The variation of antigenic and histo-blood group binding sites synergistically drive the evolution among chronologically emerging GII.4 noroviruses

Norovirus, commonly found on shellfish and vegetables, is a foodborne virus with GII.4 as the dominant genotype responsible for widespread outbreaks since 1995. Continuous variation of major capsid protein VP1 can lead to changes in the immunogenicity and host receptor binding ability of norovirus, which is an important evolutionary mechanism. Therefore, analyzing the immunogenicity of VP1 and its binding ability to various HBGAs in GII.4 variants could improve our understanding of the persistent prevalence of GII.4. Here, the results suggest that GII.4 has gradually enhanced its HBGAs binding ability over time for various types of receptors. Variants exhibit significantly stronger immune response to homologous mouse antiserum than heterologous ones, highlighting the importance of variation of antigenic and histo-blood group binding sites in driving the evolution of GII.4. These synergistic forces constantly lead to antigenic drift and changes in receptor binding, resulting in continuous emergence of new variant strains and sustained prevalence.

A self-adapting woven net trap based on the evolution mechanism of orb-web topology

The development of structures that can adapt spontaneously to achieve desired functions in complex environments is crucial for new unmanned countermeasures, such as prey capture or net-recovery. Conventional structural optimization methods based on a singular net-like configuration may lead to functional limitations and fail to achieve specific objectives. In this study, we utilized an evolutionary algorithm that incorporated mechanical features and biological corrections to construct spider threads with advanced properties capable of efficient and reliable trapping behavior in arbitrary boundary conditions. We employed distinct thread types in different components, which achieved distinguished stiffness and strength that could not be accomplished by a single kind of thread. By assembling prestress reinforcement threads, we developed an orb-web-like trap that demonstrated effective trapping performance in experiments. The adaptive evolutionary method could be applied to design intelligent intercepting devices suited to particular functions and extreme environments, with wide application prospects in net-recovery system of UAV. STATEMENT OF SIGNIFICANCE: Structures that adapt spontaneously to perform desired functions in difficult environments are crucial for rising unmanned countermeasures. Conventional structural optimization methods based on a singular net-like configuration may lead to functional limitations and fail to achieve specific objectives. We used an evolutionary algorithm that combined mechanical features and biological corrections to create spider threads in arbitrary boundary circumstances in this work. The adaptive evolutionary method could be applied to design intelligent intercepting devices suited to particular functions and extreme environments, with wide application prospects in net-recovery system of UAV.

Speciation and transformation of nitrogen for sewage sludge hydrothermal carbonization-influence of temperature and carbonization time

Hydrothermal carbonization (HTC) is an effective means of energizing high-water-content biomass that can be used to convert sewage sludge (SS) into hydrochar and reduce nitrogen content. To further reduce the emission of NO_x during the combustion of hydrochar and seek proper disposal method of liquid product, the mechanism of nitrogen conversion was studied in the range of 180-320 °C and 30-90 min. At 180-220 °C, 42.15-52.91% of the nitrogen in SS was transferred to liquid by hydrolysis of proteins and inorganic salts. At 240-280 °C, the nitrogen in hydrochar was mainly in the form of heterocyclic -N (quaternary-N, pyrrole-N, and pyridine-N). The concentration of NH₄⁺-N increased from 6.82 mg/L (180 °C) to 26.58 mg/L (280 °C) due to the enhancement of the deamination reaction. At 300-320 °C, pyrrole-N (from 15.92% to 9.38%) and pyridine-N (from 5.52% to 3.73%) in the hydrochar were converted to the more stable quaternary-N (from 0.31% to 4.28%). Meanwhile, the NH₄⁺-N and amino-N in the liquid decomposed into NH₃. Prolonging the carbonization time promoted the hydrolysis of proteins, the conversion of heterocyclic -N, and the production of NH₃. Under optimal reaction conditions (280 °C and 60 min), the nitrogen in the SS is converted to stable forms and the energy balance meets the requirements of circular-economy. The results show that temperature determines the nitrogen form and the carbonization time affects the nitrogen distribution. So HTC has the potential to reduce NO_x emissions from SS energy utilization processes.

