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Sistonen P, Nevanlinna H, Virtaranta-Knowles K, Tuominen I, Pirkola A, Green C, Tippett P. WES, a ‘New’ Infrequent Blood Group Antigen in Finns. Vox Sang 2017. [DOI: 10.1159/000461623] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Gunnelius L, Tuominen I, Rantamäki S, Pollari M, Ruotsalainen V, Tyystjärvi E, Tyystjärvi T. SigC sigma factor is involved in acclimation to low inorganic carbon at high temperature in Synechocystis sp. PCC 6803. Microbiology (Reading) 2009; 156:220-229. [PMID: 19729407 DOI: 10.1099/mic.0.032565-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Inactivation of the sigC gene (sll0184), encoding the group 2 sigma factor SigC, leads to a heat-sensitive phenotype of Synechocystis sp. PCC 6803. Cells of the DeltasigC strain grew poorly at 43 degrees C at pH 7.5 under ambient CO(2) conditions. Addition of inorganic carbon in the form of 3 % CO(2) or use of an alkaline growth medium (pH 8.3) restored the growth of the DeltasigC strain at 43 degrees C. These treatments compensate for the low concentration of inorganic carbon at high temperature. However, addition of organic carbon as glucose, pyruvate, succinate or 2-oxoglutarate did not restore growth of the DeltasigC strain at 43 degrees C. In the control strain, the amount of the SigC factor diminished after prolonged incubation at 43 degrees C if the pH of the growth medium was 7.5 or 6.7. Under alkaline conditions, the amount of the SigC factor remained constant at 43 degrees C and cells of the control strain grew better than at pH 7.5 or pH 6.7. The pH dependence of high-temperature growth was associated with changes in photosynthetic activity, indicating that the SigC factor is involved in adjustment of photosynthesis according to the amount of available inorganic carbon. Our results indicate that acclimation to low inorganic carbon is a part of acclimation to prolonged high temperature and that the SigC factor has a central role in this acclimation.
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Affiliation(s)
- Liisa Gunnelius
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
| | - Ilona Tuominen
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
| | - Susanne Rantamäki
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
| | - Maija Pollari
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
| | - Virpi Ruotsalainen
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
| | - Esa Tyystjärvi
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
| | - Taina Tyystjärvi
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
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Pollari M, Gunnelius L, Tuominen I, Ruotsalainen V, Tyystjärvi E, Salminen T, Tyystjärvi T. Characterization of single and double inactivation strains reveals new physiological roles for group 2 sigma factors in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol 2008; 147:1994-2005. [PMID: 18539776 PMCID: PMC2492616 DOI: 10.1104/pp.108.122713] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2008] [Accepted: 05/28/2008] [Indexed: 05/20/2023]
Abstract
Cyanobacteria are eubacteria that perform oxygenic photosynthesis like plants. The initiation of transcription, mediated by the RNA polymerase holoenzyme, is the main determinant of gene regulation in eubacteria. The sigma factor of the RNA polymerase holoenzyme is responsible for the recognition of a promoter sequence. In the cyanobacterium Synechocystis sp. PCC 6803, the primary sigma factor, SigA, is essential for cell viability. The SigB, SigC, SigD, and SigE factors show significant sequence similarity with the SigA factor but are nonessential. In this study, we have used homology modeling to construct a three-dimensional model of Synechocystis RNA polymerase holoenzyme and all group 1 and 2 sigma factors. According to the models, the overall three-dimensional structures of group 1 and 2 sigma factors are similar, the SigB and SigD factors being the most similar ones. In addition, we have constructed a complete set of group 2 sigma factor double inactivation strains, DeltasigBC, DeltasigBD, DeltasigBE, DeltasigCD, DeltasigCE, and DeltasigDE. All double mutants grow well under standard conditions, but differences are observed in stress conditions. The transition from lag phase to exponential growth is slow in the DeltasigBD strain, and all strains lacking the SigD factor were found to be sensitive to bright light. Furthermore, all group 2 sigma factors were found to be involved in acclimation to salt- or sorbitol-induced osmotic stresses.
