1
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de Lichtenberg C, Rapatskiy L, Reus M, Heyno E, Schnegg A, Nowaczyk MM, Lubitz W, Messinger J, Cox N. Assignment of the slowly exchanging substrate water of nature's water-splitting cofactor. Proc Natl Acad Sci U S A 2024; 121:e2319374121. [PMID: 38437550 PMCID: PMC10945779 DOI: 10.1073/pnas.2319374121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 02/12/2024] [Indexed: 03/06/2024] Open
Abstract
Identifying the two substrate water sites of nature's water-splitting cofactor (Mn4CaO5 cluster) provides important information toward resolving the mechanism of O-O bond formation in Photosystem II (PSII). To this end, we have performed parallel substrate water exchange experiments in the S1 state of native Ca-PSII and biosynthetically substituted Sr-PSII employing Time-Resolved Membrane Inlet Mass Spectrometry (TR-MIMS) and a Time-Resolved 17O-Electron-electron Double resonance detected NMR (TR-17O-EDNMR) approach. TR-MIMS resolves the kinetics for incorporation of the oxygen-isotope label into the substrate sites after addition of H218O to the medium, while the magnetic resonance technique allows, in principle, the characterization of all exchangeable oxygen ligands of the Mn4CaO5 cofactor after mixing with H217O. This unique combination shows i) that the central oxygen bridge (O5) of Ca-PSII core complexes isolated from Thermosynechococcus vestitus has, within experimental conditions, the same rate of exchange as the slowly exchanging substrate water (WS) in the TR-MIMS experiments and ii) that the exchange rates of O5 and WS are both enhanced by Ca2+→Sr2+ substitution in a similar manner. In the context of previous TR-MIMS results, this shows that only O5 fulfills all criteria for being WS. This strongly restricts options for the mechanism of water oxidation.
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Affiliation(s)
- Casper de Lichtenberg
- Department of Chemistry- Ångström Laboratorium, Uppsala University, UppsalaS-75120, Sweden
- Department of Chemistry, Chemical Biological Centre, Umeå University, UmeåS-90187, Sweden
| | - Leonid Rapatskiy
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der RuhrD-45470, Germany
| | - Michael Reus
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der RuhrD-45470, Germany
| | - Eiri Heyno
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der RuhrD-45470, Germany
| | - Alexander Schnegg
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der RuhrD-45470, Germany
| | - Marc M. Nowaczyk
- Department of Plant Biochemistry, Ruhr-Universität Bochum, BochumD-44780, Germany
| | - Wolfgang Lubitz
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der RuhrD-45470, Germany
| | - Johannes Messinger
- Department of Chemistry- Ångström Laboratorium, Uppsala University, UppsalaS-75120, Sweden
- Department of Chemistry, Chemical Biological Centre, Umeå University, UmeåS-90187, Sweden
| | - Nicholas Cox
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der RuhrD-45470, Germany
- Research School of Chemistry, Australian National University, Acton ACT2601, Australia
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2
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Lambertz J, Meier-Credo J, Kucher S, Bordignon E, Langer JD, Nowaczyk MM. Isolation of a novel heterodimeric PSII complex via strep-tagged PsbO. Biochim Biophys Acta Bioenerg 2023; 1864:148953. [PMID: 36572329 DOI: 10.1016/j.bbabio.2022.148953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 11/28/2022] [Accepted: 12/14/2022] [Indexed: 12/24/2022]
Abstract
The multi-subunit membrane protein complex photosystem II (PSII) catalyzes the light-driven oxidation of water and with this the initial step of photosynthetic electron transport in plants, algae, and cyanobacteria. Its biogenesis is coordinated by a network of auxiliary proteins that facilitate the stepwise assembly of individual subunits and cofactors, forming various intermediate complexes until fully functional mature PSII is present at the end of the process. In the current study, we purified PSII complexes from a mutant line of the thermophilic cyanobacterium Thermosynechococcus vestitus BP-1 in which the extrinsic subunit PsbO, characteristic for active PSII, was fused with an N-terminal Twin-Strep-tag. Three distinct PSII complexes were separated by ion-exchange chromatography after the initial affinity purification. Two complexes differ in their oligomeric state (monomeric and dimeric) but share the typical subunit composition of mature PSII. They are characterized by the very high oxygen evolving activity of approx. 6000 μmol O2·(mg Chl·h)-1. Analysis of the third (heterodimeric) PSII complex revealed lower oxygen evolving activity of approx. 3000 μmol O2·(mg Chl·h)-1 and a manganese content of 2.7 (±0.2) per reaction center compared to 3.7 (±0.2) of fully active PSII. Mass spectrometry and time-resolved fluorescence spectroscopy further indicated that PsbO is partially replaced by Psb27 in this PSII fraction, thus implying a role of this complex in PSII repair.
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Affiliation(s)
- Jan Lambertz
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitätsstraße 150, 44801 Bochum, Germany
| | - Jakob Meier-Credo
- Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Str. 3, 60438 Frankfurt am Main, Germany
| | - Svetlana Kucher
- Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstraße 150, 44801 Bochum, Germany
| | - Enrica Bordignon
- Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstraße 150, 44801 Bochum, Germany; Department of Physical Chemistry, University of Geneva, Quai Ernest Ansermet 30, 1211 Geneva, Switzerland(1)
| | - Julian D Langer
- Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Str. 3, 60438 Frankfurt am Main, Germany; Proteomics, Max Planck Institute for Brain Research, Max-von-Laue-Str. 4, 60438 Frankfurt am Main, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitätsstraße 150, 44801 Bochum, Germany; Department of Biochemistry, University of Rostock, Albert-Einstein-Str. 3, 18059 Rostock, Germany(1).
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3
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Baikie TK, Wey LT, Lawrence JM, Medipally H, Reisner E, Nowaczyk MM, Friend RH, Howe CJ, Schnedermann C, Rao A, Zhang JZ. Photosynthesis re-wired on the pico-second timescale. Nature 2023; 615:836-840. [PMID: 36949188 DOI: 10.1038/s41586-023-05763-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 01/26/2023] [Indexed: 03/24/2023]
Abstract
Photosystems II and I (PSII, PSI) are the reaction centre-containing complexes driving the light reactions of photosynthesis; PSII performs light-driven water oxidation and PSI further photo-energizes harvested electrons. The impressive efficiencies of the photosystems have motivated extensive biological, artificial and biohybrid approaches to 're-wire' photosynthesis for higher biomass-conversion efficiencies and new reaction pathways, such as H2 evolution or CO2 fixation1,2. Previous approaches focused on charge extraction at terminal electron acceptors of the photosystems3. Electron extraction at earlier steps, perhaps immediately from photoexcited reaction centres, would enable greater thermodynamic gains; however, this was believed impossible with reaction centres buried at least 4 nm within the photosystems4,5. Here, we demonstrate, using in vivo ultrafast transient absorption (TA) spectroscopy, extraction of electrons directly from photoexcited PSI and PSII at early points (several picoseconds post-photo-excitation) with live cyanobacterial cells or isolated photosystems, and exogenous electron mediators such as 2,6-dichloro-1,4-benzoquinone (DCBQ) and methyl viologen. We postulate that these mediators oxidize peripheral chlorophyll pigments participating in highly delocalized charge-transfer states after initial photo-excitation. Our results challenge previous models that the photoexcited reaction centres are insulated within the photosystem protein scaffold, opening new avenues to study and re-wire photosynthesis for biotechnologies and semi-artificial photosynthesis.
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Affiliation(s)
- Tomi K Baikie
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | - Laura T Wey
- Department of Biochemistry, University of Cambridge, Cambridge, UK
- Department of Life Technologies, University of Turku, Turku, Finland
| | - Joshua M Lawrence
- Department of Biochemistry, University of Cambridge, Cambridge, UK
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
| | | | - Erwin Reisner
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Marc M Nowaczyk
- Plant Biochemistry, Ruhr University Bochum, Bochum, Germany
- Department of Biochemistry, University of Rostock, Rostock, Germany
| | | | | | | | - Akshay Rao
- Cavendish Laboratory, University of Cambridge, Cambridge, UK.
| | - Jenny Z Zhang
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK.
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4
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Wang P, Frank A, Zhao F, Nowaczyk MM, Conzuelo F, Schuhmann W. A biomimetic assembly of folded photosystem I monolayers for an improved light utilization in biophotovoltaic devices. Bioelectrochemistry 2023; 149:108288. [DOI: 10.1016/j.bioelechem.2022.108288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 10/03/2022] [Accepted: 10/05/2022] [Indexed: 12/04/2022]
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5
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Möller AM, Brückner S, Tilg LJ, Kutscher B, Nowaczyk MM, Narberhaus F. LapB (YciM) orchestrates protein-protein interactions at the interface of lipopolysaccharide and phospholipid biosynthesis. Mol Microbiol 2023; 119:29-43. [PMID: 36464488 DOI: 10.1111/mmi.15005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 11/14/2022] [Accepted: 11/14/2022] [Indexed: 11/23/2022]
Abstract
The outer membrane (OM) of Gram-negative bacteria functions as an essential barrier and is characterized by an asymmetric bilayer with lipopolysaccharide (LPS) in the outer leaflet. The enzyme LpxC catalyzes the first committed step in LPS biosynthesis. It plays a critical role in maintaining the balance between LPS and phospholipids (PL), which are both derived from the same biosynthetic precursor. The essential inner membrane proteins YejM (PbgA, LapC), LapB (YciM), and the protease FtsH are known to account for optimal LpxC levels, but the mechanistic details are poorly understood. LapB is thought to be a bi-functional protein serving as an adaptor for FtsH-mediated turnover of LpxC and acting as a scaffold in the coordination of LPS biosynthesis. Here, we provide experimental evidence for the physical interaction of LapB with proteins at the biosynthetic node from where the LPS and PL biosynthesis pathways diverge. By a total of four in vivo and in vitro assays, we demonstrate protein-protein interactions between LapB and the LPS biosynthesis enzymes LpxA, LpxC, and LpxD, between LapB and YejM, the anti-adaptor protein regulating LapB activity, and between LapB and FabZ, the first PL biosynthesis enzyme. Moreover, we uncovered a new adaptor function of LapB in destabilizing not only LpxC but also LpxD. Overall, our study shows that LapB is a multi-functional protein that serves as a protein-protein interaction hub for key enzymes in LPS and PL biogenesis presumably by virtue of multiple tetratricopeptide repeat (TPR) motifs in its cytoplasmic C-terminal region.
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Affiliation(s)
| | - Simon Brückner
- Microbial Biology, Ruhr University Bochum, Bochum, Germany
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6
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Redding KE, Appel J, Boehm M, Schuhmann W, Nowaczyk MM, Yacoby I, Gutekunst K. Advances and challenges in photosynthetic hydrogen production. Trends Biotechnol 2022; 40:1313-1325. [PMID: 35581021 DOI: 10.1016/j.tibtech.2022.04.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 04/14/2022] [Accepted: 04/15/2022] [Indexed: 01/21/2023]
Abstract
The vision to replace coal with hydrogen goes back to Jules Verne in 1874. However, sustainable hydrogen production remains challenging. The most elegant approach is to utilize photosynthesis for water splitting and to subsequently save solar energy as hydrogen. Cyanobacteria and green algae are unicellular photosynthetic organisms that contain hydrogenases and thereby possess the enzymatic equipment for photosynthetic hydrogen production. These features of cyanobacteria and algae have inspired artificial and semi-artificial in vitro techniques, that connect photoexcited materials or enzymes with hydrogenases or mimics of these for hydrogen production. These in vitro methods have on their part been models for the fusion of cyanobacterial and algal hydrogenases to photosynthetic photosystem I (PSI) in vivo, which recently succeeded as proofs of principle.
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Affiliation(s)
- Kevin E Redding
- School of Molecular Sciences and Center for Bioenergy & Photosynthesis, Arizona State University, Tempe, AZ, USA
| | - Jens Appel
- Molecular Plant Physiology, Bioenergetics in Photoautotrophs, University Kassel, 34132 Kassel, Germany
| | - Marko Boehm
- Molecular Plant Physiology, Bioenergetics in Photoautotrophs, University Kassel, 34132 Kassel, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Universitätsstrasse 150, D-44780 Bochum, Germany
| | - Iftach Yacoby
- School of Plant Sciences and Food Security, The George S. Wise Faculty of Life Sciences, Tel-Aviv University, Ramat Aviv, 69978, Israel
| | - Kirstin Gutekunst
- Molecular Plant Physiology, Bioenergetics in Photoautotrophs, University Kassel, 34132 Kassel, Germany.
