain Marseille-P-2974T (CSUR P2974), which was isolated from a human right colon sample.
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27
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Noncontiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics. New Microbes New Infect 2017; 19:45-59. [PMID: 28706723 PMCID: PMC5496451 DOI: 10.1016/j.nmni.2017.04.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 04/06/2017] [Accepted: 04/13/2017] [Indexed: 11/02/2022] Open
Abstract
Microbial culturomics, which investigates microbial diversity by combining diversified culture conditions, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and 16S rDNA identification, allowed to identify five new species within the Bacillus genus. Bacillus massiliglaciei strain Marseille-P2600T, Bacillus mediterraneensis strain Marseille-P2384T, Bacillus massilinigeriensis strain Marseille-P2366T, Bacillus tuaregi strain Marseille-P2489T and Bacillus phocaeensis strain SIT16T are each the type strain of the corresponding bacterial species. These strains, the genomes of which are described here, are facultative anaerobic Gram-positive bacilli. Here, we describe the main characteristics of each bacterium and present their complete genome sequence and annotation.
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' Khelaifiella massiliensis', ' Niameybacter massiliensis', ' Brachybacterium massiliense', ' Enterobacter timonensis', ' Massilibacillus massiliensis', new bacterial species and genera isolated from the gut microbiota of healthy infants. New Microbes New Infect 2017; 19:1-7. [PMID: 28652919 PMCID: PMC5477064 DOI: 10.1016/j.nmni.2017.02.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 02/27/2017] [Indexed: 11/30/2022] Open
Abstract
The main characteristics of 'Khelaifiella massiliensis' strain Mt13T (= CSUR P1935, = DSM100591), 'Niameybacter massiliensis' strain Mt14T (= CSUR P1909, = DSM100592), 'Brachybacterium massiliense' strain MT5T (= CSUR P2240, = DSM101766), 'Enterobacter timonensis' strain mt20T (= CSUR P2201, = DSM 101775) and 'Massilibacillus massiliensis' strain Marseille-P2411T (= CSUR P2411, = DSM102838), new species isolated from the gut of healthy African infants, are presented.
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29
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'Millionella massiliensis' gen. nov., sp. nov., a new bacterial species isolated from human right colon. New Microbes New Infect 2017; 17:11-12. [PMID: 28275429 PMCID: PMC5328713 DOI: 10.1016/j.nmni.2016.11.016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 11/10/2016] [Accepted: 11/15/2016] [Indexed: 02/01/2023] Open
Abstract
We report here the main characteristics of 'Millionella massiliensis' strain Marseille-P3215T (= CSUR P3215), which was isolated from a human right colon liquid sample.
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30
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'Colidextribacter massiliensis' gen. nov., sp. nov., isolated from human right colon. New Microbes New Infect 2017; 17:27-29. [PMID: 28275436 PMCID: PMC5328710 DOI: 10.1016/j.nmni.2016.11.023] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 11/20/2016] [Accepted: 11/23/2016] [Indexed: 11/20/2022] Open
Abstract
We report here the main characteristics of ‘Colidextribacter massiliensis’ strain Marseille-P3083T (CSURP3083), which was isolated from a human right colon lavage sample.
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31
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"Eggerthella timonensis" gen. nov. isolated from a human stool sample. New Microbes New Infect 2017; 17:41-42. [PMID: 28275441 PMCID: PMC5328910 DOI: 10.1016/j.nmni.2016.11.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2016] [Revised: 11/03/2016] [Accepted: 11/09/2016] [Indexed: 11/20/2022] Open
Abstract
We report the main characteristics of “Eggerthella timonensis” strain Marseille-P3135 which was isolated from a stool sample of a healthy 8-year-old pygmy (Baka) girl.
