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Wallace RJ, Sasson G, Garnsworthy PC, Tapio I, Gregson E, Bani P, Huhtanen P, Bayat AR, Strozzi F, Biscarini F, Snelling TJ, Saunders N, Potterton SL, Craigon J, Minuti A, Trevisi E, Callegari ML, Cappelli FP, Cabezas-Garcia EH, Vilkki J, Pinares-Patino C, Fliegerová KO, Mrázek J, Sechovcová H, Kopečný J, Bonin A, Boyer F, Taberlet P, Kokou F, Halperin E, Williams JL, Shingfield KJ, Mizrahi I. A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions. Sci Adv 2019; 5:eaav8391. [PMID: 31281883 PMCID: PMC6609165 DOI: 10.1126/sciadv.aav8391] [Citation(s) in RCA: 169] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Accepted: 05/30/2019] [Indexed: 05/19/2023]
Abstract
A 1000-cow study across four European countries was undertaken to understand to what extent ruminant microbiomes can be controlled by the host animal and to identify characteristics of the host rumen microbiome axis that determine productivity and methane emissions. A core rumen microbiome, phylogenetically linked and with a preserved hierarchical structure, was identified. A 39-member subset of the core formed hubs in co-occurrence networks linking microbiome structure to host genetics and phenotype (methane emissions, rumen and blood metabolites, and milk production efficiency). These phenotypes can be predicted from the core microbiome using machine learning algorithms. The heritable core microbes, therefore, present primary targets for rumen manipulation toward sustainable and environmentally friendly agriculture.
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Affiliation(s)
- R. John Wallace
- The Rowett Institute, University of Aberdeen, Ashgrove Road West, Aberdeen AB25 2ZD, UK
- Corresponding author. (R.J.W.); (I.M.)
| | - Goor Sasson
- Department of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Be’er Sheva, Israel
| | - Philip C. Garnsworthy
- University of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Ilma Tapio
- Production Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland
| | - Emma Gregson
- University of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Paolo Bani
- Department of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
| | - Pekka Huhtanen
- Swedish University of Agricultural Sciences, Department of Agriculture for Northern Sweden, S-90 183 Umeå, Sweden
| | - Ali R. Bayat
- Production Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland
| | | | | | - Timothy J. Snelling
- The Rowett Institute, University of Aberdeen, Ashgrove Road West, Aberdeen AB25 2ZD, UK
| | - Neil Saunders
- University of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Sarah L. Potterton
- University of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - James Craigon
- University of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Andrea Minuti
- Department of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
| | - Erminio Trevisi
- Department of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
| | - Maria L. Callegari
- Institute of Microbiology, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
| | - Fiorenzo Piccioli Cappelli
- Department of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
| | - Edward H. Cabezas-Garcia
- Swedish University of Agricultural Sciences, Department of Agriculture for Northern Sweden, S-90 183 Umeå, Sweden
| | - Johanna Vilkki
- Production Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland
| | - Cesar Pinares-Patino
- Production Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland
| | - Kateřina O. Fliegerová
- Institute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic
| | - Jakub Mrázek
- Institute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic
| | - Hana Sechovcová
- Institute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic
| | - Jan Kopečný
- Institute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic
| | - Aurélie Bonin
- Laboratoire d'Ecologie Alpine, Domaine Universitaire de St Martin d'Hères CNRS, 38041 Grenoble, France
| | - Frédéric Boyer
- Laboratoire d'Ecologie Alpine, Domaine Universitaire de St Martin d'Hères CNRS, 38041 Grenoble, France
| | - Pierre Taberlet
- Laboratoire d'Ecologie Alpine, Domaine Universitaire de St Martin d'Hères CNRS, 38041 Grenoble, France
| | - Fotini Kokou
- Department of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Be’er Sheva, Israel
| | - Eran Halperin
- Departments of Computer Science, Computational Medicine, Human Genetics, and Anesthesiology, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | | | - Kevin J. Shingfield
- Production Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland
| | - Itzhak Mizrahi
- Department of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Be’er Sheva, Israel
- Corresponding author. (R.J.W.); (I.M.)