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7
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Redding KE, Appel J, Boehm M, Schuhmann W, Nowaczyk MM, Yacoby I, Gutekunst K. Advances and challenges in photosynthetic hydrogen production. Trends Biotechnol 2022; 40:1393. [PMID: 35863948 DOI: 10.1016/j.tibtech.2022.06.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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8
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Meier-Credo J, Preiss L, Wüllenweber I, Resemann A, Nordmann C, Zabret J, Suckau D, Michel H, Nowaczyk MM, Meier T, Langer JD. Top-Down Identification and Sequence Analysis of Small Membrane Proteins Using MALDI-MS/MS. J Am Soc Mass Spectrom 2022; 33:1293-1302. [PMID: 35758524 PMCID: PMC9264385 DOI: 10.1021/jasms.2c00102] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Identification and sequence determination by mass spectrometry have become routine analyses for soluble proteins. Membrane proteins, however, remain challenging targets due to their hydrophobicity and poor annotation. In particular small membrane proteins often remain unnoticed as they are largely inaccessible to Bottom-Up proteomics. Recent advances in structural biology, though, have led to multiple membrane protein complex structures being determined at sufficiently high resolution to detect uncharacterized, small subunits. In this work we offer a guide for the mass spectrometric characterization of solvent extraction-based purifications of small membrane proteins isolated from protein complexes and cellular membranes. We first demonstrate our Top-Down MALDI-MS/MS approach on a Photosystem II preparation, analyzing target protein masses between 2.5 and 9 kDa with high accuracy and sensitivity. Then we apply our technique to purify and sequence the mycobacterial ATP synthase c subunit, the molecular target of the antibiotic drug bedaquiline. We show that our approach can be used to directly track and pinpoint single amino acid mutations that lead to antibiotic resistance in only 4 h. While not applicable as a high-throughput pipeline, our MALDI-MS/MS and ISD-based approach can identify and provide valuable sequence information on small membrane proteins, which are inaccessible to conventional Bottom-Up techniques. We show that our approach can be used to unambiguously identify single-point mutations leading to antibiotic resistance in mycobacteria.
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Affiliation(s)
- Jakob Meier-Credo
- Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany
- Proteomics, Max
Planck Institute for Brain Research, Max-von-Laue-Strasse 4, 60438 Frankfurt am Main, Germany
| | - Laura Preiss
- Structural
Biology, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany
| | - Imke Wüllenweber
- Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany
- Proteomics, Max
Planck Institute for Brain Research, Max-von-Laue-Strasse 4, 60438 Frankfurt am Main, Germany
| | - Anja Resemann
- Bruker
Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359 Bremen, Germany
| | - Christoph Nordmann
- Bruker
Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359 Bremen, Germany
| | - Jure Zabret
- Department
of Plant Biochemistry, Ruhr University Bochum, 44780 Bochum, Germany
| | - Detlev Suckau
- Bruker
Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359 Bremen, Germany
| | - Hartmut Michel
- Molecular
Membrane Biology, Max Planck Institute of
Biophysics, Max-von-Laue-Strasse
3, 60438 Frankfurt
am Main, Germany
| | - Marc M. Nowaczyk
- Department
of Plant Biochemistry, Ruhr University Bochum, 44780 Bochum, Germany
| | - Thomas Meier
- Department
of Life Sciences, Imperial College London, Exhibition Road, SW7 2AZ London, United Kingdom
| | - Julian D. Langer
- Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany
- Proteomics, Max
Planck Institute for Brain Research, Max-von-Laue-Strasse 4, 60438 Frankfurt am Main, Germany
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9
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Lambertz J, Liauw P, Whitelegge JP, Nowaczyk MM. Mass spectrometry analysis of the photosystem II assembly factor Psb27 revealed variations in its lipid modification. Photosynth Res 2022; 152:305-316. [PMID: 34910272 PMCID: PMC9458691 DOI: 10.1007/s11120-021-00891-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Accepted: 12/03/2021] [Indexed: 06/14/2023]
Abstract
The assembly of large, multi-cofactor membrane protein complexes like photosystem II (PSII) requires a high level of coordination. The process is facilitated by a large network of auxiliary proteins that bind transiently to unassembled subunits, preassembled modules or intermediate states of PSII, which are comprised of a subset of subunits. However, analysis of these immature, partially assembled PSII complexes is hampered by their low abundance and intrinsic instability. In this study, PSII was purified from the thermophilic cyanobacterium Thermosynechococcus elongatus via Twin-Strep-tagged CP43 and further separated by ion exchange chromatography into mature and immature complexes. Mass spectrometry analysis of the immature Psb27-PSII intermediate revealed six different Psb27 proteoforms with distinct lipid modifications. The maturation and functional role of thylakoid localized lipoproteins are discussed.
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Affiliation(s)
- Jan Lambertz
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Bochum, Germany
| | - Pasqual Liauw
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Bochum, Germany
| | - Julian P Whitelegge
- The Pasarow Mass Spectrometry Laboratory, David Geffen School of Medicine, The Jane and Terry Semel Institute for Neuroscience and Human Behavior, UCLA, Los Angeles, CA, 90095, USA
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Bochum, Germany.
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10
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Ostermeier M, Heinz S, Hamm J, Zabret J, Rast A, Klingl A, Nowaczyk MM, Nickelsen J. Thylakoid attachment to the plasma membrane in Synechocystis sp. PCC 6803 requires the AncM protein. Plant Cell 2022; 34:655-678. [PMID: 34665262 PMCID: PMC8846179 DOI: 10.1093/plcell/koab253] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 10/06/2021] [Indexed: 06/13/2023]
Abstract
Thylakoids are the highly specialized internal membrane systems that harbor the photosynthetic electron transport machinery in cyanobacteria and in chloroplasts. In Synechocystis sp. PCC 6803, thylakoid membranes (TMs) are arranged in peripheral sheets that occasionally converge on the plasma membrane (PM) to form thylakoid convergence membranes (TCMs). TCMs connect several thylakoid sheets and form local contact sites called thylapses between the two membrane systems, at which the early steps of photosystem II (PSII) assembly occur. The protein CurT is one of the main drivers of TCM formation known so far. Here, we identify, by whole-genome sequencing of a curT- suppressor strain, the protein anchor of convergence membranes (AncM) as a factor required for the attachment of thylakoids to the PM at thylapses. An ancM- mutant is shown to have a photosynthetic phenotype characterized by reductions in oxygen-evolution rate, PSII accumulation, and PS assembly. Moreover, the ancM- strain exhibits an altered thylakoid ultrastructure with additional sheets and TCMs detached from the PM. By combining biochemical studies with fluorescence and correlative light-electron microscopy-based approaches, we show that AncM is an integral membrane protein located in biogenic TCMs that form thylapses. These data suggest an antagonistic function of AncM and CurT in shaping TM ultrastructure.
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Affiliation(s)
- Matthias Ostermeier
- Department of Molecular Plant Science, LMU Munich, Planegg-Martinsried, 82152, Germany
| | - Steffen Heinz
- Department of Molecular Plant Science, LMU Munich, Planegg-Martinsried, 82152, Germany
| | - Julia Hamm
- Department of Molecular Plant Science, LMU Munich, Planegg-Martinsried, 82152, Germany
| | - Jure Zabret
- Department of Plant Biochemistry, Ruhr-University Bochum, Bochum 44801, Germany
| | - Anna Rast
- Department of Molecular Plant Science, LMU Munich, Planegg-Martinsried, 82152, Germany
| | - Andreas Klingl
- Department of Plant Development, LMU Munich, Planegg-Martinsried, 82152, Germany
| | - Marc M Nowaczyk
- Department of Plant Biochemistry, Ruhr-University Bochum, Bochum 44801, Germany
| | - Jörg Nickelsen
- Department of Molecular Plant Science, LMU Munich, Planegg-Martinsried, 82152, Germany
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11
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Richardson KH, Wright JJ, Šimėnas M, Thiemann J, Esteves AM, McGuire G, Myers WK, Morton JJL, Hippler M, Nowaczyk MM, Hanke GT, Roessler MM. Functional basis of electron transport within photosynthetic complex I. Nat Commun 2021; 12:5387. [PMID: 34508071 PMCID: PMC8433477 DOI: 10.1038/s41467-021-25527-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Accepted: 08/11/2021] [Indexed: 02/08/2023] Open
Abstract
Photosynthesis and respiration rely upon a proton gradient to produce ATP. In photosynthesis, the Respiratory Complex I homologue, Photosynthetic Complex I (PS-CI) is proposed to couple ferredoxin oxidation and plastoquinone reduction to proton pumping across thylakoid membranes. However, little is known about the PS-CI molecular mechanism and attempts to understand its function have previously been frustrated by its large size and high lability. Here, we overcome these challenges by pushing the limits in sample size and spectroscopic sensitivity, to determine arguably the most important property of any electron transport enzyme - the reduction potentials of its cofactors, in this case the iron-sulphur clusters of PS-CI (N0, N1 and N2), and unambiguously assign them to the structure using double electron-electron resonance. We have thus determined the bioenergetics of the electron transfer relay and provide insight into the mechanism of PS-CI, laying the foundations for understanding of how this important bioenergetic complex functions.
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Affiliation(s)
- Katherine H. Richardson
- grid.4868.20000 0001 2171 1133School of Biological and Chemical Sciences, Queen Mary University of London, London, UK ,grid.7445.20000 0001 2113 8111Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, UK
| | - John J. Wright
- grid.4868.20000 0001 2171 1133School of Biological and Chemical Sciences, Queen Mary University of London, London, UK ,grid.14105.310000000122478951Medical Research Council Mitochondrial Biology Unit, Wellcome Trust/MRC Building, Cambridge, UK
| | - Mantas Šimėnas
- grid.83440.3b0000000121901201London Centre for Nanotechnology, University College London, London, UK
| | - Jacqueline Thiemann
- grid.5570.70000 0004 0490 981XPlant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Ana M. Esteves
- grid.4868.20000 0001 2171 1133School of Biological and Chemical Sciences, Queen Mary University of London, London, UK
| | - Gemma McGuire
- grid.4868.20000 0001 2171 1133School of Biological and Chemical Sciences, Queen Mary University of London, London, UK ,grid.7445.20000 0001 2113 8111Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, UK
| | - William K. Myers
- grid.4991.50000 0004 1936 8948Inorganic Chemistry, University of Oxford, Oxford, UK
| | - John J. L. Morton
- grid.83440.3b0000000121901201London Centre for Nanotechnology, University College London, London, UK ,grid.83440.3b0000000121901201Department of Electronic & Electrical Engineering, UCL, London, UK
| | - Michael Hippler
- grid.5949.10000 0001 2172 9288Institute of Plant Biology and Biotechnology, University of Münster, Münster, Germany ,grid.261356.50000 0001 1302 4472Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan
| | - Marc M. Nowaczyk
- grid.5570.70000 0004 0490 981XPlant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Guy T. Hanke
- grid.4868.20000 0001 2171 1133School of Biological and Chemical Sciences, Queen Mary University of London, London, UK
| | - Maxie M. Roessler
- grid.7445.20000 0001 2113 8111Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, UK
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12
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Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rögner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R. Cryo-EM photosystem I structure reveals adaptation mechanisms to extreme high light in Chlorella ohadii. Nat Plants 2021; 7:1314-1322. [PMID: 34462576 DOI: 10.1038/s41477-021-00983-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Accepted: 07/07/2021] [Indexed: 05/10/2023]
Abstract
Photosynthesis in deserts is challenging since it requires fast adaptation to rapid night-to-day changes, that is, from dawn's low light (LL) to extreme high light (HL) intensities during the daytime. To understand these adaptation mechanisms, we purified photosystem I (PSI) from Chlorella ohadii, a green alga that was isolated from a desert soil crust, and identified the essential functional and structural changes that enable the photosystem to perform photosynthesis under extreme high light conditions. The cryo-electron microscopy structures of PSI from cells grown under low light (PSILL) and high light (PSIHL), obtained at 2.70 and 2.71 Å, respectively, show that part of light-harvesting antenna complex I (LHCI) and the core complex subunit (PsaO) are eliminated from PSIHL to minimize the photodamage. An additional change is in the pigment composition and their number in LHCIHL; about 50% of chlorophyll b is replaced by chlorophyll a. This leads to higher electron transfer rates in PSIHL and might enable C. ohadii PSI to act as a natural photosynthesiser in photobiocatalytic systems. PSIHL or PSILL were attached to an electrode and their induced photocurrent was determined. To obtain photocurrents comparable with PSIHL, 25 times the amount of PSILL was required, demonstrating the high efficiency of PSIHL. Hence, we suggest that C. ohadii PSIHL is an ideal candidate for the design of desert artificial photobiocatalytic systems.