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32
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' Collinsella phocaeensis' sp. nov., ' Clostridium merdae' sp. nov., ' Sutterella massiliensis' sp. nov., ' Sutturella timonensis' sp. nov., ' Enorma phocaeensis' sp. nov., ' Mailhella massiliensis' gen. nov., sp. nov., ' Mordavella massiliensis' gen. nov., sp. nov. and ' Massiliprevotella massiliensis' gen. nov., sp. nov., 9 new species isolated from fresh stool samples of healthy French patients. New Microbes New Infect 2017; 17:89-95. [PMID: 28409003 PMCID: PMC5382032 DOI: 10.1016/j.nmni.2017.02.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Revised: 02/20/2017] [Accepted: 02/27/2017] [Indexed: 12/22/2022] Open
Abstract
Here we report of summary of the characteristics of 'Collinsella phocaeensis' strain Marseille-P3245T sp. nov., 'Clostridium merdae' strain Marseille-P2953T, 'Sutterella massiliensis' strain Marseille-P2435T sp. nov., 'Sutturella timonensis' strain Marseille-P3282T sp. nov., 'Enorma phocaeensis' Marseille-P3242T sp. nov., 'Mailhella massiliensis' strain Marseille-P3199T gen. nov., sp. nov., 'Mordavella massiliensis' strain Marseille-P3246T sp. nov. and 'Massiliprevotella massiliensis' strain Marseille-P2439T sp. nov. isolated from fresh stool samples of healthy French patients.
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33
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'Urmitella timonensis' gen. nov., sp. nov., 'Blautia marasmi' sp. nov., 'Lachnoclostridium pacaense' sp. nov., 'Bacillus marasmi' sp. nov. and 'Anaerotruncus rubiinfantis' sp. nov., isolated from stool samples of undernourished African children. New Microbes New Infect 2017; 17:84-88. [PMID: 28392924 PMCID: PMC5377003 DOI: 10.1016/j.nmni.2017.02.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Revised: 02/03/2017] [Accepted: 02/27/2017] [Indexed: 12/22/2022] Open
Abstract
We report here the main characteristics of five new species ‘Urmitella timonensis’ strain Marseille-P2918T (CSUR P2918), ‘Blautia marasmi’ strain Marseille-P2377T (CSUR P2377), ‘Lachnoclostridium pacaense’ strain Marseille-P3100T (CSUR P3100), ‘Bacillus marasmi’ strain Marseille-P3556T (CSUR P3556) and ‘Anaerotruncus rubiinfantis’ strain MT15T (CSUR P2276), which were isolated recently from stool samples taken from undernourished children in Niger and Senegal using microbial culturomics.
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34
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' Raoultibacter timonensis' gen. nov., sp. nov. , a new bacterium isolated from the human gut of a Pygmy woman. New Microbes New Infect 2017; 16:45-46. [PMID: 28203374 PMCID: PMC5292757 DOI: 10.1016/j.nmni.2016.12.016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 12/16/2016] [Accepted: 12/23/2016] [Indexed: 10/25/2022] Open
Abstract
We report the main characteristics of a new species 'Raoultibacter timonensis' strain Marseille-P3277 (CSUR P3277), a new member of the genus Raoultibacter, that was isolated from a stool sample of a healthy 11-year-old Pygmy woman.
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35
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‘Gabonibacter timonensis’ sp. nov., a new bacterium isolated from the human gut of a Pygmy woman. New Microbes New Infect 2017; 16:39-40. [PMID: 28179984 PMCID: PMC5279693 DOI: 10.1016/j.nmni.2016.12.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2016] [Revised: 12/16/2016] [Accepted: 12/23/2016] [Indexed: 11/17/2022] Open
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36
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' Actinotignum timonense' sp. nov., a new bacterial species isolated from a human urine sample. New Microbes New Infect 2017; 16:47-48. [PMID: 28203375 PMCID: PMC5294744 DOI: 10.1016/j.nmni.2017.01.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Revised: 01/02/2017] [Accepted: 01/03/2017] [Indexed: 02/04/2023] Open
Abstract
We report here the main characteristics of 'Actinotignum timonense' strain Marseille-P2803T (= CSUR P2803) that was isolated from the urine sample of a 59-year-old man with end-stage renal disease.
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37
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' Ndongobacter massiliensis' gen. nov., sp. nov., a new bacterial genus isolated from a human urine sample after de novo kidney transplantation. New Microbes New Infect 2017; 16:34-36. [PMID: 28138391 PMCID: PMC5257025 DOI: 10.1016/j.nmni.2016.12.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Revised: 12/15/2016] [Accepted: 12/23/2016] [Indexed: 12/02/2022] Open
Abstract
We report the main characteristics of ‘Ndongobacter massiliensis’ strain Marseille-P3170T (= CSUR P3170), which was isolated from the urine sample of a 37-year-old man who had just received a kidney transplant for genetic focal segmental glomerulosclerosis.