Effect of temperature on the sulfur fate during hydrothermal carbonization of sewage sludge

To understand the effect of reaction temperature on sulfur during hydrothermal carbonization (HTC) of sewage sludge (SS), seven group of temperature (180-300 °C) were chosen to investigate the distributions and evolution of sulfur-containing compounds in hydrochar and the liquid products. Elemental analysis, X-ray photoelectron spectroscopy (XPS), and X-Ray powder diffraction (XRD) were used to characterize the distribution of sulfur in hydrochar. The concentrations of sulfate ions and sulfide were determined in the liquid sample. The experimental results showed that as the temperature increased, the O/C ratio decreased because of the improved carbonization degree of SS. After hydrothermal carbonization, 90% of the sulfur in SS remained in hydrochar. As the temperature increased, the amount of sulfur in the liquid, mainly in the form of sulfate ions, tended to decrease. However, the experimental results for the gas phase were the opposite of the liquid phase.

Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Background

The cytochrome P450 monooxygenase (P450) superfamily is involved in the biosynthesis of various primary and secondary metabolites. However, little is known about the effects of whole genome duplication (WGD) and tandem duplication (TD) events on the evolutionary history and functional divergence of P450s in Brassica after splitting from a common ancestor with Arabidopsis thaliana.

Results

Using Hidden Markov Model search and manual curation, we detected that Brassica species have nearly 1.4-fold as many P450 members as A. thaliana. Most P450s in A. thaliana and Brassica species were located on pseudo-chromosomes. The inferred phylogeny indicated that all P450s were clustered into two different subgroups. Analysis of WGD event revealed that different P450 gene families had appeared after evolutionary events of species. For the TD event analyses, the P450s from TD events in Brassica species can be divided into ancient and recent parts. Our comparison of influence of WGD and TD events on the P450 gene superfamily between A. thaliana and Brassica species indicated that the family-specific evolution in the Brassica lineage can be attributed to both WGD and TD, whereas WGD was recognized as the major mechanism for the recent evolution of the P450 super gene family. Expression analysis of P450s from A. thaliana and Brassica species indicated that WGD-type P450s showed the same expression pattern but completely different expression with TD-type P450s across different tissues in Brassica species. Selection force analysis suggested that P450 orthologous gene pairs between A. thaliana and Brassica species underwent negative selection, but no significant differences were found between P450 orthologous gene pairs in A. thaliana–B. rapa and A. thaliana–B. oleracea lineages, as well as in different subgenomes in B. rapa or B. oleracea compared with A. thaliana.

Conclusions

This study is the first to investigate the effects of WGD and TD on the evolutionary history and functional divergence of P450 gene families in A. thaliana and Brassica species. This study provides a biology model to study the mechanism of gene family formation, particularly in the context of the evolutionary history of angiosperms, and offers novel insights for the study of angiosperm genomes.

Electronic supplementary material

The online version of this article (10.1186/s12864-017-4094-7) contains supplementary material, which is available to authorized users.

Catalytic pyrolysis of cellulose in ionic liquid [bmim]OTf

This study discussed the catalytic cracking process of cellulose in ionic liquid 1-butyl-3-methylimidazolium trifluoromethanesulfonate ([bmim]OTF) under 180°C, 240°C and 340°C, found that [bmim]OTF is an effective catalyst which can effectively reduce the pyrolysis temperature(nearly 200°C) of the cellulose. FRIR, XRD and SEM were used to analyze the structure characterization of fiber before and after the cracking; GC-MS was used for liquid phase products analysis; GC was used to analyze gas phase products. The results showed that the cellulose pyrolysis in [bmim]OTf mainly generated CO2, CO and H2, also generated 2-furfuryl alcohol, 2,5-dimethyl-1,5-diallyl-3-alcohol, 1,4-butyrolactone, 5-methyl furfural, 4-hydroxy butyric acid, vinyl propionate, 1-acetoxyl group-2-butanone, furan formate tetrahydrofuran methyl ester liquid product, and thus simulated the evolution mechanism of cellulose pyrolysis products based on the basic model of cellulose monomer.