Are Redox-active Centers Bridged by Saturated Flexible Linkers Systematically Electrochemically Independent?

The extent to which electrophores covalently bridged by a saturated linker are electrochemically independent was investigated considering the charge/spin duality of the electron and functionality of the electrophore as a spin carrier upon reduction. By combining computational modeling with electrochemical experiments, we investigated the mechanism by which tethered electrophores react together within 4,4'-oligo[n]methylene-bipyridinium assemblies (with n = 2 to 5). We show that native dicationic electrophores (redox state Z = +2) are folded prior to electron injection into the system, allowing the emergence of supra-molecular orbitals (supra-MOs) likely to support the process of the reductive s bond formation giving cyclomers. Indeed, for Z = +2, London Dispersion (LD) forces contribute to flatten the potential energy surface such that all-trans and folded conformers are approximately isoenergetic. Then, upon one-electron injection, for radical cations (Z = +1), LD forces significantly stabilize the folded conformers, except for the ethylene derivative deprived of supra-MOs. For radical cations equipped with supra-MOs, the unpaired electron is delocalized over both heterocycles through space. Cyclomer completion (Z = 0) upon the second electron transfer occurs according to the inversion of redox potentials. This mechanism explains why intramolecular reactivity is favored and why pyridinium electrophores are not independent.

Designing Powerful Biindole-Based Inherently Chiral Selectors: Enhancing Enantiodiscrimination by Core Functionalization with Additional Coordination Elements

Among inherently chiral selectors of axial stereogenicity, usually resulting in very good enantiodiscrimination performances, the biindole-based family has the additional advantage of very easy functionalization of the two nitrogen atoms with a variety of substituents with desirable properties. Aiming to evaluate the possibility of exploiting such feature to enhance the enantiodiscrimination ability of the archetype structure, a series of three inherently chiral monomers were designed and synthesized, characterised by a 2,2'-biindole atropisomeric core conjugated to bithiophene wings enabling fast and regular electrooligomerization, and functionalised at the nitrogen atoms with an ethyl, a methoxyethyl, or a hydroxyethyl substituent. Nitrogen alkylation was also exploited to obtain for the first time the chemical resolution of the biindole selectors without employing chiral HPLC. The enantiodiscrimination ability of the selector series was comparatively evaluated in proof-of-concept chiral voltammetry experiments with a "benchmark" chiral ferrocenyl probe as well as with chiral non-steroidal anti-inflammatory drugs naproxen and ketoprofen. The large enantiomer potential differences for all probes increased in the ethyl < methoxyethyl ≪ hydroxyethyl sequence of selector substituents, supporting our assumption on the beneficial role of an additional coordination element. The powerful hydroxyethyl selector was also applied to ketoprofen in a commercial drug matrix.

Pencil graphite electrodes for in-situ spectroelectrochemical sensing of reaction intermediates and products in organic solvents

BACKGROUND

Spectroelectrochemistry (SEC) is a valuable analytical tool providing insights to reaction mechanisms and the structure of species involved in charge transfer reactions. Most of commercial SEC setups are based on platinum working electrodes where the adsorption of species involved in reactions often complicates their analysis.

RESULTS

In this work, we employ an array of pencil graphite rods as an optically transparent working electrode in a custom-made air-tight thin-layer cell suitable for the SEC analysis performed here in acetonitrile as a representative non-aqueous solvent. The functionality of the device was demonstrated by UV-Vis SEC sensing of charge transfer reactions of ruthenium acetylacetonate, ferrocene and ethylviologen dibromide redox probes performed employing the cyclic voltammetry. The SEC response obtained for all three probes confirmed no adsorption and the absence of oxygen in the cell. Furthermore, we have developed and utilized finite element method numerical simulations considering charge transfer reactions coupled with the diffusional mass transport to model the cyclic voltammetric response and the reaction conversion in the thin-layer SEC cell.

SIGNIFICANCE

Our work paves the way for easy-to-assemble customized air-tight adsorption-free SEC devices with the manufacturing costs well below those of commercially available platforms. Developed computational approaches have the predictive power for optimizing reaction conditions and the geometry of the SEC cell.