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Affiliation(s)
- Ido Caspy
- Department of Biochemistry, The George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Ehud Neumann
- Institute of Life Science, Faculty of Science and Mathematics, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Maria Fadeeva
- Department of Biochemistry, The George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Varda Liveanu
- Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel
| | - Anton Savitsky
- Faculty of Physics, Technical University Dortmund, Dortmund, Germany
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr, Germany
| | - Anna Frank
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Yael Levi Kalisman
- Institute of Life Science, Faculty of Science and Mathematics, The Hebrew University of Jerusalem, Jerusalem, Israel
- The Centre for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Yoel Shkolnisky
- School of Mathematical Sciences, Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Omer Murik
- Institute of Life Science, Faculty of Science and Mathematics, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Haim Treves
- Institute of Life Science, Faculty of Science and Mathematics, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Volker Hartmann
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry-Centre for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany
| | - Matthias Rögner
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Itamar Willner
- Institute of Life Science, Faculty of Science and Mathematics, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Aaron Kaplan
- Institute of Life Science, Faculty of Science and Mathematics, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Gadi Schuster
- Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel
| | - Nathan Nelson
- Department of Biochemistry, The George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
| | - Wolfgang Lubitz
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr, Germany.
| | - Rachel Nechushtai
- Institute of Life Science, Faculty of Science and Mathematics, The Hebrew University of Jerusalem, Jerusalem, Israel.
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13
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Zabret J, Bohn S, Schuller SK, Arnolds O, Möller M, Meier-Credo J, Liauw P, Chan A, Tajkhorshid E, Langer JD, Stoll R, Krieger-Liszkay A, Engel BD, Rudack T, Schuller JM, Nowaczyk MM. Structural insights into photosystem II assembly. Nat Plants 2021; 7:524-538. [PMID: 33846594 PMCID: PMC8094115 DOI: 10.1038/s41477-021-00895-0] [Citation(s) in RCA: 77] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Accepted: 03/04/2021] [Indexed: 05/07/2023]
Abstract
Biogenesis of photosystem II (PSII), nature's water-splitting catalyst, is assisted by auxiliary proteins that form transient complexes with PSII components to facilitate stepwise assembly events. Using cryo-electron microscopy, we solved the structure of such a PSII assembly intermediate from Thermosynechococcus elongatus at 2.94 Å resolution. It contains three assembly factors (Psb27, Psb28 and Psb34) and provides detailed insights into their molecular function. Binding of Psb28 induces large conformational changes at the PSII acceptor side, which distort the binding pocket of the mobile quinone (QB) and replace the bicarbonate ligand of non-haem iron with glutamate, a structural motif found in reaction centres of non-oxygenic photosynthetic bacteria. These results reveal mechanisms that protect PSII from damage during biogenesis until water splitting is activated. Our structure further demonstrates how the PSII active site is prepared for the incorporation of the Mn4CaO5 cluster, which performs the unique water-splitting reaction.
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Affiliation(s)
- Jure Zabret
- Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Stefan Bohn
- Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany
| | - Sandra K Schuller
- Department of Structural Cell Biology, Max Planck Institute of Biochemistry, Martinsried, Germany
- CryoEM of Molecular Machines, SYNMIKRO Research Center and Department of Chemistry, Philipps University of Marburg, Marburg, Germany
| | - Oliver Arnolds
- Biomolecular Spectroscopy and RUBiospek|NMR, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany
| | - Madeline Möller
- Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | | | - Pasqual Liauw
- Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Aaron Chan
- NIH Center for Macromolecular Modeling and Bioinformatics, Beckman Institute for Advanced Science and Technology, Department of Biochemistry, and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Emad Tajkhorshid
- NIH Center for Macromolecular Modeling and Bioinformatics, Beckman Institute for Advanced Science and Technology, Department of Biochemistry, and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Julian D Langer
- Proteomics, Max Planck Institute of Biophysics, Frankfurt, Germany
- Proteomics, Max Planck Institute for Brain Research, Frankfurt, Germany
| | - Raphael Stoll
- Biomolecular Spectroscopy and RUBiospek|NMR, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany
| | - Anja Krieger-Liszkay
- Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, Gif-sur-Yvette, France
| | - Benjamin D Engel
- Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany
- Helmholtz Pioneer Campus, Helmholtz Zentrum München, Neuherberg, Germany
- Department of Chemistry, Technical University of Munich, Garching, Germany
| | - Till Rudack
- Biospectroscopy, Center for Protein Diagnostics (ProDi), Ruhr University Bochum, Bochum, Germany.
- Department of Biophysics, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany.
| | - Jan M Schuller
- Department of Structural Cell Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.
- CryoEM of Molecular Machines, SYNMIKRO Research Center and Department of Chemistry, Philipps University of Marburg, Marburg, Germany.
| | - Marc M Nowaczyk
- Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany.
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14
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Çoruh O, Frank A, Tanaka H, Kawamoto A, El-Mohsnawy E, Kato T, Namba K, Gerle C, Nowaczyk MM, Kurisu G. Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster. Commun Biol 2021; 4:304. [PMID: 33686186 PMCID: PMC7940658 DOI: 10.1038/s42003-021-01808-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 02/05/2021] [Indexed: 01/31/2023] Open
Abstract
A high-resolution structure of trimeric cyanobacterial Photosystem I (PSI) from Thermosynechococcus elongatus was reported as the first atomic model of PSI almost 20 years ago. However, the monomeric PSI structure has not yet been reported despite long-standing interest in its structure and extensive spectroscopic characterization of the loss of red chlorophylls upon monomerization. Here, we describe the structure of monomeric PSI from Thermosynechococcus elongatus BP-1. Comparison with the trimer structure gave detailed insights into monomerization-induced changes in both the central trimerization domain and the peripheral regions of the complex. Monomerization-induced loss of red chlorophylls is assigned to a cluster of chlorophylls adjacent to PsaX. Based on our findings, we propose a role of PsaX in the stabilization of red chlorophylls and that lipids of the surrounding membrane present a major source of thermal energy for uphill excitation energy transfer from red chlorophylls to P700.
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Affiliation(s)
- Orkun Çoruh
- Laboratory for Protein Crystallography, Institute for Protein Research, Osaka University, Suita, Osaka, Japan
- Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan
| | - Anna Frank
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Bochum, Germany
| | - Hideaki Tanaka
- Laboratory for Protein Crystallography, Institute for Protein Research, Osaka University, Suita, Osaka, Japan
| | - Akihiro Kawamoto
- Laboratory for Protein Crystallography, Institute for Protein Research, Osaka University, Suita, Osaka, Japan
| | - Eithar El-Mohsnawy
- Department of Botany and Microbiology, Faculty of Science, Kafrelsheikh University, Kafr Al Sheikh, Egypt
| | - Takayuki Kato
- Laboratory of CryoEM Structural Biology, Institute for Protein Research, Osaka University, Suita, Osaka, Japan
| | - Keiichi Namba
- Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan
- RIKEN Center for Biosystems Dynamics Research and SPring-8 Center, Suita, Osaka, Japan
- JEOL YOKOGUSHI Research Alliance Laboratories, Osaka University, Suita, Osaka, Japan
| | - Christoph Gerle
- Laboratory for Protein Crystallography, Institute for Protein Research, Osaka University, Suita, Osaka, Japan.
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Bochum, Germany.
| | - Genji Kurisu
- Laboratory for Protein Crystallography, Institute for Protein Research, Osaka University, Suita, Osaka, Japan.
- Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan.
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15
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Wang P, Frank A, Zhao F, Szczesny J, Junqueira JRC, Zacarias S, Ruff A, Nowaczyk MM, Pereira IAC, Rögner M, Conzuelo F, Schuhmann W. Gemischte Photosystem‐I‐Monoschichten ermöglichen einen verbesserten anisotropen Elektronenfluss in Biophotovoltaik‐Systemen durch Unterdrückung elektrischer Kurzschlüsse. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202008958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Panpan Wang
- Analytical Chemistry – Center for Electrochemical Sciences (CES) Faculty of Chemistry and Biochemistry Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - Anna Frank
- Plant Biochemistry Faculty of Biology and Biotechnology Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - Fangyuan Zhao
- Analytical Chemistry – Center for Electrochemical Sciences (CES) Faculty of Chemistry and Biochemistry Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - Julian Szczesny
- Analytical Chemistry – Center for Electrochemical Sciences (CES) Faculty of Chemistry and Biochemistry Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - João R. C. Junqueira
- Analytical Chemistry – Center for Electrochemical Sciences (CES) Faculty of Chemistry and Biochemistry Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - Sónia Zacarias
- Instituto de Tecnologia Química e Biológica António Xavier Universidade Nova de Lisboa Oeiras 2780-157 Portugal
| | - Adrian Ruff
- Analytical Chemistry – Center for Electrochemical Sciences (CES) Faculty of Chemistry and Biochemistry Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
- PPG (Deutschland) Business Support GmbH PPG Packaging Coatings EMEA Erlenbrunnenstraße 20 72411 Bodelshausen Deutschland
| | - Marc M. Nowaczyk
- Plant Biochemistry Faculty of Biology and Biotechnology Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - Inês A. C. Pereira
- Instituto de Tecnologia Química e Biológica António Xavier Universidade Nova de Lisboa Oeiras 2780-157 Portugal
| | - Matthias Rögner
- Plant Biochemistry Faculty of Biology and Biotechnology Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - Felipe Conzuelo
- Analytical Chemistry – Center for Electrochemical Sciences (CES) Faculty of Chemistry and Biochemistry Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
| | - Wolfgang Schuhmann
- Analytical Chemistry – Center for Electrochemical Sciences (CES) Faculty of Chemistry and Biochemistry Ruhr University Bochum Universitätsstraße 150 44780 Bochum Deutschland
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16
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Wang P, Frank A, Zhao F, Szczesny J, Junqueira JRC, Zacarias S, Ruff A, Nowaczyk MM, Pereira IAC, Rögner M, Conzuelo F, Schuhmann W. Closing the Gap for Electronic Short-Circuiting: Photosystem I Mixed Monolayers Enable Improved Anisotropic Electron Flow in Biophotovoltaic Devices. Angew Chem Int Ed Engl 2021; 60:2000-2006. [PMID: 33075190 PMCID: PMC7894356 DOI: 10.1002/anie.202008958] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Revised: 10/15/2020] [Indexed: 11/10/2022]
Abstract
Well-defined assemblies of photosynthetic protein complexes are required for an optimal performance of semi-artificial energy conversion devices, capable of providing unidirectional electron flow when light-harvesting proteins are interfaced with electrode surfaces. We present mixed photosystem I (PSI) monolayers constituted of native cyanobacterial PSI trimers in combination with isolated PSI monomers from the same organism. The resulting compact arrangement ensures a high density of photoactive protein complexes per unit area, providing the basis to effectively minimize short-circuiting processes that typically limit the performance of PSI-based bioelectrodes. The PSI film is further interfaced with redox polymers for optimal electron transfer, enabling highly efficient light-induced photocurrent generation. Coupling of the photocathode with a [NiFeSe]-hydrogenase confirms the possibility to realize light-induced H2 evolution.
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Affiliation(s)
- Panpan Wang
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - Anna Frank
- Plant BiochemistryFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - Fangyuan Zhao
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - Julian Szczesny
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - João R. C. Junqueira
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - Sónia Zacarias
- Instituto de Tecnologia Química e Biológica António XavierUniversidade Nova de LisboaOeiras2780-157Portugal
| | - Adrian Ruff
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätsstrasse 15044780BochumGermany
- Present Address: PPG (Deutschland) Business Support GmbHPPG Packaging Coatings EMEAErlenbrunnenstrasse 2072411BodelshausenGermany
| | - Marc M. Nowaczyk
- Plant BiochemistryFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - Inês A. C. Pereira
- Instituto de Tecnologia Química e Biológica António XavierUniversidade Nova de LisboaOeiras2780-157Portugal
| | - Matthias Rögner
- Plant BiochemistryFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - Felipe Conzuelo
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätsstrasse 15044780BochumGermany
| | - Wolfgang Schuhmann
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätsstrasse 15044780BochumGermany
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17
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Assil-Companioni L, Büchsenschütz HC, Solymosi D, Dyczmons-Nowaczyk NG, Bauer KKF, Wallner S, Macheroux P, Allahverdiyeva Y, Nowaczyk MM, Kourist R. Engineering of NADPH Supply Boosts Photosynthesis-Driven Biotransformations. ACS Catal 2020; 10:11864-11877. [PMID: 33101760 PMCID: PMC7574619 DOI: 10.1021/acscatal.0c02601] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Revised: 09/04/2020] [Indexed: 02/08/2023]
Abstract
![]()
Light-driven biocatalysis
in recombinant cyanobacteria provides
highly atom-efficient cofactor regeneration via photosynthesis,
thereby remediating constraints associated with sacrificial cosubstrates.
However, despite the remarkable specific activities of photobiocatalysts,
self-shading at moderate-high cell densities limits efficient space-time-yields
of heterologous enzymatic reactions. Moreover, efficient integration
of an artificial electron sink into the tightly regulated network
of cyanobacterial electron pathways can be highly challenging. Here,
we used C=C bond reduction of 2-methylmaleimide by the NADPH-dependent
ene-reductase YqjM as a model reaction for light-dependent biotransformations.
