Design of Chiral β-Double Helices from γ-Peptide Foldamers

Chirality is ubiquitous in nature, and homochirality is manifested in many biomolecules. Although β-double helices are rare in peptides and proteins, they consist of alternating L- and D-amino acids. No peptide double helices with homochiral amino acids have been observed. Here, we report chiral β-double helices constructed from γ-peptides consisting of alternating achiral (E)-α,β-unsaturated 4,4-dimethyl γ-amino acids and chiral (E)-α,β-unsaturated γ-amino acids in both single crystals and in solution. The two independent strands of the same peptide intertwine to form a β-double helix structure, and it is stabilized by inter-strand hydrogen bonds. The peptides with chiral (E)-α,β-unsaturated γ-amino acids derived from α-L-amino acids adopt a (P)-β-double helix, whereas peptides consisting of (E)-α,β-unsaturated γ-amino acids derived from α-D-amino acids adopt an (M)-β-double helix conformation. The circular dichroism (CD) signature of the (P) and (M)-β-double helices and the stability of these peptides at higher temperatures were examined. Furthermore, ion transport studies suggested that these peptides transport ions across membranes. Even though the structural analogy suggests that these new β-double helices are structurally different from those of the α-peptide β-double helices, they retain ion transport activity. The results reported here may open new avenues in the design of functional foldamers.

Anion Tuned Structural Modulation and Nonlinear Optical Effects of Metal-Ion Directed 310 -Helix Networks

Metals play an important role in the structure and functions of various proteins. The combination of metal ions and peptides have been emerging as an attractive field to create advanced structures and biomaterials. Here, we are reporting the anion-influenced, silver ion coordinated diverse networks of designed short tripeptide 310 -helices with terminal pyridyl groups. The short peptides adopted classical right-handed, left-handed and 310 EL -helical conformations in the presence of different silver salts. The peptides have displayed conformational flexibility to accommodate different sizes and interactions of anions to yield a variety of metal-coordinated networks. The complexes of metal ions and peptides have shown different porous networks, right- and left-handed helical polymers, transformation of helix into superhelix and 2 : 2 metal-peptide macrocycles. Further, the metal-peptide crystals with inherent dipoles of helical peptides gave striking second harmonic generation response. The optical energy upconversion from NIR to red and green light is demonstrated. Overall, we have shown the utilization of short 310 -helices for the construction of diverse metal-coordinated helical networks and notable non-linear optical effects.

Proteolytically Stable ααγ-Hybrid Peptides Inhibit the Aggregation and Cytotoxicity of Aβ42

The recent approval of antibody-based therapy for targeting the clearance of amyloid plaques fuels the research in designing small molecules and peptide inhibitors to target the aggregation of Aβ-peptides. Here, we report that the 15-residue ααγ-hybrid peptide not only inhibits the aggregation of soluble Aβ42 into fibrils but also disintegrates the aggregated Aβ42 fibrils into smaller assemblies. Further, the hybrid peptide completely rescues neuronal cells from the toxicity of Aβ42 at equimolar concentrations. The shorter 10- and 12-mer peptides showed weak aggregation inhibition activity, while the fully hydrophobic 15-mer ααγ-hybrid peptide analogue showed no aggregation inhibition activity. Further, the 15-mer ααγ-hybrid peptide showed resistance against trypsin digestion and also nontoxic to the neuronal cells. The CD revealed that the peptide upon interaction induces a helix-type conformation in the Aβ42. This is in sharp contrast to the β-sheet conformation of Aβ42 upon incubation. The two-dimensional-NMR (2D-NMR) analysis revealed a large perturbation in the chemical shifts of residues at the N-terminus. The presence of 15-mer peptide at an equimolar concentration of Aβ42 showed less tendency for aggregation and also exhibited nontoxicity to the neuronal cells. The results reported here may be useful in designing new therapeutics for Alzheimer's disease.

Foldamer Nanotubes Mediated Label-Free Detection of Protein-Small Molecule Interactions

Development of miniaturized lab-on-chip devices for the detection of rapid and specific small molecule-protein binding interactions at very low concentrations holds significant importance in drug discovery and biomedical applications. Here, we are reporting the label-free detection of small molecule-protein interactions on the surface functionalizable nanotubes of α,γ-hybrid peptide helical foldamers using nanoscale capacitance and impedance spectroscopy. The 12-helix conformation of the α,γ-hybrid peptide observed in the single crystals, self-assembled into nanotubes in an aqueous environment with exposed cysteine thiols for small molecule conjugation. The binding of streptavidin to the covalently linked biotin on the surface of nanotubes was detected at the picomolar concentrations. No change in the capacitance and impedance were observed in the absence of either immobilized biotin or protein streptavidin. The functionalizable hybrid peptide nanotubes reported here pave the way for the label-free detection of various small molecule protein interactions at very low concentrations.

Preparation of chitosan functionalized polyamidoamine for the separation of trivalent lanthanides from acidic waste solution

The manuscript deals with the sorption of Am(III) and Eu(III) from pH medium using chitosan functionalized with dendrimer like polyamidoamine (PAMAM) polymers up to third generation. The PAMAM polymers were introduced into chitosan by two step processes and were characterized by various instrumental techniques like FTIR, XRD, TG-DTA. The sorption process was highly pH dependent for both Am(III) and Eu(III) with increasing trend for higher pH of the solution. Kinetics of equilibration was found to be fast with equilibrium attained in 10 min for both the metal ions. Pseudo 2nd order kinetics mechanism was found to be followed for both Am(III) and Eu(III). The sorption process of Eu(III) was found to fit the Langmuir isotherm model with maximum sorption capacity of 6.01 mg/g. There was no effect on the generation of PAMAM Dendron on the efficiency, kinetics or sorption capacity for Am(III) as well as Eu(III). The synthesized different generation of PAMAM functionalized chitosan is a promising material for removal of actinides and lanthanides from waste water solution.

