Paraphoma Crown Rot of Pyrethrum (Tanacetum cinerariifolium)

Pyrethrum (Tanacetum cinerariifolium) is commercially cultivated for the extraction of natural pyrethrin insecticides from the oil glands inside seed. Yield decline has caused significant yield losses in Tasmania during the last decade. A new pathogen of pyrethrum causing crown rot and reduced growth of the plants in yield decline affected fields of northern Tasmania was isolated from necrotic crown tissue and described as Paraphoma vinacea. Multigene phylogenetic identification of the pathogen also revealed that P. vinacea was a new species different from other Paraphoma type strains. Glasshouse pathogenicity experiments showed that P. vinacea significantly reduced belowground and total biomass of pyrethrum plants 2 months after inoculation. Dull-tan to reddish-brown discoloration of the cortical and subcortical crown tissue was observed in 100% of the infected plants. P. vinacea infected 75% of the plants inoculated with root dip and soil drench inoculation techniques in an inoculation optimization experiment. P. vinacea, the causal agent of Paraphoma crown rot disease, represents an important pathogen that will negatively impact the commercial cultivation of pyrethrum in Tasmania.

SNP marker discovery, linkage map construction and identification of QTLs for enhanced salinity tolerance in field pea (Pisum sativum L.)

BACKGROUND

Field pea (Pisum sativum L.) is a self-pollinating, diploid, cool-season food legume. Crop production is constrained by multiple biotic and abiotic stress factors, including salinity, that cause reduced growth and yield. Recent advances in genomics have permitted the development of low-cost high-throughput genotyping systems, allowing the construction of saturated genetic linkage maps for identification of quantitative trait loci (QTLs) associated with traits of interest. Genetic markers in close linkage with the relevant genomic regions may then be implemented in varietal improvement programs.

RESULTS

In this study, single nucleotide polymorphism (SNP) markers associated with expressed sequence tags (ESTs) were developed and used to generate comprehensive linkage maps for field pea. From a set of 36,188 variant nucleotide positions detected through in silico analysis, 768 were selected for genotyping of a recombinant inbred line (RIL) population. A total of 705 SNPs (91.7%) successfully detected segregating polymorphisms. In addition to SNPs, genomic and EST-derived simple sequence repeats (SSRs) were assigned to the genetic map in order to obtain an evenly distributed genome-wide coverage. Sequences associated with the mapped molecular markers were used for comparative genomic analysis with other legume species. Higher levels of conserved synteny were observed with the genomes of Medicago truncatula Gaertn. and chickpea (Cicer arietinum L.) than with soybean (Glycine max [L.] Merr.), Lotus japonicus L. and pigeon pea (Cajanus cajan [L.] Millsp.). Parents and RIL progeny were screened at the seedling growth stage for responses to salinity stress, imposed by addition of NaCl in the watering solution at a concentration of 18 dS m-1. Salinity-induced symptoms showed normal distribution, and the severity of the symptoms increased over time. QTLs for salinity tolerance were identified on linkage groups Ps III and VII, with flanking SNP markers suitable for selection of resistant cultivars. Comparison of sequences underpinning these SNP markers to the M. truncatula genome defined genomic regions containing candidate genes associated with saline stress tolerance.

CONCLUSION

The SNP assays and associated genetic linkage maps developed in this study permitted identification of salinity tolerance QTLs and candidate genes. This constitutes an important set of tools for marker-assisted selection (MAS) programs aimed at performance enhancement of field pea cultivars.

Tolerance responses of Brassica juncea to salinity, alkalinity and alkaline salinity