Spectroelectrochemical sensing of reaction intermediates and products in an affordable fully 3D printed device

Recent advances in fused deposition modelling 3D printing (FDM 3DP) and synthesis of printable electrically conductive materials enabled the manufacture of customized electrodes and electrochemical devices by this technique. The past couple of years have seen a boom in applying approaches of FDM 3DP in the realm of spectroelectrochemistry (SEC). Despite significant progress, reported designs of SEC devices still rely on conventionally manufactured optical components such as quartz windows and cuvettes. To bridge this technological gap, in this work we apply bi-material FDM 3DP combining electrically conductive and optically translucent filaments to manufacture working electrodes and cells, constituting a fully integrated microfluidic platform for transmission absorption UV-Vis SEC measurements. The cell design enables de-aeration of samples and their convenient handling and analysis. Employing cyclic voltammetric measurements with ruthenium(III) acetylacetonate, ethylviologen dibromide and ferrocenemethanol redox-active probes as model analytes, we demonstrate that the presented platform allows SEC sensing of reactants, intermediates and products of charge transfer reactions, including the inspection of their long-term stability. Approaches developed and presented in this work pave the way for manufacturing customized SEC devices with dramatically reduced costs compared to currently available commercial platforms.

Self-Assembled Monolayers of Molecular Conductors with Terpyridine-Metal Redox Switching Elements: A Combined AFM, STM and Electrochemical Study

Self-assembled monolayers (SAMs) of terpyridine-based transition metal (ruthenium and osmium) complexes, anchored to gold substrate via tripodal anchoring groups, have been investigated as possible redox switching elements for molecular electronics. An electrochemical study was complemented by atomic force microscopy (AFM) and scanning tunneling microscopy (STM) methods. STM was used for determination of the SAM conductance values, and computation of the attenuation factor β from tunneling current-distance curves. We have shown that SAMs of Os-tripod molecules contain larger adlayer structures compared with SAMs of Ru-tripod molecules, which are characterized by a large number of almost evenly distributed small islands. Furthermore, upon cyclic voltammetric experimentation, Os-tripod films rearrange to form a smaller number of even larger islands, reminiscent of the Ostwald ripening process. Os-tripod SAMs displayed a higher surface concentration of molecules and lower conductance compared with Ru-tripod SAMs. The attenuation factor of Os-tripod films changed dramatically, upon electrochemical cycling, to a higher value. These observations are in accordance with previously reported electron transfer kinetics studies.

On the Supra-LUMO Interaction: Case Study of a Sudden Change of Electronic Structure as a Functional Emergence

The synergistic functioning of redox-active components that emerges from prototypical 2,2'-di(N-methylpyrid-4-ylium)-1,1'-biphenyl is described. Interestingly, even if a trans conformation of the native assembly is expected, due to electrostatic repulsion between cationic pyridinium units, we demonstrate that cis conformation is equally energy-stabilized on account of a peculiar LUMO (SupLUMO) that develops through space, encompassing the two pyridiniums in a single, made-in-one-piece, electronic entity (superelectrophoric behavior). This SupLUMO emergence, with the cis species as superelectrophore embodiment, originates in a sudden change of electronic structure. This finding is substantiated by insights from solid state (single-crystal X-ray diffraction) and solution (NOE NMR and UV-vis-NIR spectroelectrochemistry) studies, combined with electronic structure computations. Electrochemistry shows that electron transfers are so strongly correlated that two-electron reduction manifests itself as a single-step process with a large potential inversion consistent with inner creation of a carbon-carbon bond (digital simulation). Besides, absence of reductive formation of dimers is a further indication of a preferential intramolecular reactivity determined by the SupLUMO interaction (cis isomer pre-organization). The redox-gated covalent bond, serving as electron reservoir, was studied via atropisomerism of the reduction product (VT NMR study). The overall picture derived from this in-depth study of 2,2'-di(N-methylpyrid-4-ylium)-1,1'-biphenyl proves that trans and cis species are worth considered as intrinsically sharply different, that is, as doubly-electrophoric and singly-superelectrophoric switchable assemblies, beyond conformational isomerism. Most importantly, the through-space-mediated SupLUMO may come in complement of other weak interactions encountered in Supramolecular Chemistry as a tool for the design of electroactive architectures.