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38
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Description of ' Gorbachella massiliensis' gen. nov., sp. nov., ' Fenollaria timonensis' sp. nov., ' Intestinimonas timonensis' sp. nov. and ' Collinsella ihuae' sp. nov. isolated from healthy fresh stools with culturomics. New Microbes New Infect 2017; 16:60-62. [PMID: 28224039 PMCID: PMC5310172 DOI: 10.1016/j.nmni.2017.01.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Revised: 01/05/2017] [Accepted: 01/09/2017] [Indexed: 12/22/2022] Open
Abstract
We report here the main characteristics of ‘Gorbachella massiliensis’ GD7T gen. nov., sp. nov., ‘Fenollaria timonensis’ GD5T sp. nov., ‘Intestinimonas timonensis’ GD4T sp. nov., and ‘Collinsella ihuae’ sp. nov. GD8T isolated from one fresh stool of a French volunteer. We used a bacterial culturomics approach combined with taxono-genomics.
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39
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'Bacillus massiliglaciei', a new bacterial species isolated from Siberian permafrost. New Microbes New Infect 2017; 15:92-93. [PMID: 28053706 PMCID: PMC5196234 DOI: 10.1016/j.nmni.2016.11.020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Revised: 11/14/2016] [Accepted: 11/18/2016] [Indexed: 10/27/2022] Open
Abstract
We describe here the main characteristics of a new species isolated from Siberian permafrost dated around 10 million years. This species was named 'Bacillus massiliglaciei' strain Marseille-P2600T (= CSUR P2600 = DSM 102861).
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40
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‘Congobacterium massiliense’ gen. nov. sp. nov., a new bacterium isolated from the gut of a pygmy (Baka) woman. New Microbes New Infect 2017; 15:63-64. [PMID: 28050249 PMCID: PMC5192236 DOI: 10.1016/j.nmni.2016.11.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Revised: 11/03/2016] [Accepted: 11/09/2016] [Indexed: 11/15/2022] Open
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41
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‘Mobilibacterium massiliense’ gen. nov. and ‘Mobilibacterium timonense’ sp. nov., identified in a human stool specimen. New Microbes New Infect 2017; 15:61-62. [PMID: 28053704 PMCID: PMC5199148 DOI: 10.1016/j.nmni.2016.11.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2016] [Revised: 11/03/2016] [Accepted: 11/09/2016] [Indexed: 11/28/2022] Open
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42
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' Pygmaiobacter massiliensis' sp. nov., a new bacterium isolated from the human gut of a Pygmy woman. New Microbes New Infect 2016; 16:37-38. [PMID: 28179983 PMCID: PMC5284491 DOI: 10.1016/j.nmni.2016.12.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 12/14/2016] [Accepted: 12/14/2016] [Indexed: 10/31/2022] Open
Abstract
This study supports the main characteristics of a new genus 'Pygmaiobacter' and a new species 'Pygmaiobacter massiliensis' strain Marseille-P3336 (CSUR P3336); that was isolated from a stool sample of a healthy 47-year-old Pygmy woman. The Institut Fédératif de Recherche ethics committee, gave approval for this study under the number 09-022. Samples were collected for microbial content description as part of the human microbiome description by culturomics.
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'Intestinibacillus massiliensis' gen. nov., sp. nov., isolated from human left colon. New Microbes New Infect 2016; 17:18-20. [PMID: 28275432 PMCID: PMC5328715 DOI: 10.1016/j.nmni.2016.12.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 12/07/2016] [Accepted: 12/07/2016] [Indexed: 12/21/2022] Open
Abstract
We report here the main characteristics of ‘Intestinibacillus massiliensis’ strain Marseille-P3216T that was isolated from a human left colon wash sample.
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44
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Noncontiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile. New Microbes New Infect 2016; 15:117-127. [PMID: 28070336 PMCID: PMC5219628 DOI: 10.1016/j.nmni.2016.12.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Accepted: 12/08/2016] [Indexed: 12/19/2022] Open
Abstract
Prevotella phocaeensis sp. nov. strain SN19T (= DSM 103364) is a new species isolated from the gut microbiota of patient with colitis due to Clostridium difficile. Strain SN19T is Gram-negative rod-shaped bacteria, strictly anaerobic, nonmotile and non-endospore forming. The predominance fatty acid is hexadecanoic acid. Its 16S rRNA showed a 97.70% sequence identity with its phylogenetically closest species, Prevotella oralis. The genome is 2 922 117 bp long and contains 2486 predicted genes including 56 RNA genes.