Transport behavior of actinides and lanthanides across a supported liquid membrane using an unexplored monoamide, N,N′-bis(2-ethyl hexyl) α-hydroxy acetamide (BEHGA)

An unexplored novel monoamide N,N′-bis(2-ethyl hexyl) α-hydroxy acetamide (BEHGA) was used as a carrier for transport of Am(III), Eu(III), Pu(IV/VI) and U(VI) from HNO3 medium across a supported liquid membrane (SLM). Various parameters were investigated to obtain the optimum transport conditions. Transport rates followed the trend Pu(IV)>Am(III)≥Eu(III)>U(VI)> Pu(VI). The effects of macro concentrations of U(VI) and Nd(III) on the transport rate of Am(III) were studied. The diffusion coefficient value for the Am(III)-BEHGA system in HNO3 medium was found to be ~1.8×10−6 cm2/s. The standard deviation of the results obtained from transport experiments by this extractant was found to be ±5%. The membrane was found to be highly selective for actinides and lanthanides with respect to different fission products.

Encapsulated polymeric beads impregnating unexplored amide, N,N′-bis(2-ethyl hexyl) α-hydroxy acetamide (BEHGA) – preparation, sorption and kinetic studies for tri-, tetra- and hexavalent radionuclides

Removal of actinides (trivalent, tetravalent and hexavalent) from nitric acid medium was studied using solid-liquid extraction technique employing polymeric encapsulated beads (PEBs) using an indigenously synthesized, unexplored novel monoamide, N,N′-bis(2-ethyl hexyl) α-hydroxy acetamide (BEHGA). The PEBs were synthesized by phase inversion technique. The structure and morphology of the synthesized PEBs were evaluated by employing various characterization techniques like FT-IR, TGA and SEM. The well characterized PEBs were studied for its Am(III), Pu(IV) and U(VI) sorption behavior from nitric acid medium. Kinetics studies showed that the sorption is fast with equilibrium being reached within 60 min of equilibration. The sorption mechanism follows pseudo-second-order mechanism with intraparticle diffusion playing an important role. Langmuir isotherm model was found to best describe the sorption isotherm. The maximum Am(III) sorption capacity of the PEBs was found to be 8.45 mg/g (experimental) and 8.43 mg/g (Langmuir). Back extraction was possible using 0.5 M HNO3. Stability of the PEBs was found to be quite good with no significant structural deformation or leaching out of the extractant in 4.0 M HNO3 solution for at least up to 8 days.

Carbon nano tubes functionalized with novel functional group- amido-amine for sorption of actinides

The manuscript presents the results on the sorption of U(VI), Am(III) & Eu(III) from pH medium by a novel amido-amine functionalized multiwalled carbon nanotube (MWCNT). The novel functional group was introduced in the MWCNT by two step processes and characterized by various instrumental techniques like Scanning Electron Microscopy (SEM), Raman and X-ray Photoelectron Spectroscopy (XPS). The sorption process was found to be highly dependent on the pH of the solution with maximum sorption for both 233U, 241Am & 152+154Eu at pH 7.0. Kinetics of sorption was found to be fast with equilibrium reached in ∼15min and the sorption was found to be following pseudo 2nd order kinetics for the radionuclides. The sorption for both 233U and 152+154Eu followed Langmuir sorption model with maximum sorption capacity of 20.66mg/g and 16.1mg/g respectively. This has been explained by DFT calculations which shows that more negative solvation energy of U(VI) compared to Am(III) and Eu(III) and stronger U-MWCNT-AA complex is responsible for higher sorption capacity of U(VI) compared to Am(III) and Eu(III).The synthesized amido-amine functionalized MWCNT is a very promising candidate for removal of actinides and lanthanides from waste water solution with high efficiency.

Complexation thermodynamics of diglycolamide with f-elements: solvent extraction and density functional theory analysis

Optimized complexes of Lu³⁺ with TMDGA in 1 : 1, 1 : 2 and 1 : 3 stoichiometric ratios and plots of theoretically calculated stepwise binding energy.

Development of adsorbent from Teflon waste by radiation induced grafting: equilibrium and kinetic adsorption of dyes

Mutual radiation grafting technique was employed to graft polyacrylic acid (PAA) onto Polytetrafluoroethylene (Teflon) scrap using high energy gamma radiation. Polyacrylic acid-g-Teflon (PAA-g-Teflon) adsorbent was characterized by grafting extent measurement, FTIR spectroscopy, SEM and wet ability & surface energy analysis. The PAA-g-Teflon adsorbent was studied for dye adsorption from aqueous solution of basic dyes, namely, Basic red 29 (BR29) and Basic yellow 11 (BY11). The equilibrium adsorption data were analyzed by Langmuir and Freundlich adsorption isotherm models, whereas, adsorption kinetics was analyzed using pseudo-first order, pseudo-second order and intra-particle diffusion kinetic models. Equilibrium adsorption of BR29 was better explained by Langmuir adsorption model, while that of BY11 by Freundlich adsorption model. The adsorption capacity for BY11 was more than for BR29. Separation factor (R(L)) was found to be in the range 0 < R(L) < 1, indicating favorable adsorption of dyes. Higher coefficient of determination (r(2) > 0.99) and better agreement between the q(e,cal) and q(e,exp) values suggested that pseudo-second order kinetic model better represents the kinetic adsorption data. The non-linearity obtained for intra-particle diffusion plot indicated, more than one process is involved in the adsorption of basic dyes. The desorption studies showed that ~95% of the adsorbed dye could be eluted in suitable eluent.