Soil salinity and alkalinity are common constraints to crop productivity in low rainfall regions of the world. These two stresses have been extensively studied but not the combined stress of alkaline salinity. To examine the effects of mild salinity (50mM NaCl) combined with alkalinity (5mM NaHCO3) on growth of Brassica juncea (L.) Czern., 30 genotypes were grown in hydroponics. Growth of all genotypes was substantially reduced by alkaline salinity after 4 weeks of stress. Based on large genotypic differences, NDR 8501 and Vaibhav were selected as tolerant and Xinyou 5 as highly sensitive for further detailed physiological study. Shoot and root biomass and leaf area of the selected genotypes showed greater reduction under alkaline salinity than salinity or alkalinity alone. Alkalinity alone imposed larger negative effect on growth than salinity. K+ and P concentrations in both shoot and root were significantly reduced by alkaline salinity but small difference existed among the selected genotypes. Leaf Fe concentration in Xinyou 5 decreased under alkaline salinity below a critical level of 50mgkg-1, which explained why more chlorosis and a larger growth reduction occurred than in NDR 8501 and Vaibhav. Relatively large shoot and root Na+ concentration also had additional adverse effect on growth under alkaline salinity. Low tissue K+, P and Fe concentrations by alkalinity were the major factors that reduced growth in the selected genotypes. Growth reduction by salinity was mainly caused by Na+ toxicity. Shoot Na+ concentration of NDR 8501 and Vaibhav was almost half those in Xinyou 5, suggesting NDR 8501 and Vaibhav excluded more Na+. However, Na+ exclusion was reduced by more than 50% under alkaline salinity than salinity in the selected genotypes. In conclusion, our results demonstrated that alkaline salinity reduced uptake of essential nutrients and Na+ exclusion that resulted in more negative consequences on growth than salinity alone.

Physiological mechanisms of tolerance to high boron concentration in Brassica rapa

Tolerance to high boron concentration in Brassica rapa was primarily due to low net boron uptake by the roots. However, in the two tolerant genotypes, 39-43% of boron uptake was retained in the tap roots, which limited boron accumulation in the leaves, and also contributed to boron tolerance. In the sensitive genotype, 99% of the increase in boron uptake caused by high soil boron accumulated in the leaves, particularly in the leaf margins. Despite higher transpiration rates, lower net boron uptake occurred in the tolerant genotypes. This result cannot be explained by passive boron uptake alone. Active boron efflux was probably responsible for differences in net boron uptake among tolerant and sensitive genotypes. Boron concentration was much lower in the cell walls than in the cell sap of leaves, indicating that storage of boron in the cell walls was not a tolerance mechanism. Despite high boron concentrations in the leaf symplasm, rates of photosynthesis, transpiration and growth were almost unaffected in the tolerant genotypes. The results demonstrate that boron tolerance in Brassica rapa involves boron exclusion at the root level, boron partitioning away from leaves and, as boron accumulates in leaves despite the first two mechanisms, boron tolerance of the leaf tissue itself.

The effect of sulfur fertilizer on glucoraphanin levels in broccoli (B. oleracea L. var. italica) at different growth stages

Three sulfur (S) treatements were imposed by applying gypsum to three broccoli cultivars (Claudia, Marathon, and TB-234) known to differ in glucoraphanin content of mature seeds. The S treatments were control (very low added S), low S (23 kg S ha(-)(1)), and high S (92 kg S ha(-)(1)). The gypsum applications during the early vegetative phase of the three broccoli cultivars increased S uptake and the glucoraphanin content in each plant organ. There were significant genotypic differences for the content of both S and glucoraphanin in all plant organs at different growth stages with gypsum applications. A large increase in S and glucoraphanin content was found in the green heads of broccoli and mature seeds. S present in glucoraphanin accounted for only 4-10% of total S content in broccoli heads. However, S present in glucoraphanin in mature seeds accounted for 40-46% of the total S in the seeds of moderate and high glucoraphanin cultivars (Marathon and TB-234). The partitioning of S into glucoraphanin also increased with gypsum applications. Differences in S uptake, S distribution between organs, and partitioning of S into glucoraphanin largely explained the differences in glucoraphanin content in the green heads and mature seeds for the three broccoli cultivars and three S treatments.

The effect of post-harvest and packaging treatments on glucoraphanin concentration in broccoli (Brassica oleracea var. italica)

The effects of post-harvest and packaging treatments on glucoraphanin (4-methylsulfinylbutyl glucosinolate), the glucosinolate precursor of anticancer isothiocyanate sulforaphane [4-methylsulfinylbutyl isothiocyanate], were examined in broccoli (Brassica oleracea var. italica) during storage times. The results showed that at 20 degrees C, 55% loss of glucoraphanin concentration occurred in broccoli stored in open boxes during the first 3 days of the treatment and 56% loss was found in broccoli stored in plastic bags by day 7. Under both air and controlled atmosphere (CA) storage, glucoraphanin concentration appeared to fluctuate slightly during 25 days of storage and the concentrations under CA was significantly higher than those stored under air treatment. In modified atmosphere packaging (MAP) treatments, glucoraphanin concentration in air control packaging decreased significantly whereas there were no significant changes in glucoraphanin concentration in MAP with no holes at 4 degrees C and two microholes at 20 degrees C for up to 10 days. Decreases in glucoraphanin concentration occurred when the broccoli heads deteriorated. In the present study, the best method for preserving glucoraphanin concentration in broccoli heads after harvest was storage of broccoli in MAP and refrigeration at 4 degrees C. This condition maintained the glucoraphanin concentration for at least 10 days and also maintained the visual quality of the broccoli heads.