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45
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" Corynebacterium urinapleomorphum" sp. nov., isolated from a urine sample of a 2-month-old boy affected by rotavirus gastroenteritis. New Microbes New Infect 2016; 15:21-23. [PMID: 27872750 PMCID: PMC5107731 DOI: 10.1016/j.nmni.2016.09.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Revised: 09/17/2016] [Accepted: 09/21/2016] [Indexed: 02/06/2023] Open
Abstract
We report the main characteristics of "Corynebacterium urinapleomorphum" strain Marseille-P2799T (CSURP2799), isolated from a urine sample from a 2-month-old boy with rotavirus gastroenteritis.
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46
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'Acidaminococcus timonensis' sp. nov. and 'Acidaminococcus massiliensis' sp. nov. isolated from human gut. New Microbes New Infect 2016; 15:46-48. [PMID: 28018604 PMCID: PMC5175988 DOI: 10.1016/j.nmni.2016.11.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 10/27/2016] [Accepted: 11/04/2016] [Indexed: 11/29/2022] Open
Abstract
We report here the main characteristics of 'Acidaminococcus timonensis' strain Marseille-P2764T, isolated from human right colon, and 'Acidaminococcus massiliensis' strain Marseille-P2828T, isolated from human duodenum.
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47
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"Collinsella bouchesdurhonensis" sp. nov., identified in human stool sample. New Microbes New Infect 2016; 17:39-40. [PMID: 28275440 PMCID: PMC5328908 DOI: 10.1016/j.nmni.2016.11.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Revised: 11/03/2016] [Accepted: 11/09/2016] [Indexed: 11/14/2022] Open
Abstract
We report the main characteristics of “Collinsella bouchesdurhonensis” strain Marseille-P3296, which was isolated from a stool sample of a healthy 50-year-old pygmy (Baka) woman.
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48
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‘Urinacoccus massiliensis’ gen. nov. sp. nov., identified in urine sample of a 7-year-old boy hospitalized for dental care under general anaesthesia. New Microbes New Infect 2016; 14:36-7. [PMID: 27668082 PMCID: PMC5024142 DOI: 10.1016/j.nmni.2016.07.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 07/29/2016] [Indexed: 11/26/2022] Open
Abstract
We report here the main characteristics of ‘Urinacoccus massiliensis’ gen. nov. sp. nov., strain FC2 (CSURP1992). This strain was isolated from the urine of an asymptomatic 7-year-old boy.
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"Libanicoccus massiliensis" gen. nov., sp. nov., a new bacterium isolated from a stool sample from a pygmy woman. New Microbes New Infect 2016; 15:40-41. [PMID: 27942387 PMCID: PMC5137330 DOI: 10.1016/j.nmni.2016.10.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Revised: 10/04/2016] [Accepted: 10/14/2016] [Indexed: 10/26/2022] Open
Abstract
This study supports the main characteristics of a new genus "Libanicoccus massiliensis" strain Marseille-P3237 (CSURP3237); a new member of the order Coribacteriaceae that was isolated from a stool sample from a healthy 35-year-old pygmy woman.
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Description of Clostridium phoceensis sp. nov., a new species within the genus Clostridium. New Microbes New Infect 2016; 14:85-92. [PMID: 27818774 PMCID: PMC5078575 DOI: 10.1016/j.nmni.2016.09.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Revised: 09/09/2016] [Accepted: 09/16/2016] [Indexed: 01/15/2023] Open
Abstract
Clostridium phoceensis sp. nov., strain GD3T (= CSUR P1929 = DSM 100334) is the type strain of C. phoceensis sp. nov., a new species within the genus Clostridium. This strain was isolated from the gut microbiota of a 28-year-old healthy French man. C. phoceensis is a Gram-negative, spore-forming, nonmotile, strictly anaerobic bacterium. We describe its complete genome sequence and annotation, together with its phenotypic characteristics.
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