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Affiliation(s)
- Maija Pollari
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
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Tuominen I, Pollari M, Aguirre von Wobeser E, Tyystjärvi E, Ibelings BW, Matthijs HCP, Tyystjärvi T. Sigma factor SigC is required for heat acclimation of the cyanobacterium Synechocystis sp. strain PCC 6803. FEBS Lett 2007; 582:346-50. [PMID: 18166156 DOI: 10.1016/j.febslet.2007.12.030] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2007] [Revised: 12/14/2007] [Accepted: 12/18/2007] [Indexed: 11/28/2022]
Abstract
The role of the primary-like sigma factor SigC was studied in Synechocystis. Under high temperature stress (48 degrees C) the DeltasigC inactivation strain showed a lower survival rate than the control strain. The DeltasigC strain grew poorly at 43 degrees C in liquid cultures under normal air. However, change to 3% CO(2) enhanced growth of DeltasigC at 43 degrees C. Differences in expression of many genes related to the carbon concentrating mechanisms between the control and the DeltasigC strain were recorded with a genome-wide DNA microarray. We suggest that low solubility of CO2 at high temperature is one of the factors contributing to the poor thermotolerance of the DeltasigC strain.
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Affiliation(s)
- Ilona Tuominen
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, Turku, Finland
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Tuominen I, Pollari M, Tyystjärvi E, Tyystjärvi T. The SigBσfactor mediates high-temperature responses in the cyanobacteriumSynechocystissp. PCC6803. FEBS Lett 2005; 580:319-23. [PMID: 16376888 DOI: 10.1016/j.febslet.2005.11.082] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2005] [Revised: 11/25/2005] [Accepted: 11/29/2005] [Indexed: 11/28/2022]
Abstract
The sigma factors of RNA polymerase play central roles when bacteria adapt to different environmental conditions. We studied heat-shock responses in the cyanobacterium Synechocystis sp. PCC6803 using the sigma factor inactivation strains deltasigB, deltasigD and deltasigBD. The SigB factor was found to be important for short-term heat-shock responses and acquired thermotolerance. The normal high-temperature induction of the hspA gene depended on the SigB factor. The SigD sigma factor had a role in high-temperature responses as well, and the double inactivation strain deltasigBD grew more slowly at 43 degrees C than the deltasigB and deltasigD strains.
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Affiliation(s)
- Ilona Tuominen
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FI-20014 Turku, Finland
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Hakala M, Tuominen I, Keränen M, Tyystjärvi T, Tyystjärvi E. Evidence for the role of the oxygen-evolving manganese complex in photoinhibition of Photosystem II. Biochim Biophys Acta 2005; 1706:68-80. [PMID: 15620366 DOI: 10.1016/j.bbabio.2004.09.001] [Citation(s) in RCA: 248] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2004] [Accepted: 09/01/2004] [Indexed: 11/28/2022]
Abstract
Photoinhibition of PSII occurs at the same quantum efficiency from very low to very high light, which raises a question about how important is the rate of photosynthetic electron transfer in photoinhibition. We modulated electron transfer rate and light intensity independently of each other in lincomycin-treated pea leaves and in isolated thylakoids, in order to elucidate the specific effects of light and PSII electron transport on photoinhibition. Major changes in the rate of electron transport caused only small changes in the rate of photoinhibition, suggesting the existence of a significant photoinhibitory pathway that contains an electron-transfer-independent phase. We compared the action spectrum of photoinhibition with absorption spectra of PSII components that could function as photoreceptors of the electron-transfer-independent phase of photoinhibition and found that the absorption spectra of Mn(III) and Mn(IV) compounds resemble the action spectrum of photoinhibition, showing a steep decrease from UV-C to blue light and a low visible-light tail. Our results show that the release of a Mn ion to the thylakoid lumen is the earliest detectable step of both UV- and visible-light-induced photoinhibition. After Mn release from the oxygen-evolving complex, oxidative damage to the PSII reaction center occurs because the Mn-depleted oxygen-evolving complex cannot reduce P680+ normally.
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Affiliation(s)
- Marja Hakala
- Department of Biology, Laboratory of Plant Physiology and Molecular Biology, Biocity A, University of Turku, FI-20014 University of Turku, Finland
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Tuominen I, Tyystjärvi E, Tyystjärvi T. Expression of primary sigma factor (PSF) and PSF-like sigma factors in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 2003; 185:1116-9. [PMID: 12533490 PMCID: PMC142826 DOI: 10.1128/jb.185.3.1116-1119.2003] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Large amounts of sigA mRNA, encoding the primary sigma factor (PSF) in Synechocystis sp. strain PCC 6803, accumulated under standard growth conditions, while stress conditions like heat or high salinity led to a rapid decrease in sigA mRNA content. The sigB, sigC, sigD, and sigE genes, encoding PSF-like sigma factors, were under strict physiological control.