Time-resolved NADPH fluorescence spectroscopy allowed direct monitoring
of in-cell YqjM activity and revealed differences in NADPH steady-state
levels and oxidation kinetics between different genetic constructs.
This effect correlates with specific activities of whole-cells, which
demonstrated conversions of >99%. Further channelling of electrons
toward heterologous YqjM by inactivation of the flavodiiron proteins
(Flv1/Flv3) led to a 2-fold improvement in specific activity at moderate
cell densities, thereby elucidating the possibility of accelerating
light-driven biotransformations by the removal of natural competing
electron sinks. In the best case, an initial product formation rate
of 18.3 mmol h–1 L–1 was reached,
allowing the complete conversion of a 60 mM substrate solution within
4 h.
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Affiliation(s)
- Leen Assil-Companioni
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
- ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
| | - Hanna C. Büchsenschütz
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
| | - Dániel Solymosi
- Molecular Plant Biology unit, Department of Biochemistry, Faculty of Science and Engineering, University of Turku, Turku 20014, Finland
| | - Nina G. Dyczmons-Nowaczyk
- Department of Plant Biochemistry, Faculty of Biology & Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Kristin K. F. Bauer
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
| | - Silvia Wallner
- Institute of Biochemistry, Graz University of Technology, Petersgasse 10, 8010 Graz, Austria
| | - Peter Macheroux
- Institute of Biochemistry, Graz University of Technology, Petersgasse 10, 8010 Graz, Austria
| | - Yagut Allahverdiyeva
- Molecular Plant Biology unit, Department of Biochemistry, Faculty of Science and Engineering, University of Turku, Turku 20014, Finland
| | - Marc M. Nowaczyk
- Department of Plant Biochemistry, Faculty of Biology & Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Robert Kourist
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
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18
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Böhmer S, Marx C, Gómez-Baraibar Á, Nowaczyk MM, Tischler D, Hemschemeier A, Happe T. Evolutionary diverse Chlamydomonas reinhardtii Old Yellow Enzymes reveal distinctive catalytic properties and potential for whole-cell biotransformations. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101970] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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19
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Wang P, Zhao F, Hartmann V, Nowaczyk MM, Ruff A, Schuhmann W, Conzuelo F. Reassessing the rationale behind herbicide biosensors: The case of a photosystem II/redox polymer-based bioelectrode. Bioelectrochemistry 2020; 136:107597. [PMID: 32674005 DOI: 10.1016/j.bioelechem.2020.107597] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Revised: 07/04/2020] [Accepted: 07/04/2020] [Indexed: 01/12/2023]
Abstract
Interfacing photosynthetic protein complexes with electrodes is frequently used for the identification of electron transfer mechanisms and the fabrication of biosensors. Binding of herbicide compounds to the terminal plastoquinone QB at photosystem II (PSII) causes disruption of electron flow that is associated with a diminished performance of the associated biodevice. Thus, the principle of electron transport inhibition at PSII can be used for herbicide detection and has inspired the fabrication of several biosensors for this purpose. However, the biosensor performance may reveal a more complex behavior than generally expected. As we present here for a photobioelectrode constituted by PSII embedded in a redox polymer matrix, the effect caused by inhibitors does not only impact the electron transfer from PSII but also the properties of the polymer film used for immobilization and electrical wiring of the protein complexes. Incorporation of phenolic inhibitors into the polymer film surprisingly translates into enhanced photocurrents and, in particular cases, in a higher stability of the overall electrode architecture. The achieved results stress the importance to evaluate first the possible influence of analytes of interest on the biosensor architecture as a whole and provide important insights for consideration in future design of bioelectrochemical devices.
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Affiliation(s)
- Panpan Wang
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Fangyuan Zhao
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Volker Hartmann
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Adrian Ruff
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780 Bochum, Germany.
| | - Felipe Conzuelo
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780 Bochum, Germany.
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20
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Bobrowski T, Conzuelo F, Ruff A, Hartmann V, Frank A, Erichsen T, Nowaczyk MM, Schuhmann W. Scalable Fabrication of Biophotoelectrodes by Means of Automated Airbrush Spray-Coating. Chempluschem 2020; 85:1396-1400. [PMID: 32608194 DOI: 10.1002/cplu.202000291] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Revised: 06/05/2020] [Indexed: 11/07/2022]
Abstract
The fabrication and electrochemical evaluation of transparent photoelectrodes consisting of Photosystem I (PSI) or Photosystem II (PSII) is described, which are embedded and electrically wired by a redox polymer. The fabrication process is performed by an automated airbrush-type spray coating system, which ensures controlled and scalable electrode preparation. As proof of concept, electrodes with a surface area of up to 25 cm2 were prepared. The macro-porous structure of the indium tin oxide electrodes allows a high loading of the photoactive protein complexes leading to enhanced photocurrents, which are essential for potentially technologically relevant solar-powered devices. In addition, we show that unpurified crude PSII extracts, which can be provided in comparatively high yields for electrode modification, are suitable for photoelectrode fabrication with comparable photocurrent densities.
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Affiliation(s)
- Tim Bobrowski
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Felipe Conzuelo
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Adrian Ruff
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Volker Hartmann
- Plant Biochemistry; Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Anna Frank
- Plant Biochemistry; Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Thomas Erichsen
- Sensolytics GmbH, Universitätsstr. 142, 44799, Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry; Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, 44780, Bochum, Germany
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21
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Cimiotti D, Fujita-Becker S, Möhner D, Smolina N, Budde H, Wies A, Morgenstern L, Gudkova A, Sejersen T, Sjöberg G, Mügge A, Nowaczyk MM, Reusch P, Pfitzer G, Stehle R, Schröder RR, Mannherz HG, Kostareva A, Jaquet K. Infantile restrictive cardiomyopathy: cTnI-R170G/W impair the interplay of sarcomeric proteins and the integrity of thin filaments. PLoS One 2020; 15:e0229227. [PMID: 32182250 PMCID: PMC7077804 DOI: 10.1371/journal.pone.0229227] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2019] [Accepted: 01/31/2020] [Indexed: 12/11/2022] Open
Abstract
TNNI3 encoding cTnI, the inhibitory subunit of the troponin complex, is the main target for mutations leading to restrictive cardiomyopathy (RCM). Here we investigate two cTnI-R170G/W amino acid replacements, identified in infantile RCM patients, which are located in the regulatory C-terminus of cTnI. The C-terminus is thought to modulate the function of the inhibitory region of cTnI. Both cTnI-R170G/W strongly enhanced the Ca2+-sensitivity of skinned fibres, as is typical for RCM-mutations. Both mutants strongly enhanced the affinity of troponin (cTn) to tropomyosin compared to wildtype cTn, whereas binding to actin was either strengthened (R170G) or weakened (R170W). Furthermore, the stability of reconstituted thin filaments was reduced as revealed by electron microscopy. Filaments containing R170G/W appeared wavy and showed breaks. Decoration of filaments with myosin subfragment S1 was normal in the presence of R170W, but was irregular with R170G. Surprisingly, both mutants did not affect the Ca2+-dependent activation of reconstituted cardiac thin filaments. In the presence of the N-terminal fragment of cardiac myosin binding protein C (cMyBPC-C0C2) cooperativity of thin filament activation was increased only when the filaments contained wildtype cTn. No effect was observed in the presence of cTn containing R170G/W. cMyBPC-C0C2 significantly reduced binding of wildtype troponin to actin/tropomyosin, but not of both mutant cTn. Moreover, we found a direct troponin/cMyBPC-C0C2 interaction using microscale thermophoresis and identified cTnI and cTnT, but not cTnC as binding partners for cMyBPC-C0C2. Only cTn containing cTnI-R170G showed a reduced affinity towards cMyBPC-C0C2. Our results suggest that the RCM cTnI variants R170G/W impair the communication between thin and thick filament proteins and destabilize thin filaments.
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Affiliation(s)
- Diana Cimiotti
- Department of Clinical Pharmacology and Molecular Cardiology, Ruhr-University of Bochum, Bochum, Germany.,Cardiology, Bergmannsheil and St. Josef Hospital, Clinics of the Ruhr-University Bochum, Bochum, Germany
| | - Setsuko Fujita-Becker
- Cryoelectron Microscopy, BioQuant, Medical Faculty, University of Heidelberg, Heidelberg, Germany
| | - Desirée Möhner
- Vegetative Physiology, University of Cologne, Cologne, Germany
| | - Natalia Smolina
- Department of Molecular Biology and Genetics, Almazov Federal Medical Research Center, St. Petersburg, Russia
| | - Heidi Budde
- Department of Clinical Pharmacology and Molecular Cardiology, Ruhr-University of Bochum, Bochum, Germany.,Cardiology, Bergmannsheil and St. Josef Hospital, Clinics of the Ruhr-University Bochum, Bochum, Germany
| | - Aline Wies
- Vegetative Physiology, University of Cologne, Cologne, Germany
| | - Lisa Morgenstern
- Department of Clinical Pharmacology and Molecular Cardiology, Ruhr-University of Bochum, Bochum, Germany.,Cardiology, Bergmannsheil and St. Josef Hospital, Clinics of the Ruhr-University Bochum, Bochum, Germany
| | - Alexandra Gudkova
- Department of Molecular Biology and Genetics, Almazov Federal Medical Research Center, St. Petersburg, Russia
| | - Thomas Sejersen
- Department of Women's and Children's Health and Center for Molecular Medicine, Karolinska Institute, Stockholm, Sweden
| | - Gunnar Sjöberg
- Department of Women's and Children's Health and Center for Molecular Medicine, Karolinska Institute, Stockholm, Sweden
| | - Andreas Mügge
- Cardiology, Bergmannsheil and St. Josef Hospital, Clinics of the Ruhr-University Bochum, Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Bochum, Germany
| | - Peter Reusch
- Department of Clinical Pharmacology and Molecular Cardiology, Ruhr-University of Bochum, Bochum, Germany
| | | | - Robert Stehle
- Vegetative Physiology, University of Cologne, Cologne, Germany
| | - Rasmus R Schröder
- Cryoelectron Microscopy, BioQuant, Medical Faculty, University of Heidelberg, Heidelberg, Germany
| | - Hans G Mannherz
- Department of Clinical Pharmacology and Molecular Cardiology, Ruhr-University of Bochum, Bochum, Germany.,Department of Anatomy and Embryology, Medical Faculty, Ruhr-University Bochum, Bochum, Germany
| | - Anna Kostareva
- Department of Molecular Biology and Genetics, Almazov Federal Medical Research Center, St. Petersburg, Russia.,Department of Women's and Children's Health and Center for Molecular Medicine, Karolinska Institute, Stockholm, Sweden
| | - Kornelia Jaquet
- Department of Clinical Pharmacology and Molecular Cardiology, Ruhr-University of Bochum, Bochum, Germany.,Cardiology, Bergmannsheil and St. Josef Hospital, Clinics of the Ruhr-University Bochum, Bochum, Germany
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22
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Schuller JM, Saura P, Thiemann J, Schuller SK, Gamiz-Hernandez AP, Kurisu G, Nowaczyk MM, Kaila VRI. Redox-coupled proton pumping drives carbon concentration in the photosynthetic complex I. Nat Commun 2020; 11:494. [PMID: 31980611 PMCID: PMC6981117 DOI: 10.1038/s41467-020-14347-4] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2019] [Accepted: 12/22/2019] [Indexed: 11/25/2022] Open
Abstract
Photosynthetic organisms capture light energy to drive their energy metabolism, and employ the chemical reducing power to convert carbon dioxide (CO2) into organic molecules. Photorespiration, however, significantly reduces the photosynthetic yields. To survive under low CO2 concentrations, cyanobacteria evolved unique carbon-concentration mechanisms that enhance the efficiency of photosynthetic CO2 fixation, for which the molecular principles have remained unknown. We show here how modular adaptations enabled the cyanobacterial photosynthetic complex I to concentrate CO2 using a redox-driven proton-pumping machinery. Our cryo-electron microscopy structure at 3.2 Å resolution shows a catalytic carbonic anhydrase module that harbours a Zn2+ active site, with connectivity to proton-pumping subunits that are activated by electron transfer from photosystem I. Our findings illustrate molecular principles in the photosynthetic complex I machinery that enabled cyanobacteria to survive in drastically changing CO2 conditions.