Effects of timing of heat stress and drought on growth and quality of barley grains

In order to determine the importance of timing of short periods of high temperature and drought on grain weight and grain quality, a glasshouse experiment was carried out in which Schooner barley was exposed to short periods of heat stress (40˚C for 6 h/day for 5 consecutive days) or drought at early grain filling (10–15 days after anthesis, DAA), mid grain filling (20–25 DAA), or late grain filling (30–35 DAA). Individual grain weight was most sensitive to heat stress and drought treatments imposed early in grain filling and was less sensitive to later treatments. The reduction in grain weight was greater under heat stress (average 13%) than under drought in this study (average 6%). Starch was reduced in amount and quality, especially with early stresses during grain filling, but grain nitrogen percentage was similar between treatments.

Grain growth and malting quality of barley. 2. Effects of temperature regime before heat stress

Short periods of very high maximum temperature (>35°C) during grain filling appear to reduce grain yield and quality in barley. Tolerance of grain yield and quality to heat stress may be increased when acclimation to high temperature occurs. Two experiments were performed to test the hypothesis that a gradual (or stepped) increase to very high temperature reduces the impact of that stress on grain growth and quality of barley, compared with a sudden increase over the same temperature range. Plants experiencing either a sudden or a gradual increase did not exhibit any differences in grain weight or malting quality, but increasing the temperature in 2 steps (so that plants were exposed to 30 or 34°C for 2 h before a 40°C heat stress) appeared to have produced acclimation, since the reduction in grain weight under the 2-step treatment was about half that of either a sudden or gradual increase in temperature. Heat stress altered grain composition in various ways. The reduction in final grain weight was strongly and linearly related to the reduction in starch content. Grain β-glucan was 4·5 ± 0·5% across treatments and experiments and was significantly reduced in the glasshouse but not in the phytotron experiment. However, β-glucan degradation was similar between treatments in both experiments. Grain nitrogen concentration was very high and similar between treatments. Consequently, diastatic power was high and there was a trend towards a reduction under heat stress. Free amino nitrogen was higher under heat stress, indicating a higher protein modification than in the controls. Malt extract was significantly reduced by heat stress in the glasshouse experiment.

Grain growth and malting quality of barley. 1. Effects of heat stress and moderately high temperature

In this study, controlled-environment conditions were used to compare the effects of moderately high and very high temperatures during grain filling on grain growth and malting quality of barley. Heat stress applied from 15 to 20 days after anthesis (DAA) reduced grain weight by about 35%, whereas longer periods (15–20 days) of moderately high temperature applied from 20 DAA to maturity reduced grain weight by about 6%. Both heat stress and moderately high temperature resulted in reduced grain weight through a reduction in the duration of grain filling. Grain composition was altered by both moderately high and very high temperatures, although the changes were larger under very high temperatures. In general, there was a decrease in starch content, resulting from the reduction in both volume and number of A- and B-type starch granules. Nitrogen concentration was significantly increased only in the 30/25°C treatments, and changes in diastatic power were only minor. There was a reduction in β-glucan content, together with an increase in β-glucan degradation. However, malt extract was not significantly affected by these stresses.

Responses of grain growth and malting quality of barley to short periods of high temperature in field studies using portable chambers

Although environmental conditions during grain filling are often cited as the reason for decreases in malting quality of barley, little is actually known about the specific effects of different environmental conditions on grain yield and quality of barley. In the present study, an attempt was made to assess in the field the effects of short periods of high temperature (>35�C), using portable chambers with thermostatically controlled electric heaters, on grain yield and quality of barley. Two experiments were carried out in 2 consecutive years, involving the malting barley cultivars Schooner (first year) and Parwan (second year). The treatments were (i) control (no chamber, no heating) during the whole grain-filling period, (ii) plots with chambers heated to ca. 40�C for 6 h per day over 5 days starting 17 days after anthesis, and (iii) plots with non-heated chambers for 5 days from 17 days after anthesis. High temperature treatments reduced individual grain weight by 14% in Schooner and 25% in Parwan. There was a reduction in starch content and an increase in nitrogen content in the heat treatments compared to the control, but the G-glucan content was similar to the control. The resulting malt extract was reduced from 79 to 73% in Schooner and from 68.4 to 66.2% in Parwan in ,the heat stress treatment. The starch granule size distribution was also measured. Results indicate that decreases in grain dry matter were due to reductions in number rather than size of starch granules. It is concluded that high temperature reduced the amount of 'maltable' grain by reducing grain size and increasing the screening percentage, and also reduced malt extract by 3-7%, which represents a large decrease for the malting industry.