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Affiliation(s)
- Ilona Tuominen
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FIN-20014 Turku, Finland
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Tyystjärvi T, Tuominen I, Herranen M, Aro EM, Tyystjärvi E. Action spectrum of psbA gene transcription is similar to that of photoinhibition in Synechocystis sp. PCC 6803. FEBS Lett 2002; 516:167-71. [PMID: 11959126 DOI: 10.1016/s0014-5793(02)02537-1] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The photosystem II (PSII) reaction center protein D1 undergoes rapid light-dependent turnover, which is caused by photoinhibition. To identify the photoreceptor(s) involved in the light-dependent expression of the psbA gene encoding the D1 protein, we determined the action spectra of psbA transcription, PSII activity, photosynthesis and photoinhibition in Synechocystis sp. PCC 6803. In accordance with its phycobilisome antenna, PSII showed the highest activity in the spectral region from yellow to red and only low activity in the ultraviolet-A (UV-A) to green region. Photoinhibition, in turn, was fastest in UV-A to violet light and a minor peak was found in the orange region. The action spectrum of psbA transcription resembled closely that of photoinhibition, suggesting that photoinhibition creates a signal for up-regulation of the psbA gene.
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Affiliation(s)
- Taina Tyystjärvi
- Plant Physiology and Molecular Biology, University of Turku, FIN-20014, Turku, Finland.
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Tuominen I, Vesaluoma M, Teppo AM, Grönhagen-Riska C, Tervo T. Soluble Fas and Fas ligand in human tear fluid after photorefractive keratectomy. Br J Ophthalmol 1999; 83:1360-3. [PMID: 10574814 PMCID: PMC1722885 DOI: 10.1136/bjo.83.12.1360] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
BACKGROUND/AIMS The Fas-Fas ligand system is thought to be involved in stromal cell apoptosis after corneal wounding. The aim was to measure changes in human tear fluid levels of soluble Fas (sFas) and Fas ligand (sFasL) following myopic photorefractive keratectomy (PRK). METHODS Tear samples of 59 patients were collected preoperatively, and 1 or 2 days after PRK. Tear fluid sFas or sFasL concentrations were determined using sandwich ELISAs. Subsequently, tear flow corrected concentrations (releases) were calculated to compensate for the postoperative tear hypersecretion. RESULTS The preoperative tear fluid flows (TFF) were 6.4 (1.7) microl/min (mean (SEM)) in sFas group (n = 18), and 7.5 (1.5) microl/min in sFasL group (n = 39). Postoperatively TFFs increased to 37.9 (10.9) microl/min (p = 0.003) and 58.3 (7.0) microl/min (p = 0.000), respectively. The mean preoperative sFas concentration (24.4 (11.6) U/ml) decreased to 9.7 (4.1) U/ml (p = 0.001) postoperatively, and the mean sFasL concentration (299.1 (28.8) ng/l) to 118.7 (15.9) ng/l (p = 0.000). However, the release of both substances increased significantly: sFas from 87.3 (29.4) mU/min to 229.4 (82.9) mU/min (p = 0.002) and sFasL from 1620.6 (226.4) fg/min to 4777.1 (596.1) fg/min (p = 0.000). CONCLUSIONS Both sFas and sFasL are normal constituents of human tears. Despite a decrease in concentrations related to reflex tears, the release of sFas and sFasL increases significantly after excimer laser photorefractive keratectomy, which suggests that they are involved in corneal healing after PRK in humans.
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Affiliation(s)
- I Tuominen
- Helsinki University Eye Hospital, Helsinki, Finland
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Tuominen I, Rüdiger G, Brandenburg A. Observational Constraints for Solar-Type Dynamos. ACTA ACUST UNITED AC 1988. [DOI: 10.1007/978-94-009-2951-7_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
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Abstract
A previously unrecognized infrequent blood group antigen WES occurs with a frequency of 0.56% in the Finnish population, but has an ethnically restricted distribution. Apart from Finns it was found only in 2 donors, most likely of African origin, among 4,655 people tested who represented many different ethnic groups. WES is shown to be a dominant autosomally inherited character different from previously published infrequent antigens. The data allow exclusion from almost all established blood group systems. The WES antigen is destroyed by enzymes alpha-chymotrypsin and pronase. It is also present in plasma of WES+ individuals. Evidence suggests that the soluble form of the antigen is a high molecular weight protein constituent of plasma. Unlike many other antigens present on red cells as well as in plasma, the WES antigen is well developed on red cells of neonates and can also be found in cord serum.
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