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Affiliation(s)
- Jan M Schuller
- Department of Structural Cell Biology, Max Planck Institute of Biochemistry, 82152, Martinsried, Germany.
| | - Patricia Saura
- Department of Biochemistry and Biophysics, Stockholm University, SE-106 91, Stockholm, Sweden
- Center of Integrated Protein Science at the Department of Chemistry, Technical University of Munich, Garching, Germany
| | - Jacqueline Thiemann
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780, Bochum, Germany
| | - Sandra K Schuller
- Department of Structural Cell Biology, Max Planck Institute of Biochemistry, 82152, Martinsried, Germany
| | - Ana P Gamiz-Hernandez
- Department of Biochemistry and Biophysics, Stockholm University, SE-106 91, Stockholm, Sweden
- Center of Integrated Protein Science at the Department of Chemistry, Technical University of Munich, Garching, Germany
| | - Genji Kurisu
- Institute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan
- Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, 560-0043, Japan
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780, Bochum, Germany.
| | - Ville R I Kaila
- Department of Biochemistry and Biophysics, Stockholm University, SE-106 91, Stockholm, Sweden.
- Center of Integrated Protein Science at the Department of Chemistry, Technical University of Munich, Garching, Germany.
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23
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Hristou A, Gerlach I, Stolle DS, Neumann J, Bischoff A, Dünschede B, Nowaczyk MM, Zoschke R, Schünemann D. Ribosome-Associated Chloroplast SRP54 Enables Efficient Cotranslational Membrane Insertion of Key Photosynthetic Proteins. Plant Cell 2019; 31:2734-2750. [PMID: 31444312 PMCID: PMC6881123 DOI: 10.1105/tpc.19.00169] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 07/12/2019] [Accepted: 08/22/2019] [Indexed: 05/20/2023]
Abstract
Key proteins of the photosynthetic complexes are encoded in the chloroplast genome and cotranslationally inserted into the thylakoid membrane. However, the molecular details of this process are largely unknown. Here, we demonstrate by ribosome profiling that the conserved chloroplast signal recognition particle subunit (cpSRP54) is required for efficient cotranslational targeting of several central photosynthetic proteins, such as the PSII PsbA (D1) subunit, in Arabidopsis (Arabidopsis thaliana). High-resolution analysis of membrane-associated and soluble ribosome footprints revealed that the SRP-dependent membrane targeting of PsbA is already initiated at an early translation step before exposure of the nascent chain from the ribosome. In contrast to cytosolic SRP, which contacts the ribosome close to the peptide tunnel exit site, analysis of the cpSRP54/ribosome binding interface revealed a direct interaction of cpSRP54 and the ribosomal subunit uL4, which is not located at the tunnel exit site but forms a part of the internal peptide tunnel wall by a loop domain. The plastid-specific C-terminal tail region of cpSRP54 plays a crucial role in uL4 binding. Our data indicate a novel mechanism of SRP-dependent membrane protein transport with the cpSRP54/uL4 interaction as a central element in early initiation of cotranslational membrane targeting.
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Affiliation(s)
- Athina Hristou
- Molecular Biology of Plant Organelles, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Ines Gerlach
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany
| | - Dominique S Stolle
- Molecular Biology of Plant Organelles, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Jennifer Neumann
- Molecular Biology of Plant Organelles, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Annika Bischoff
- Molecular Biology of Plant Organelles, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Beatrix Dünschede
- Molecular Biology of Plant Organelles, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Reimo Zoschke
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany
| | - Danja Schünemann
- Molecular Biology of Plant Organelles, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
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24
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Aras M, Hartmann V, Hartmann J, Nowaczyk MM, Frankenberg-Dinkel N. Proximity channeling during cyanobacterial phycoerythrobilin synthesis. FEBS J 2019; 287:284-294. [PMID: 31319014 DOI: 10.1111/febs.15003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Revised: 06/17/2019] [Accepted: 07/16/2019] [Indexed: 11/30/2022]
Abstract
Substrate channeling is a widespread mechanism in metabolic pathways to avoid decomposition of unstable intermediates, competing reactions, and to accelerate catalytic turnover. During the biosynthesis of light-harvesting phycobilins in cyanobacteria, two members of the ferredoxin-dependent bilin reductases are involved in the reduction of the open-chain tetrapyrrole biliverdin IXα to the pink pigment phycoerythrobilin. The first reaction is catalyzed by 15,16-dihydrobiliverdin:ferredoxin oxidoreductase and produces the unstable intermediate 15,16-dihydrobiliverdin (DHBV). This intermediate is subsequently converted by phycoerythrobilin:ferredoxin oxidoreductase to the final product phycoerythrobilin. Although substrate channeling has been postulated already a decade ago, detailed experimental evidence was missing. Using a new on-column assay employing immobilized enzyme in combination with UV-Vis and fluorescence spectroscopy revealed that both enzymes transiently interact and that transfer of the intermediate is facilitated by a significantly higher binding affinity of DHBV toward phycoerythrobilin:ferredoxin oxidoreductase. Concluding from the presented data, the intermediate DHBV is transferred via proximity channeling.
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Affiliation(s)
- Marco Aras
- Fachbereich Biologie, Abteilung für Mikrobiologie, Technische Universität Kaiserslautern, Germany
| | - Volker Hartmann
- Cyanobakterielle Membranprotein Komplexe, Fakultät für Biologie und Biotechnologie, Ruhr-Universität Bochum, Germany
| | - Jana Hartmann
- Fachbereich Biologie, Abteilung für Mikrobiologie, Technische Universität Kaiserslautern, Germany
| | - Marc M Nowaczyk
- Cyanobakterielle Membranprotein Komplexe, Fakultät für Biologie und Biotechnologie, Ruhr-Universität Bochum, Germany
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25
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26
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Schuller JM, Birrell JA, Tanaka H, Konuma T, Wulfhorst H, Cox N, Schuller SK, Thiemann J, Lubitz W, Sétif P, Ikegami T, Engel BD, Kurisu G, Nowaczyk MM. Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer. Science 2018; 363:257-260. [PMID: 30573545 DOI: 10.1126/science.aau3613] [Citation(s) in RCA: 122] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 12/06/2018] [Indexed: 12/22/2022]
Abstract
Photosynthetic complex I enables cyclic electron flow around photosystem I, a regulatory mechanism for photosynthetic energy conversion. We report a 3.3-angstrom-resolution cryo-electron microscopy structure of photosynthetic complex I from the cyanobacterium Thermosynechococcus elongatus. The model reveals structural adaptations that facilitate binding and electron transfer from the photosynthetic electron carrier ferredoxin. By mimicking cyclic electron flow with isolated components in vitro, we demonstrate that ferredoxin directly mediates electron transfer between photosystem I and complex I, instead of using intermediates such as NADPH (the reduced form of nicotinamide adenine dinucleotide phosphate). A large rate constant for association of ferredoxin to complex I indicates efficient recognition, with the protein subunit NdhS being the key component in this process.
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Affiliation(s)
- Jan M Schuller
- Department of Structural Cell Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany.
| | - James A Birrell
- Max Planck Institute for Chemical Energy Conversion, 45470 Mülheim an der Ruhr, Germany
| | - Hideaki Tanaka
- Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.,Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka 560-0043, Japan
| | - Tsuyoshi Konuma
- Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan
| | - Hannes Wulfhorst
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany.,Daiichi Sankyo Deutschland GmbH, Zielstattstr. 48, 81379 München, Germany
| | - Nicholas Cox
- Max Planck Institute for Chemical Energy Conversion, 45470 Mülheim an der Ruhr, Germany.,Research School of Chemistry, Australian National University, Canberra, ACT 2601, Australia
| | - Sandra K Schuller
- Gene Center and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Str. 25, 81377 Munich, Germany
| | - Jacqueline Thiemann
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Wolfgang Lubitz
- Max Planck Institute for Chemical Energy Conversion, 45470 Mülheim an der Ruhr, Germany
| | - Pierre Sétif
- Institut de Biologie Intégrative de la Cellule (I2BC), IBITECS, CEA, CNRS, Université Paris-Saclay, F-91198 Gif-sur-Yvette, France
| | - Takahisa Ikegami
- Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan
| | - Benjamin D Engel
- Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany
| | - Genji Kurisu
- Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan. .,Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka 560-0043, Japan
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany.
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27
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Sokol KP, Robinson WE, Oliveira AR, Warnan J, Nowaczyk MM, Ruff A, Pereira IAC, Reisner E. Photoreduction of CO 2 with a Formate Dehydrogenase Driven by Photosystem II Using a Semi-artificial Z-Scheme Architecture. J Am Chem Soc 2018; 140:16418-16422. [PMID: 30452863 PMCID: PMC6307851 DOI: 10.1021/jacs.8b10247] [Citation(s) in RCA: 74] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
Solar-driven
coupling of water oxidation with CO2 reduction
sustains life on our planet and is of high priority in contemporary
energy research. Here, we report a photoelectrochemical
tandem device that performs photocatalytic reduction of CO2 to formate. We employ a semi-artificial design, which wires
a W-dependent formate dehydrogenase (FDH) cathode to a photoanode
containing the photosynthetic water oxidation enzyme, Photosystem
II, via a synthetic dye with complementary light absorption. From
a biological perspective, the system achieves a metabolically inaccessible
pathway of light-driven CO2 fixation to formate. From a
synthetic point of view, it represents a proof-of-principle system
utilizing precious-metal-free catalysts for selective CO2-to-formate conversion using water as an electron donor. This hybrid
platform demonstrates the translatability and versatility of coupling
abiotic and biotic components to create challenging models for solar
fuel and chemical synthesis.
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Affiliation(s)
- Katarzyna P Sokol
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , U.K
| | - William E Robinson
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , U.K
| | - Ana R Oliveira
- Instituto de Tecnologia Química e Biológica António Xavier (ITQB NOVA) , Universidade NOVA de Lisboa , Av. da República , 2780-157 Oeiras , Portugal
| | - Julien Warnan
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , U.K
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology & Biotechnology , Ruhr-Universität Bochum , Universitätsstraße 150 , 44780 Bochum , Germany
| | - Adrian Ruff
- Analytical Chemistry - Center for Electrochemical Sciences, Faculty of Chemistry and Biochemistry , Ruhr-Universität Bochum , Universitätsstraße 150 , 44780 Bochum , Germany
| | - Inês A C Pereira
- Instituto de Tecnologia Química e Biológica António Xavier (ITQB NOVA) , Universidade NOVA de Lisboa , Av. da República , 2780-157 Oeiras , Portugal
| | - Erwin Reisner
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , U.K
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28
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Zhao F, Hartmann V, Ruff A, Nowaczyk MM, Rögner M, Schuhmann W, Conzuelo F. Unravelling electron transfer processes at photosystem 2 embedded in an Os-complex modified redox polymer. Electrochim Acta 2018. [DOI: 10.1016/j.electacta.2018.09.093] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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29
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Affiliation(s)
- Marc M Nowaczyk
- Chair for Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Nicolas Plumeré
- Center for Electrochemical Sciences, Faculty for Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany
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30
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Zhao F, Hardt S, Hartmann V, Zhang H, Nowaczyk MM, Rögner M, Plumeré N, Schuhmann W, Conzuelo F. Light-induced formation of partially reduced oxygen species limits the lifetime of photosystem 1-based biocathodes. Nat Commun 2018; 9:1973. [PMID: 29773789 PMCID: PMC5958124 DOI: 10.1038/s41467-018-04433-z] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 04/26/2018] [Indexed: 12/15/2022] Open
Abstract
Interfacing photosynthetic proteins specifically photosystem 1 (PS1) with electrodes enables light-induced charge separation processes for powering semiartificial photobiodevices with, however, limited long-term stability. Here, we present the in-depth evaluation of a PS1/Os-complex-modified redox polymer-based biocathode by means of scanning photoelectrochemical microscopy. Focalized local illumination of the bioelectrode and concomitant collection of H2O2 at the closely positioned microelectrode provide evidence for the formation of partially reduced oxygen species under light conditions. Long-term evaluation of the photocathode at different O2 concentrations as well as after incorporating catalase and superoxide dismutase reveals the particularly challenging issue of avoiding the generation of reactive species. Moreover, the evaluation of films prepared with inactivated PS1 and free chlorophyll points out additional possible pathways for the generation of oxygen radicals. To avoid degradation of PS1 during illumination and hence to enhance the long-term stability, the operation of biophotocathodes under anaerobic conditions is indispensable.
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Affiliation(s)
- Fangyuan Zhao
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, Bochum, 44780, Germany
| | - Steffen Hardt
- Center for Electrochemical Sciences - Molecular Nanostructures, Ruhr-Universität Bochum, Universitätsstr. 150, Bochum, 44780, Germany
| | - Volker Hartmann
- Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Huijie Zhang
- Center for Electrochemical Sciences - Molecular Nanostructures, Ruhr-Universität Bochum, Universitätsstr. 150, Bochum, 44780, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Matthias Rögner
- Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany
| | - Nicolas Plumeré
- Center for Electrochemical Sciences - Molecular Nanostructures, Ruhr-Universität Bochum, Universitätsstr. 150, Bochum, 44780, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, Bochum, 44780, Germany.
| | - Felipe Conzuelo
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, Bochum, 44780, Germany.