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Calamari L, Piccioli Cappelli F, Caré S, Bertin G. Effect of Se source and dose on selenomethionine and selenocysteine levels in blood and plasma of mature horses. Italian Journal of Animal Science 2016. [DOI: 10.4081/ijas.2009.s2.694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Luigi Calamari
- 1Istituto di Zootecnica, Università Cattolica del S., Cuore, Italy
| | | | - Sara Caré
- 1Istituto di Zootecnica, Università Cattolica del S., Cuore, Italy
| | - Gérard Bertin
- Alltech France, EU Regulatory Affairs Department, Levallois-Perret, France
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Trevisi E, Grossi P, Cappelli FP, Cogrossi S, Bertoni G. Attenuation of inflammatory response phenomena in periparturient dairy cows by the administration of an ω3 rumen protected supplement containing vitamin E. Italian Journal of Animal Science 2016. [DOI: 10.4081/ijas.2011.e61] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Erminio Trevisi
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Paolo Grossi
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | | | - Simone Cogrossi
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Giuseppe Bertoni
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Piacenza, Italy
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Piccioli Cappelli F, Grazia Maianti M, Ferrandi S, Calamari L, Bani P. Effect of diets with different content of starch and protein fed to dairy cows in early lactation on milk yield and traits. Italian Journal of Animal Science 2009. [DOI: 10.4081/ijas.2009.s2.319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
| | - Maria Grazia Maianti
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Italy, Piacenza, Italy
| | - Silvia Ferrandi
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Italy, Piacenza, Italy
| | - Luigi Calamari
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Italy, Piacenza, Italy
| | - Paolo Bani
- Istituto di Zootecnica, Università Cattolica del Sacro Cuore, Italy, Piacenza, Italy
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Cappelli FP, Seal CJ, Parker DS. Glucose and [13C]leucine metabolism by the portal-drained viscera of sheep fed on dried grass with acute intravenous and intraduodenal infusions of glucose. Br J Nutr 1997; 78:931-46. [PMID: 9497444 DOI: 10.1079/bjn19970210] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The effect of exogenous glucose supply by either intrajugular (IJG) or intraduodenal (IDG) infusion at 2.0 mg glucose/kg body weight per min was investigated in four wether sheep (average weight 44 (SD 4) kg) chronically catheterized in the carotid artery and portal veins. Sheep were fed on a dried grass pellet diet hourly using continuous belt feeders. Whole-body glucose irreversible loss (IL) rate, measured with [6-3H]glucose, was increased by 0.5 and 0.8 of exogenous supply for IJG and IDG infusions respectively. Portal glucose utilization, measured by isotope dilution across the portal-drained viscera, was unaffected by additional glucose regardless of the route of glucose supply (P = 0.76 for control v. glucose infusions) and was a constant proportion of glucose IL (0.28) for all treatments. Portal plasma flow was higher during IDG infusions compared with IJG infusions (1.65 v. 1.44 litres/min, P = 0.055). Circulating total free amino acid concentrations fell during glucose infusions (2146, 1808 and 1683 mumol/l for control, IJG and IDG treatments respectively, P = 0.067 for treatment effect) but net portal absorption was not affected by increased glucose supply. Recovery in the portal vein of [1-13C]leucine infused into the duodenum averaged 0.65 and was not affected by increasing glucose supply to the gut tissues. The results show that glucose utilization by gut tissues is responsive to changes in both vascular and luminal glucose supply. The effects of changing gut tissue use of glucose and increased whole body glucose IL on metabolism of nutrients is discussed.
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Affiliation(s)
- F P Cappelli
- Department of Biological and Nutritional Sciences, University of Newcastle, Newcastle upon Tyne
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