Posterior dental size reduction in hominids: the Atapuerca evidence

In order to reassess previous hypotheses concerning dental size reduction of the posterior teeth during Pleistocene human evolution, current fossil dental evidence is examined. This evidence includes the large sample of hominid teeth found in recent excavations (1984-1993) in the Sima de los Huesos Middle Pleistocene cave site of the Sierra de Atapuerca (Burgos, Spain). The lower fourth premolars and molars of the Atapuerca hominids, probably older than 300 Kyr, have dimensions similar to those of modern humans. Further, these hominids share the derived state of other features of the posterior teeth with modern humans, such as a similar relative molar size and frequent absence of the hypoconulid, thus suggesting a possible case of parallelism. We believe that dietary changes allowed size reduction of the posterior teeth during the Middle Pleistocene, and the present evidence suggests that the selective pressures that operated on the size variability of these teeth were less restrictive than what is assumed by previous models of dental reduction. Thus, the causal relationship between tooth size decrease and changes in food-preparation techniques during the Pleistocene should be reconsidered. Moreover, the present evidence indicates that the differential reduction of the molars cannot be explained in terms of restriction of available growth space. The molar crown area measurements of a modern human sample were also investigated. The results of this study, as well as previous similar analyses, suggest that a decrease of the rate of cell proliferation, which affected the later-forming crown regions to a greater extent, may be the biological process responsible for the general and differential dental size reduction that occurred during human evolution.

A survey of the effects of high temperature during grain filling on yield and quality of 75 wheat cultivars

The responses of 75 cultivars of wheat to a short (3 day) period of very high temperature (40�C max.) applied at either 10 or 30 days after anthesis were examined under controlled conditions. The effect of high temperature on a number of yield (grain number, individual kernel mass and N per kernel) and quality components (protein composition, apparent amylose content and noodle swelling power) is described for the sample population and for a number of varieties which were either particularly heat tolerant or sensitive. Genotypic variation of response to high temperature of the order of 20% was recorded for the majority of yield and quality components. The fact that responses of this magnitude were caused by exposure to high temperatures lasting only 5 to 6% of the grain filling period demonstrates the extent to which short periods of very high temperature may affect wheat yield and quality.

Variation in yield potential and salt tolerance of selected cultivars and natural populations of Trifolium repens L

The effects of NaCl (0-60 mol m-3) on growth rates, dry matter production, leaf expansion, photosynthesis and tissue ion concentrations were evaluated in 10, widely sourced cultivars and five natural populations of Trifolium repens. Shoot dry matter in all cultivars was significantly reduced at NaCl concentrations greater than 20 mol m-3. The rate of yield decline was greater in those cultivars which had the highest yield under non-saline conditions. In all cultivars, shoot concentrations of Na and Cl increased significantly with increasing external NaCl concentrations, but the response of individual cultivars differed. Differences in the capacity to control the uptake and distribution of Na and Cl into the shoot were related to differences in salt tolerance. Four cultivars (Haifa, Irrigation, Ladino and Tamar), representing extremes in relative salt tolerance, were studied in detail. There were no significant differences in root growth or in the concentrations of Na and Cl in the roots between these cultivars when grown at 0 to 60 mol m-3 NaCl. Rates of leaf expansion and petiole elongation were significantly reduced by NaCl in Ladino and Tamar, which had lower salt tolerance, but were not reduced greatly in Haifa and Irrigation, the two cultivars with higher tolerance. Individual leaf photosynthesis rates were not sensitive to NaCl and did not differ between cultivars. There were no significant differences in shoot yields or in shoot ion concentrations between five populations of T. repens, collected from the Mediterranean Region, and the control cultivar Haifa, although two populations (9028 and 9494) produced more dry matter at 60 mol m-3 NaCl. The plant-to-plant variation for all measured characters was large within both populations and cultivars. This study showed that genotypes which have greater salt tolerance or greater yield potential under non-saline conditions can be selected in order to maximize the yield of T. repens under moderately saline conditions.