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31
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Kubota-Kawai H, Mutoh R, Shinmura K, Sétif P, Nowaczyk MM, Rögner M, Ikegami T, Tanaka H, Kurisu G. X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex. Nat Plants 2018; 4:218-224. [PMID: 29610537 DOI: 10.1038/s41477-018-0130-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Accepted: 03/06/2018] [Indexed: 05/03/2023]
Abstract
Photosystem I (PSI), a large protein complex located in the thylakoid membrane, mediates the final step in light-driven electron transfer to the stromal electron carrier protein ferredoxin (Fd). Here, we report the first structural description of the PSI-Fd complex from Thermosynechococcus elongatus. The trimeric PSI complex binds three Fds in a non-equivalent manner. While each is recognized by a PSI protomer in a similar orientation, the distances between Fds and the PSI redox centres differ. Fd binding thus entails loss of the exact three-fold symmetry of the PSI's soluble subunits, inducing structural perturbations which are transferred to the lumen through PsaF. Affinity chromatography and nuclear magnetic resonance analyses of PSI-Fd complexes support the existence of two different Fd-binding states, with one Fd being more tightly bound than the others. We propose a dynamic structural basis for productive complex formation, which supports fast electron transfer between PSI and Fd.
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Affiliation(s)
- Hisako Kubota-Kawai
- Institute for Protein Research, Osaka University, Osaka, Japan
- National Institute for Basic Biology, Aichi, Japan
| | - Risa Mutoh
- Institute for Protein Research, Osaka University, Osaka, Japan
- Department of Applied Physics, Faculty of Science, Fukuoka University, Fukuoka, Japan
| | - Kanako Shinmura
- Institute for Protein Research, Osaka University, Osaka, Japan
| | - Pierre Sétif
- Institut de Biologie Intégrative de la Cellule (I2BC), IBITECS, CEA, CNRS, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Marc M Nowaczyk
- Plant Biochemistry, Faculty of Biology & Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Matthias Rögner
- Plant Biochemistry, Faculty of Biology & Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Takahisa Ikegami
- Graduate School of Medical Life Science, Yokohama City University, Yokohama, Japan
- Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama, Japan
| | - Hideaki Tanaka
- Institute for Protein Research, Osaka University, Osaka, Japan
- Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama, Japan
- Department of Macromolecular Science, Graduate School of Science, Osaka, Japan
| | - Genji Kurisu
- Institute for Protein Research, Osaka University, Osaka, Japan.
- Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama, Japan.
- Department of Macromolecular Science, Graduate School of Science, Osaka, Japan.
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32
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Zhao F, Plumeré N, Nowaczyk MM, Ruff A, Schuhmann W, Conzuelo F. Interrogation of a PS1-Based Photocathode by Means of Scanning Photoelectrochemical Microscopy. Small 2017; 13:1604093. [PMID: 28508474 DOI: 10.1002/smll.201604093] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2016] [Revised: 02/20/2017] [Indexed: 06/07/2023]
Abstract
In the development of photosystem-based energy conversion devices, the in-depth understanding of electron transfer processes involved in photocurrent generation and possible charge recombination is essential as a basis for the development of photo-bioelectrochemical architectures with increased efficiency. The evaluation of a bio-photocathode based on photosystem 1 (PS1) integrated within a redox hydrogel by means of scanning photoelectrochemical microscopy (SPECM) is reported. The redox polymer acts as a conducting matrix for the transfer of electrons from the electrode surface to the photo-oxidized P700 centers within PS1, while methyl viologen is used as charge carrier for the collection of electrons at the reduced FB site of PS1. The analysis of the modified surfaces by SPECM enables the evaluation of electron-transfer processes by simultaneously monitoring photocurrent generation at the bio-photoelectrode and the associated generation of reduced charge carriers. The possibility to visualize charge recombination processes is illustrated by using two different electrode materials, namely Au and p-doped Si, exhibiting substantially different electron transfer kinetics for the reoxidation of the methyl viologen radical cation used as freely diffusing charge carrier. In the case of p-doped Si, a slower recombination kinetics allows visualization of methyl viologen radical cation concentration profiles from SPECM approach curves.
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Affiliation(s)
- Fangyuan Zhao
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Nicolas Plumeré
- Center for Electrochemical Sciences - Molecular Nanostructures, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Adrian Ruff
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Felipe Conzuelo
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
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Eßmann V, Zhao F, Hartmann V, Nowaczyk MM, Schuhmann W, Conzuelo F. In Operando Investigation of Electrical Coupling of Photosystem 1 and Photosystem 2 by Means of Bipolar Electrochemistry. Anal Chem 2017; 89:7160-7165. [DOI: 10.1021/acs.analchem.7b01222] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Vera Eßmann
- Analytical
Chemistry - Center for Electrochemical Sciences (CES) and ‡Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Fangyuan Zhao
- Analytical
Chemistry - Center for Electrochemical Sciences (CES) and ‡Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Volker Hartmann
- Analytical
Chemistry - Center for Electrochemical Sciences (CES) and ‡Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Marc M. Nowaczyk
- Analytical
Chemistry - Center for Electrochemical Sciences (CES) and ‡Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Wolfgang Schuhmann
- Analytical
Chemistry - Center for Electrochemical Sciences (CES) and ‡Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Felipe Conzuelo
- Analytical
Chemistry - Center for Electrochemical Sciences (CES) and ‡Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
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Zhao F, Conzuelo F, Hartmann V, Li H, Stapf S, Nowaczyk MM, Rögner M, Plumeré N, Lubitz W, Schuhmann W. A novel versatile microbiosensor for local hydrogen detection by means of scanning photoelectrochemical microscopy. Biosens Bioelectron 2017; 94:433-437. [PMID: 28334627 DOI: 10.1016/j.bios.2017.03.037] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Revised: 03/15/2017] [Accepted: 03/17/2017] [Indexed: 11/25/2022]
Abstract
The development of a versatile microbiosensor for hydrogen detection is reported. Carbon-based microelectrodes were modified with a [NiFe]-hydrogenase embedded in a viologen-modified redox hydrogel for the fabrication of a sensitive hydrogen biosensor By integrating the microbiosensor in a scanning photoelectrochemical microscope, it was capable of serving simultaneously as local light source to initiate photo(bio)electrochemical reactions while acting as sensitive biosensor for the detection of hydrogen. A hydrogen evolution biocatalyst based on photosystem 1-platinum nanoparticle biocomplexes embedded into a specifically designed redox polymer was used as a model for proving the capability of the developed hydrogen biosensor for the detection of hydrogen upon localized illumination. The versatility and sensitivity of the proposed microbiosensor as probe tip allows simplification of the set-up used for the evaluation of complex electrochemical processes and the rapid investigation of local photoelectrocatalytic activity of biocatalysts towards light-induced hydrogen evolution.
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Affiliation(s)
- Fangyuan Zhao
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Felipe Conzuelo
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Volker Hartmann
- Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Huaiguang Li
- Center for Electrochemical Sciences - Molecular Nanostructures, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Stefanie Stapf
- Center for Electrochemical Sciences - Molecular Nanostructures, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Matthias Rögner
- Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Nicolas Plumeré
- Center for Electrochemical Sciences - Molecular Nanostructures, Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany
| | - Wolfgang Lubitz
- Max Planck Institut für Chemische Energiekonversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry - Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum, Universitätsstr. 150, D-44780 Bochum, Germany.
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35
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Ziehe D, Dünschede B, Zenker M, Funke S, Nowaczyk MM, Schünemann D. The Chloroplast SRP Systems of Chaetosphaeridium globosum and Physcomitrella patens as Intermediates in the Evolution of SRP-Dependent Protein Transport in Higher Plants. PLoS One 2016; 11:e0166818. [PMID: 27861610 PMCID: PMC5115805 DOI: 10.1371/journal.pone.0166818] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Accepted: 11/05/2016] [Indexed: 11/19/2022] Open
Abstract
The bacterial signal recognition particle (SRP) mediates the cotranslational targeting of membrane proteins and is a high affinity complex consisting of a SRP54 protein subunit (Ffh) and an SRP RNA. The chloroplast SRP (cpSRP) pathway has adapted throughout evolution to enable the posttranslational targeting of the light harvesting chlorophyll a/b binding proteins (LHCPs) to the thylakoid membrane. In spermatophytes (seed plants), the cpSRP lacks the SRP RNA and is instead formed by a high affinity interaction of the conserved 54-kD subunit (cpSRP54) with the chloroplast-specific cpSRP43 protein. This heterodimeric cpSRP recognizes LHCP and delivers it to the thylakoid membrane. However, in contrast to spermatophytes, plastid SRP RNAs were identified within all streptophyte lineages and in all chlorophyte branches. Furthermore, it was shown that cpSRP43 does not interact with cpSRP54 in chlorophytes (e.g., Chlamydomonas reinhardtii). In this study, we biochemically characterized the cpSRP system of the charophyte Chaetosphaeridium globosum and the bryophyte Physcomitrella patens. Interaction studies demonstrate low affinity binding of cpSRP54 to cpSRP43 (Kd ~10 μM) in Chaetosphaeridium globosum and Physcomitrella patens as well as relatively low affinity binding of cpSRP54 to cpSRP RNA (Kd ~1 μM) in Physcomitrella patens. CpSRP54/cpSRP43 complex formation in charophytes is supported by the finding that specific alterations in the second chromodomain of cpSRP43, that are conserved within charophytes and absent in land plants, do not interfere with cpSRP54 binding. Furthermore, our data show that the elongated apical loop structure of the Physcomitrella patens cpSRP RNA contributes to the low binding affinity between cpSRP54 and the cpSRP RNA.
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Affiliation(s)
- Dominik Ziehe
- Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780, Bochum, Germany
| | - Beatrix Dünschede
- Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780, Bochum, Germany
| | - Mira Zenker
- Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780, Bochum, Germany
| | - Silke Funke
- Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780, Bochum, Germany
| | - Marc M. Nowaczyk
- Cyanobacterial Membrane Protein Complexes, Ruhr-University Bochum, 44780, Bochum, Germany
| | - Danja Schünemann
- Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780, Bochum, Germany
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Calow J, Behrens AJ, Mader S, Bockau U, Struwe WB, Harvey DJ, Cormann KU, Nowaczyk MM, Loser K, Schinor D, Hartmann MWW, Crispin M. Antibody production using a ciliate generates unusual antibody glycoforms displaying enhanced cell-killing activity. MAbs 2016; 8:1498-1511. [PMID: 27594301 PMCID: PMC5098438 DOI: 10.1080/19420862.2016.1228504] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Antibody glycosylation is a key parameter in the optimization of antibody therapeutics. Here, we describe the production of the anti-cancer monoclonal antibody rituximab in the unicellular ciliate, Tetrahymena thermophila. The resulting antibody demonstrated enhanced antibody-dependent cell-mediated cytotoxicity, which we attribute to unusual N-linked glycosylation. Detailed chromatographic and mass spectrometric analysis revealed afucosylated, oligomannose-type glycans, which, as a whole, displayed isomeric structures that deviate from the typical human counterparts, but whose branches were equivalent to fragments of metabolic intermediates observed in human glycoproteins. From the analysis of deposited crystal structures, we predict that the ciliate glycans adopt protein-carbohydrate interactions with the Fc domain that closely mimic those of native complex-type glycans. In addition, terminal glucose structures were identified that match biosynthetic precursors of human glycosylation. Our results suggest that ciliate-based expression systems offer a route to large-scale production of monoclonal antibodies exhibiting glycosylation that imparts enhanced cell killing activity.