Environmental Control of Single-Molecule Junction Evolution and Conductance: A Case Study of Expanded Pyridinium Wiring

Environmental control of single-molecule junction evolution and conductance was demonstrated for expanded pyridinium molecules by scanning tunneling microscopy break junction method and interpreted by quantum transport calculations including solvent molecules explicitly. Fully extended and highly conducting molecular junctions prevail in water environment as opposed to short and less conducting junctions formed in non-solvating mesitylene. A theoretical approach correctly models single-molecule conductance values considering the experimental junction length. Most pronounced difference in the molecular junction formation and conductance was identified for a molecule with the highest stabilization energy on the gold substrate confirming the importance of molecule-electrode interactions. Presented concept of tuning conductance through molecule-electrode interactions in the solvent-driven junctions can be used in the development of new molecular electronic devices.

Tuning the contact conductance of anchoring groups in single molecule junctions by molecular design

A tetraphenylmethane tripod functionalized with three thiol moieties in the para position can serve as a supporting platform for functional molecular electronic elements. A combined experimental scanning tunneling microscopy break junction technique with theoretical approaches based on density functional theory and non-equilibrium Green's function formalism was used for detailed charge transport analysis to find configurations, geometries and charge transport pathways in the molecular junctions of single molecule oligo-1,4-phenylene conductors containing this tripodal anchoring group. The effect of molecular length (n = 1 to 4 repeating phenylene units) on the charge transport properties and junction configurations is addressed. The number of covalent attachments between the electrode and the tripodal platform changes with n affecting the contact conductance of the junction. The longest homologue n = 4 adopts an upright configuration with all three para thiolate moieties of the tripod attached to the gold electrode. The contact conductance of the tetraphenylmethane tripod substituted by thiols in the para position is higher than that substituted in the meta position. Such molecular arrangement is highly conducting and allows well-defined directional positioning of a variety of functional groups.

Probabilistic mapping of single molecule junction configurations as a tool to achieve the desired geometry of asymmetric tripodal molecules

Four molecules containing identical tripodal anchors and p-oligophenylene molecular wires of increasing length were used to demonstrate tuning of the asymmetric molecular junction to the desired geometry by probabilistic mapping of single molecule junction configurations in a scanning tunnelling microscopy break junction experiment.

Adsorption of Expanded Pyridinium Molecules at the Electrified Interface and Its Effect on the Electron-Transfer Process

Adsorption properties of a series of redox-active expanded pyridinium molecules were studied at an electrified interface by cyclic and alternating current voltammetry methods. It was shown that the adsorbed state can sufficiently block N-pyramidalization of the pyridinium redox center of 2',6'-diphenyl-[4,1':4',4''-terpyridin]-1'-ium tetrafluoroborate (2), leading to a change of the mechanism from a single two-electron-transfer process to stepwise transfer of two electrons. Chemically locked molecules 1, 9-(pyridin-4-yl)benzo[ c]benzo[1,2]quinolizino[3,4,5,6- ija][1,6]naphthyridin-15-ium tetrafluoroborate (ring fusion), and 3, 3,5-dimethyl-2',6'-diphenyl-[4,1':4',4''-terpyridin]-1'-ium tetrafluoroborate (steric hindrance) do not enable N-pyramidalization of the redox center upon electron transfer (ET) and serve as references. It was shown that 1 follows Langmuir-type adsorption around a potential of zero charge and that 1-3 form a close-packed film with some repulsive interactions between individual molecules at potentials where ET takes place. It has been suggested that all three molecules lie flat on the electrode surface, with the lowest free energy of adsorption found for 2. Maximum surface concentration Γ* equal to (1.4 ± 0.1) × 10^-10 mol·cm^-2 was found for 1, (1.5 ± 0.1) × 10^-10 mol·cm^-2 for 2, and (1.6 ± 0.1) × 10^-10 mol·cm^-2 for 3. These findings will help to clarify the role of molecular contacts with conducting substrate in the single-molecule electron-transport measurements of 1-3 during the metal-molecule-metal junction formation process.