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Affiliation(s)
| | - Anna-Janina Behrens
- b Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford , Oxford , UK
| | | | | | - Weston B Struwe
- b Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford , Oxford , UK
| | - David J Harvey
- b Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford , Oxford , UK
| | - Kai U Cormann
- c Plant Biochemistry, Ruhr University Bochum , Bochum , Germany
| | - Marc M Nowaczyk
- c Plant Biochemistry, Ruhr University Bochum , Bochum , Germany
| | - Karin Loser
- d Department of Dermatology , University of Münster , Münster , Germany
| | - Daniel Schinor
- e Wessling GmbH, Pharmaanalytik Münster , Münster , Germany
| | | | - Max Crispin
- b Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford , Oxford , UK
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Heinz S, Rast A, Shao L, Gutu A, Gügel IL, Heyno E, Labs M, Rengstl B, Viola S, Nowaczyk MM, Leister D, Nickelsen J. Thylakoid Membrane Architecture in Synechocystis Depends on CurT, a Homolog of the Granal CURVATURE THYLAKOID1 Proteins. Plant Cell 2016; 28:2238-2260. [PMID: 27543090 PMCID: PMC5059811 DOI: 10.1105/tpc.16.00491] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Revised: 08/05/2016] [Accepted: 08/17/2016] [Indexed: 05/21/2023]
Abstract
Photosynthesis occurs in thylakoids, a highly specialized membrane system. In the cyanobacterium Synechocystis sp PCC 6803 (hereafter Synechocystis 6803), the thylakoids are arranged parallel to the plasma membrane and occasionally converge toward it to form biogenesis centers. The initial steps in PSII assembly are thought to take place in these regions, which contain a membrane subcompartment harboring the early assembly factor PratA and are referred to as PratA-defined membranes (PDMs). Loss of CurT, the Synechocystis 6803 homolog of Arabidopsis thaliana grana-shaping proteins of the CURVATURE THYLAKOID1 family, results in disrupted thylakoid organization and the absence of biogenesis centers. As a consequence, PSII is less efficiently assembled and accumulates to only 50% of wild-type levels. CurT induces membrane curvature in vitro and is distributed all over the thylakoids, with local concentrations at biogenesis centers. There it forms a sophisticated tubular network at the cell periphery, as revealed by live-cell imaging. CurT is part of several high molecular mass complexes, and Blue Native/SDS-PAGE and isoelectric focusing demonstrated that different isoforms associate with PDMs and thylakoids. Moreover, CurT deficiency enhances sensitivity to osmotic stress, adding a level of complexity to CurT function. We propose that CurT is crucial for the differentiation of membrane architecture, including the formation of PSII-related biogenesis centers, in Synechocystis 6803.
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Affiliation(s)
- Steffen Heinz
- Molekulare Pflanzenwissenschaften, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
| | - Anna Rast
- Molekulare Pflanzenwissenschaften, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
| | - Lin Shao
- Molekulare Pflanzenwissenschaften, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
| | - Andrian Gutu
- Department of Molecular and Cellular Biology, FAS Center for Systems Biology, Harvard University, Cambridge, Massachusetts 02138
| | - Irene L Gügel
- Biochemie und Physiologie der Pflanzen, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
- Munich Centre for Integrated Protein Science CiPSM, Ludwig-Maximilians-Universität München, Department of Chemistry and Biochemistry, 81377 Munich, Germany
| | - Eiri Heyno
- Biochemie der Pflanzen, Ruhr-Universität Bochum, 44801 Bochum, Germany
- Max-Planck-Institut für Chemische Energiekonversion, 45470 Mülheim an der Ruhr, Germany
| | - Mathias Labs
- Molekularbiologie der Pflanzen, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
| | - Birgit Rengstl
- Molekulare Pflanzenwissenschaften, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
| | - Stefania Viola
- Molekularbiologie der Pflanzen, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
| | - Marc M Nowaczyk
- Biochemie der Pflanzen, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Dario Leister
- Molekularbiologie der Pflanzen, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
| | - Jörg Nickelsen
- Molekulare Pflanzenwissenschaften, Ludwig-Maximilians-Universität München, Biozentrum, 82152 Planegg-Martinsried, Germany
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Köninger K, Gómez Baraibar Á, Mügge C, Paul CE, Hollmann F, Nowaczyk MM, Kourist R. Rekombinante Cyanobakterien für die asymmetrische Reduktion von C=C‐Bindungen mithilfe biokatalytischer Wasseroxidation. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201601200] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Katharina Köninger
- Nachwuchsgruppe Mikrobielle Biotechnologie Ruhr-Universität Bochum 44780 Bochum Deutschland
| | - Álvaro Gómez Baraibar
- Nachwuchsgruppe Mikrobielle Biotechnologie Ruhr-Universität Bochum 44780 Bochum Deutschland
| | - Carolin Mügge
- Nachwuchsgruppe Mikrobielle Biotechnologie Ruhr-Universität Bochum 44780 Bochum Deutschland
| | - Caroline E. Paul
- Department of Biotechnology Delft University of Technology Niederlande
| | - Frank Hollmann
- Department of Biotechnology Delft University of Technology Niederlande
| | - Marc M. Nowaczyk
- Lehrstuhl Biochemie der Pflanzen Ruhr-Universität Bochum Deutschland
| | - Robert Kourist
- Nachwuchsgruppe Mikrobielle Biotechnologie Ruhr-Universität Bochum 44780 Bochum Deutschland
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Köninger K, Gómez Baraibar Á, Mügge C, Paul CE, Hollmann F, Nowaczyk MM, Kourist R. Recombinant Cyanobacteria for the Asymmetric Reduction of C=C Bonds Fueled by the Biocatalytic Oxidation of Water. Angew Chem Int Ed Engl 2016; 55:5582-5. [PMID: 27029020 DOI: 10.1002/anie.201601200] [Citation(s) in RCA: 81] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Indexed: 02/04/2023]
Abstract
A recombinant enoate reductase was expressed in cyanobacteria and used for the light-catalyzed, enantioselective reduction of C=C bonds. The coupling of oxidoreductases to natural photosynthesis allows asymmetric syntheses fueled by the oxidation of water. Bypassing the addition of sacrificial cosubstrates as electron donors significantly improves the atom efficiency and avoids the formation of undesired side products. Crucial factors for product formation are the availability of NADPH and the amount of active enzyme in the cells. The efficiency of the reaction is comparable to typical whole-cell biotransformations in E. coli. Under optimized conditions, a solution of 100 mg prochiral 2-methylmaleimide was reduced to optically pure 2-methylsuccinimide (99 % ee, 80 % yield of isolated product). High product yields and excellent optical purities demonstrate the synthetic usefulness of light-catalyzed whole-cell biotransformations using recombinant cyanobacteria.
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Affiliation(s)
- Katharina Köninger
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Álvaro Gómez Baraibar
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Carolin Mügge
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Caroline E Paul
- Department of Biotechnology, Delft University of Technology, The Netherlands
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, The Netherlands
| | - Marc M Nowaczyk
- Chair of Plant Biochemistry, Ruhr-Universität Bochum, Germany
| | - Robert Kourist
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, 44780, Bochum, Germany.
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Korste A, Wulfhorst H, Ikegami T, Nowaczyk MM, Stoll R. NOE distance and dihedral angle restraints to calculate the solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus. Data Brief 2016; 6:249-52. [PMID: 26862566 PMCID: PMC4707177 DOI: 10.1016/j.dib.2015.12.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Revised: 11/23/2015] [Accepted: 12/06/2015] [Indexed: 11/27/2022] Open
Abstract
Here, we have compiled a nuclear magnetic resonance (NMR)-derived set of nuclear Overhauser enhancement (NOE) distance and dihedral angle restraints that allow for the calculation of the structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus in solution. These restraints to calculate the structure in solution of CupS have been deposited to the Protein Data Bank (www.rcsb.org) under PDB-ID accession number 2MXA. This is the first experimental data set published to compute the three-dimensional structure of CupS. This structure is presented in the research article “Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus” published by Korste et al. in Biochim. Biophys. Acta 1847(2015)1212–1219 [1]. The cyanobacterial multi-subunit membrane protein complex NDH-1 structurally and functionally relates to Complex I of eubacteria and mitochondria. The NDH-1 complex is mechanistically involved in respiration and cyclic electron transfer around photosystem I (PSI) as well as in a unique mechanism for inorganic carbon concentration.
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Affiliation(s)
- Annika Korste
- Biomolecular Spectroscopy, Faculty of Chemistry and Biochemistry, Ruhr University of Bochum, Bochum, Germany
| | - Hannes Wulfhorst
- Department of Plant Biochemistry, Faculty of Biology, Ruhr University of Bochum, Bochum, Germany
| | | | - Marc M Nowaczyk
- Department of Plant Biochemistry, Faculty of Biology, Ruhr University of Bochum, Bochum, Germany
| | - Raphael Stoll
- Biomolecular Spectroscopy, Faculty of Chemistry and Biochemistry, Ruhr University of Bochum, Bochum, Germany
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41
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Cormann KU, Möller M, Nowaczyk MM. Critical Assessment of Protein Cross-Linking and Molecular Docking: An Updated Model for the Interaction Between Photosystem II and Psb27. Front Plant Sci 2016; 7:157. [PMID: 26925076 PMCID: PMC4758025 DOI: 10.3389/fpls.2016.00157] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2015] [Accepted: 01/30/2016] [Indexed: 05/09/2023]
Abstract
Photosystem II (PSII) is a large membrane-protein complex composed of about 20 subunits and various cofactors, which mediates the light-driven oxidation of water and reduction of plastoquinone, and is part of the photosynthetic electron transfer chain that is localized in the thylakoid membrane of cyanobacteria, algae, and plants. The stepwise assembly of PSII is guided and facilitated by numerous auxiliary proteins that play specific roles in this spatiotemporal process. Psb27, a small protein localized in the thylakoid lumen, appears to associate with an intermediate PSII complex that is involved in assembly of the Mn4CaO5 cluster. Its precise binding position on the PSII intermediate remains elusive, as previous approaches to the localization of Psb27 on PSII have yielded contradictory results. This was our motivation for a critical assessment of previously used methods and the development of an improved analysis pipeline. The combination of chemical cross-linking and mass spectrometry (CX-MS) with isotope-coded cross-linkers was refined and validated with reference to the PSII crystal structure. Psb27 was localized on the PSII surface adjacent to the large lumenal domain of CP43 on the basis of a cross-link connecting Psb27-K91 to CP43-K381. Additional contacts associating Psb27 with CP47 and the C-termini of D1 and D2 were detected by surface plasmon resonance (SPR) spectroscopy. This information was used to model the binding of Psb27 to the PSII surface in a region that is occupied by PsbV in the mature complex.
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Plumeré N, Nowaczyk MM. Biophotoelectrochemistry of Photosynthetic Proteins. Biophotoelectrochemistry: From Bioelectrochemistry to Biophotovoltaics 2016; 158:111-136. [DOI: 10.1007/10_2016_7] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Mutoh R, Muraki N, Shinmura K, Kubota-Kawai H, Lee YH, Nowaczyk MM, Rögner M, Hase T, Ikegami T, Kurisu G. X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-Substituted Cyanobacterial Ferredoxin. Biochemistry 2015; 54:6052-61. [DOI: 10.1021/acs.biochem.5b00601] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Risa Mutoh
- Institute
for Protein Research, Osaka University, 3-2 Yamadaoka,
Suita, Osaka 565-0871, Japan
- Core
Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama 332-0012, Japan
| | - Norifumi Muraki
- Institute
for Protein Research, Osaka University, 3-2 Yamadaoka,
Suita, Osaka 565-0871, Japan
| | - Kanako Shinmura
- Institute
for Protein Research, Osaka University, 3-2 Yamadaoka,
Suita, Osaka 565-0871, Japan
| | - Hisako Kubota-Kawai
- Institute
for Protein Research, Osaka University, 3-2 Yamadaoka,
Suita, Osaka 565-0871, Japan
- Core
Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama 332-0012, Japan
| | - Young-Ho Lee
- Institute
for Protein Research, Osaka University, 3-2 Yamadaoka,
Suita, Osaka 565-0871, Japan
| | - Marc M. Nowaczyk
- Plant
Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Matthias Rögner
- Plant
Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Toshiharu Hase
- Institute
for Protein Research, Osaka University, 3-2 Yamadaoka,
Suita, Osaka 565-0871, Japan
| | - Takahisa Ikegami
- Department
of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan
- Core
Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama 332-0012, Japan
| | - Genji Kurisu
- Institute
for Protein Research, Osaka University, 3-2 Yamadaoka,
Suita, Osaka 565-0871, Japan
- Core
Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama 332-0012, Japan
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44
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Zhao F, Conzuelo F, Hartmann V, Li H, Nowaczyk MM, Plumeré N, Rögner M, Schuhmann W. Light Induced H2 Evolution from a Biophotocathode Based on Photosystem 1--Pt Nanoparticles Complexes Integrated in Solvated Redox Polymers Films. J Phys Chem B 2015; 119:13726-31. [PMID: 26091401 DOI: 10.1021/acs.jpcb.5b03511] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report on a biophotocathode based on photosystem 1 (PS1)-Pt nanoparticle complexes integrated in a redox hydrogel for photoelectrocatalytic H2 evolution at low overpotential. A poly(vinyl)imidazole Os(bispyridine)2Cl polymer serves as conducting matrix to shuttle the electrons from the electrode to the PS1-Pt complexes embedded within the hydrogel. Light induced charge separation at the PS1-Pt complexes results in the generation of photocurrents (4.8 ± 0.4 μA cm(-2)) when the biophotocathodes are exposed to anaerobic buffer solutions. Under these conditions, the protons are the sole possible electron acceptors, suggesting that the photocurrent generation is associated with H2 evolution. Direct evidence for the latter process is provided by monitoring the H2 production with a Pt microelectrode in scanning electrochemical microscopy configuration over the redox hydrogel film containing the PS1-Pt complexes under illumination.
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Affiliation(s)
- Fangyuan Zhao
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
| | - Felipe Conzuelo
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
| | - Volker Hartmann
- Plant Biochemistry, Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
| | - Huaiguang Li
- Center for Electrochemical Sciences-Molecular Nanostructures, Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
| | - Marc M Nowaczyk
- Plant Biochemistry, Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
| | - Nicolas Plumeré
- Center for Electrochemical Sciences-Molecular Nanostructures, Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
| | - Matthias Rögner
- Plant Biochemistry, Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Ruhr-Universität Bochum , Universitätsstrasse 150, 44780 Bochum, Germany
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45
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Walter B, Hristou A, Nowaczyk MM, Schünemann D. In vitro reconstitution of co-translational D1 insertion reveals a role of the cpSec-Alb3 translocase and Vipp1 in photosystem II biogenesis. Biochem J 2015; 468:315-24. [PMID: 25803492 DOI: 10.1042/bj20141425] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Photosystem II (PS II) is a multi-subunit complex localized in the thylakoid membrane that performs the light-dependent photosynthetic charge separation. The PS II reaction centre comprises, among others, the D1 protein. De novo synthesis and repair of PS II require efficient mechanisms for transport and insertion of plastid encoded D1 into the thylakoid membrane. To elucidate the process of D1 insertion, we used an in vitro translation system derived from pea chloroplasts to reconstitute the D1 insertion. Thereby, truncated D1 encoding psbA mRNAs lacking a stop codon were translated in the presence of thylakoid membranes and the translation was stalled by addition of chloramphenicol. The generated ribosome nascent chain complexes (RNCs) were tightly associated with the thylakoids. Subsequently, these D1 insertion intermediates were enriched from solubilized thylakoids by sucrose cushion centrifugation. Immunological analyses demonstrated the presence of the cpSec translocase, Alb3, cpFtsY, cpSRP54 and Vipp1 (vesicle-inducing protein in plastids 1) in the enriched D1 insertion intermediates. A complex formation between cpSecY, Alb3, cpFtsY and Vipp1 in thylakoid membranes was shown by gel filtration chromatography, BN (Blue Native)/SDS-PAGE and co-immunoprecipitation experiments. Furthermore, a stimulating effect of recombinant Vipp1 on the formation of a D1 insertion intermediate was observed in vitro. These results suggest a co-operative function of these proteins in D1 insertion.
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Affiliation(s)
- Björn Walter
- *Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780 Bochum, Germany
| | - Athina Hristou
- *Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780 Bochum, Germany
| | - Marc M Nowaczyk
- †Plant Biochemistry, Ruhr-University Bochum, 44780 Bochum, Germany
| | - Danja Schünemann
- *Molecular Biology of Plant Organelles, Ruhr-University Bochum, 44780 Bochum, Germany
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46
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Bartsch M, Gassmeyer SK, Köninger K, Igarashi K, Liauw P, Dyczmons-Nowaczyk N, Miyamoto K, Nowaczyk MM, Kourist R. Photosynthetic production of enantioselective biocatalysts. Microb Cell Fact 2015; 14:53. [PMID: 25889799 PMCID: PMC4412116 DOI: 10.1186/s12934-015-0233-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2015] [Accepted: 03/25/2015] [Indexed: 12/30/2022] Open
Abstract
Background Global resource depletion poses a dramatic threat to our society and creates a strong demand for alternative resources that do not compete with the production of food. Meeting this challenge requires a thorough rethinking of all steps of the value chain regarding their sustainability resource demand and the possibility to substitute current, petrol-based supply-chains with renewable resources. This regards also the production of catalysts for chemical synthesis. Phototrophic microorganisms have attracted considerable attention as a biomanufacturing platform for the sustainable production of chemicals and biofuels. They allow the direct utilization of carbon dioxide and do not compete with food production. Photosynthetic enzyme production of catalysts would be a sustainable supply of these important components of the biotechnological and chemical industries. This paper focuses on the usefulness of recombinant cyanobacteria for the photosynthetic expression of enantioselective catalysts. As a proof of concept, we used the cyanobacterium Synechocystis sp. PCC 6803 for the heterologous expression of two highly enantioselective enzymes. Results We investigated the expression yield and the usefulness of cyanobacterial cell extracts for conducting stereoselective reactions. The cyanobacterial enzyme expression achieved protein yields of 3% of total soluble protein (%TSP) while the expression in E. coli yielded 6-8% TSP. Cell-free extracts from a recombinant strain expressing the recombinant esterase ST0071 from the thermophilic organism Sulfolobus tokodai ST0071 and arylmalonate decarboxylase from Bordetella bronchiseptica showed excellent enantioselectivity (>99% ee) and yield (>91%) in the desymmetrisation of prochiral malonates. Conclusions We were able to present the proof-of-concept of photoautotrophic enzyme expression as a viable alternative to heterotrophic expression hosts. Our results show that the introduction of foreign genes is straightforward. Cell components from Synechocystis did not interfere with the stereoselective transformations, underlining the usability of photoautotrophic organisms for the production of enzymes. Given the considerable commercial value of recombinant biocatalysts, cyanobacterial enzyme expression has thus the potential to complement existing approaches to use phototrophic organisms for the production of chemicals and biofuels.
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Affiliation(s)
- Maik Bartsch
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany.
| | - Sarah K Gassmeyer
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany.
| | - Katharina Köninger
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany.
| | - Kosuke Igarashi
- Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Yokohama, 223-8522, Japan.
| | - Pasqual Liauw
- Chair for Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany.
| | - Nina Dyczmons-Nowaczyk
- Chair for Plant Biochemistry, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany.
| | - Kenji Miyamoto
- Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Yokohama, 223-8522, Japan.
| | - Marc M Nowaczyk
- Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Yokohama, 223-8522, Japan.
| | - Robert Kourist
- Junior Research Group for Microbial Biotechnology, Ruhr-Universität Bochum, Universitätsstr. 150, 44780, Bochum, Germany.
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47
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Korste A, Wulfhorst H, Ikegami T, Nowaczyk MM, Stoll R. (1)H, (13)C and (15)N chemical shift assignments of the NDH-1 complex subunit CupS. Biomol NMR Assign 2015; 9:169-171. [PMID: 25038746 DOI: 10.1007/s12104-014-9567-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2014] [Accepted: 07/04/2014] [Indexed: 06/03/2023]
Abstract
The cyanobacterial NDH-1 complex is involved in respiratory as well as in cyclic electron transfer around photosystem I. Here, we report both backbone and side chain chemical shift assignments of CupS, a small subunit of the multisubunit membrane protein complex NDH-1 from Thermosynechococcus elongatus. The construct contains 159 amino acids including a Strep-tag and two additional amino acids.
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Affiliation(s)
- Annika Korste
- Biomolecular NMR, Faculty of Chemistry and Biochemistry, Ruhr University of Bochum, Bochum, Germany
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48
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Liauw P, Kannchen D, Gasper R, Dyczmons-Nowaczyk N, Nowaczyk MM, Hofmann E. Cloning, expression, crystallization and preliminary X-ray studies of a superfolder GFP fusion of cyanobacterial Psb32. Acta Crystallogr F Struct Biol Commun 2015; 71:409-13. [PMID: 25849501 DOI: 10.1107/s2053230x15003970] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Accepted: 02/25/2015] [Indexed: 11/10/2022]
Abstract
A fusion of Psb32 from the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 (TePsb32) with superfolder GFP was created for enhanced solubility and improved detection and purification. The fusion protein readily formed large hexagonal crystals belonging to space group P6₁22. A full data set extending to 2.3 Å resolution was collected at the Swiss Light Source. The phase problem could be solved by using only the sfGFP fusion partner or by using GFP and AtTLP18.3 from Arabidopsis thaliana as search models. Based on this expression construct, a versatile library of 24 vectors combining four different superfolder GFP variants and three affinity tags was generated to facilitate expression and screening of fluorescent fusion proteins.
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Affiliation(s)
- Pasqual Liauw
- Department of Plant Biochemistry, Ruhr-University Bochum, 44780 Bochum, Germany
| | - Daniela Kannchen
- Department of Plant Biochemistry, Ruhr-University Bochum, 44780 Bochum, Germany
| | - Raphael Gasper
- Department of Biophysics, Ruhr-University Bochum, 44780 Bochum, Germany
| | | | - Marc M Nowaczyk
- Department of Plant Biochemistry, Ruhr-University Bochum, 44780 Bochum, Germany
| | - Eckhard Hofmann
- Department of Biophysics, Ruhr-University Bochum, 44780 Bochum, Germany
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49
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Cormann KU, Bartsch M, Rögner M, Nowaczyk MM. Localization of the CyanoP binding site on photosystem II by surface plasmon resonance spectroscopy. Front Plant Sci 2014; 5:595. [PMID: 25414711 PMCID: PMC4220643 DOI: 10.3389/fpls.2014.00595] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Accepted: 10/13/2014] [Indexed: 05/23/2023]
Abstract
Photosystem II (PSII), a large multi subunit membrane protein complex localized in the thylakoid membrane of cyanobacteria and chloroplasts, is the only known enzyme that catalyzes the light-driven oxidation of water. In addition to the membrane intrinsic part of PSII, efficient oxygen evolution requires soluble protein subunits at its luminal interface. In contrast to the detailed crystal structure of the active cyanobacterial complex the characterization of intermediate PSII species related to its assembly and repair is hampered by their instability or low abundance. As most structural variations of the corresponding PSII species are based on a different set of protein factors bound to the luminal interface of the complex we developed a system for interaction analysis between PSII and its soluble interaction partners based on surface plasmon resonance (SPR) spectroscopy. The assay was validated by the correct localization of the extrinsic PSII proteins PsbO, PsbV, and PsbU on the luminal PSII surface and used to determine the unknown binding position of CyanoP, the cyanobacterial homolog of higher plant PsbP. The CyanoP binding site was clearly localized in the center of PSII at a position, which is occupied by the PsbO subunit in mature PSII complexes. Consistently, we demonstrate selective binding of CyanoP to an inactive PSII assembly intermediate that lacks the extrinsic subunits PsbO, PsbV, and PsbU. These findings suggest, that CyanoP functions in the dynamic lifecycle of PSII, possibly in the association of CP47 and CP43 or in photoactivation of the oxygen-evolving complex.
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Affiliation(s)
| | | | | | - Marc M. Nowaczyk
- *Correspondence: Marc M. Nowaczyk, Plant Biochemistry, Ruhr University Bochum, Universitätsstraße 150, 44801 Bochum, Germany e-mail:
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50
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Wulfhorst H, Franken LE, Wessinghage T, Boekema EJ, Nowaczyk MM. The 5 kDa protein NdhP is essential for stable NDH-1L assembly in Thermosynechococcus elongatus. PLoS One 2014; 9:e103584. [PMID: 25119998 PMCID: PMC4131877 DOI: 10.1371/journal.pone.0103584] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Accepted: 07/02/2014] [Indexed: 12/24/2022] Open
Abstract
The cyanobacterial NADPH:plastoquinone oxidoreductase complex (NDH-1), that is related to Complex I of eubacteria and mitochondria, plays a pivotal role in respiration as well as in cyclic electron transfer (CET) around PSI and is involved in a unique carbon concentration mechanism (CCM). Despite many achievements in the past, the complex protein composition and the specific function of many subunits of the different NDH-1 species remain elusive. We have recently discovered in a NDH-1 preparation from Thermosynechococcus elongatus two novel single transmembrane peptides (NdhP, NdhQ) with molecular weights below 5 kDa. Here we show that NdhP is a unique component of the ∼450 kDa NDH-1L complex, that is involved in respiration and CET at high CO2 concentration, and not detectable in the NDH-1MS and NDH-1MS' complexes that play a role in carbon concentration. C-terminal fusion of NdhP with his-tagged superfolder GFP and the subsequent analysis of the purified complex by electron microscopy and single particle averaging revealed its localization in the NDH-1L specific distal unit of the NDH-1 complex, that is formed by the subunits NdhD1 and NdhF1. Moreover, NdhP is essential for NDH-1L formation, as this type of NDH-1 was not detectable in a ΔndhP::Km mutant.
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Affiliation(s)
- Hannes Wulfhorst
- Department of Plant Biochemistry, Ruhr-University Bochum, Bochum, Germany
| | - Linda E. Franken
- Electron Microscopy Department, University of Groningen, Groningen, The Netherlands
| | - Thomas Wessinghage
- Department of Plant Biochemistry, Ruhr-University Bochum, Bochum, Germany
| | - Egbert J. Boekema
- Electron Microscopy Department, University of Groningen, Groningen, The Netherlands
| | - Marc M. Nowaczyk
- Department of Plant Biochemistry, Ruhr-University Bochum, Bochum, Germany
- * E-mail:
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