Atrazine-based self-assembled monolayers and their interaction with anti-atrazine antibody: building of an immunosensor

As a part of our objective to build an immunosensor for the detection of the pesticide atrazine (ATZ) in environmental samples, we studied the self-assembling process of the disulfide derivative of the pesticide atrazine on a gold substrate. Atrazine-based self-assembled monolayers were characterized by ellipsometry, scanning tunneling microscopy, polarization-modulation infrared reflection-absorption spectroscopy (PM IRRAS), X-ray photoelectron spectroscopy and quartz crystal microbalance (QCM) measurements. Two different time constants for the adsorption process were observed, depending on the experimental method used. The QCM data reflect adsorption kinetics of the original disulfide compound, whereas ellipsometry and ex situ PM IRRAS refer to the formation of thiolate (ATZS) monolayers. In situ QCM data demonstrated the suitability of such monolayers for the detection of atrazine in aqueous samples. Exposure of the ATZS sensing surface to an anti-atrazine antibody (anti-ATZ IgG) resulted in complete coverage of the surface by antibody, whereas approximately half of the antibody molecules were displaced from the QCM sensor surface by further addition of atrazine into the solution.

Single-Molecule Conductance in a Series of Extended Viologen Molecules

Single-molecule conductance in a series of extended viologen molecules was measured at room temperature using a gold-molecule-gold scanning tunneling microscopy break junction arrangement. Conductance values for individual molecules change from 4.8 ± 1.2 nS for the shortest compound to 2.9 ± 1.0 nS for the compound with six repeating units and length of 11 nm. The latter value is almost 3 orders of magnitude higher than that reported for all-carbon-based aromatic molecular wires of comparable length. On the basis of the length of the molecules, an attenuation factor of only 0.06 ± 0.004 nm(-1) (0.006 ± 0.0004 Å(-1)) was obtained. To the best of our knowledge, this is the smallest value reported for the conductance attenuation in a series of molecular wires.

The influence of the host–guest interaction on the oxidation of natural flavonoid dyes

The influence of the molecular cavity protection on degradation processes of bioorganic compounds quercetin and luteolin used as the original dyes in old tapestries was studied. The degradation processes were studied by electrochemical methods in aqueous media. The products of the exhaustive electrolysis were separated and identified by GC-MS analysis. Cyclic voltammetry characteristics indicate that the inclusion complex is formed. The inclusion affects the redox potentials of both oxidation waves related to the different dissociation forms of the flavonoid molecule. It was shown that decomposition products formed by the oxidation of quercetin are stabilized in the cavity of β-cyclodextrin, including the main oxidation product 2(3′,4′-dihydroxybenzoyl)-2,4,6-trihydroxybenzofuran-3(2H)-one. The formation of the 1:1 inclusion complex of luteolin with β-cyclodextrin is supported by the enhancement of fluorescence intensity. In the case of quercetin, a decrease of fluorescence intensity occurs when 1:1 inclusion complex with β-cyclodextrin is formed.

Nanoshaving of bovine serum albumin films adsorbed on monocrystalline surfaces and interfaces

We apply the ex situ and in situ atomic force microscopy (AFM) nanoshaving technique to investigate the bovine serum albumin (BSA) films on Au(111) and highly oriented pyrolytic graphite (HOPG) surfaces. The both substrates were found to support the BSA films. The section analysis performed before and after the AFM nanoshaving allowed the determination of the film thickness. On Au(111) surface, both ex situ and in situ nanoshaving revealed that the film is formed by strongly denatured BSA molecules, with the average thickness 2.3 ± 0.2 and 2.0 ± 0.2 nm, respectively. On the other hand, the HOPG substrate was found to support less denatured BSA films, with the average film thickness 4.7 ± 0.3 and 5.2 ± 0.3 nm, based on the ex situ and in situ measurements, respectively.

On the adsorption of extended viologens at the electrode|electrolyte interface

Extended viologens represent a group of organic molecules intended to be used as molecular wires in molecular electronic devices. Adsorption properties of a novel series of extended viologen molecules were studied at the mercury electrode|electrolyte interface. These compounds form compact monolayers around the potential of zero charge with a constant differential capacitance value of 2.5 ± 0.2 μF cm(-2) independent of temperature, length of the molecule, and its bulk concentration. At more negative potentials their reduction in the adsorbed state takes place. We showed that the adsorption process is diffusion controlled and time needed to fully cover the electrode surface is independent of the electrode potential. A modified Koryta equation was employed for the calculation of the surface concentration of the adsorbates leading to the value of 5.3 × 10(-11) mol cm(-2) for the shortest wire and to 1.6 × 10(-11) mol cm(-2) for the longest one. Based on the space filling model and the differential capacitance value in the compact film region, it was postulated that these molecules lay flat on the electrode surface.

Oxidation pathways of natural dye hematoxylin in aqueous solution

The oxidation mechanism of hematoxylin was studied in phosphate buffers and 0.1 M KCl by cyclic voltammetry and UV-Vis spectroscopy under deaerated conditions. The redox potential of hematoxylin in buffered solution strongly depends on pH. A two electron oxidation is preceded by deprotonation. The homogeneous rate of deprotonation process of hematoxylin in 0.1 M phosphate buffer is kd = (2.5 ± 0.1) × 104 s–1. The cyclic voltammetry under unbuffered conditions shows the distribution of various dissociation forms of hematoxylin. The dissociation constants pK1 = 4.7 ± 0.2 and pK2 = 9.6 ± 0.1 were determined using UV-Vis spectroscopy. The final oxidation product was identified by gas chromatography with mass spectrometry detection as hemathein. The distribution of oxidation products differs under buffered and unbuffered conditions. The dye degradation in natural unbuffered environment yields hemathein and hydroxyhematoxylin, which is absent in buffered solution.

Host–Guest interaction of pesticide bifenox with cyclodextrin molecules. An electrochemical study

The reduction of nitroaromatic compound bifenox (methyl 5-(2,4-dichlorophenoxy)-2-nitrobenzoate) was studied in aprotic solvents in the absence or presence of cyclodextrin (CD) molecules of different cavity sizes. βCD and γCD form complexes with bifenox in DMSO with the complex formation constants (5 ± 2) × 102 M–1 [βCD–bifenox] and (3 ± 1) × 102 M–1 [γCD–bifenox], respectively. Bifenox yields a relatively stable anion radical in dimethyl sulfoxide, which is further reduced at more negative potentials by an overall addition of three electrons and four protons to the corresponding phenylhydroxylamine. In the presence of βCD the first reduction wave of bifenox becomes irreversible, it is shifted towards more positive potentials and the uptake of more than one electron is observed (up to four electrons during the exhaustive electrolysis). The first reduction wave of bifenox is not affected by the addition of glucose confirming that a simple availability of protons from the OH groups is not the main factor in further transformation of anion radical in the presence of βCD. The complex formation with βCD facilitates the protonation and additionally protects the molecule from disintegration into 2,4-dichlorophenol. A yield of 2,4-dichlorophenol decreases in the order βCD, γCD and αCD, respectively.

Impedance study of hypoxic cells radiosensitizer etanidazole radical anion in water

Electrochemical transfer of the first electron to cytotoxic radiosensitizer etanidazole (ETN) and ETN radical anion formation in the alkaline buffered aqueous solution were studied by means of electrochemical impedance spectroscopy (EIS). The heterogeneous electron transfer rate constant for the first reduction of ETN (radical anion production), k0, was calculated. The value of k0 from EIS measurements and the previously obtained value of so-called E71 potential indicate that ETN, compared with other possible chemical radiosensitizers, requires lower energy to accept the first electron during the metabolic pathway. However, the necessity of the alkaline pH may decrease the ability of ETN to act as hypoxic radiosensitizer in the human body.

Irregular polarographic currents obey Feigenbaum universality route from order to chaos

The DC polarograms of an oligomer with four repetitive units of ‘extended viologen’ yield in part irregular current fluctuation. The analysis of the current–time transients at different potentials confirms the periodicity, the period doubling and transfer to chaos. The periodicity doubling obeys the universal route to chaos. The estimated value of the Feigenbaum constant 4.68 is very close to the theoretical value δ = 4.6692...